Clone Sequence Records
BS15273.complete Sequence
806 bp assembled on 2010-02-09
GenBank Submission: KX805089
> BS15273.complete
GAAGTTATCAGTCGACATGGAAATTTGGCGCTCGCTCACAGTGGGCACCA
TCGTGCTATTGGCCATCGTCTGCTTCTACGGCACCGTGGAGTCCTGCAAC
GAGGTCGTCTGCGCCTCGATCGTCTCCAAGTGCATGCTCACCCAGAGCTG
CAAGTGCGAGCTGAAGAACTGCTCCTGCTGCAAGGAGTGCCTCAAATGCC
TGGGCAAGAACTACGAGGAGTGCTGCAGCTGTGTGGAACTCTGTCCGAAG
CCCAACGACACCCGCAACTCGCTGTCCAAGAAGTCCCACGTGGAGGATTT
CGATGGAGTGCCGGAGCTCTTCAACGCCGTGGCCACTCCGGATGAGGGCG
ACAGCTTCGGATACAACTGGAACGTGTTCACGTTTCAAGTGGATTTCGAC
AAGTACTTGAAGGGACCCAAGCTGGAGAAGGACGGTCATTACTTCTTGAG
AACCAATGATAAGAACCTGGACGAAGCGATTCAGGAGCGTGACAACATTG
TGACCGTAAACTGCACGGTTATATATCTGGATCAGTGCGTGTCGTGGAAC
AAGTGCCGCACCAGCTGCCAGACGACAGGCGCCAGCAGTACGAGATGGTT
CCACGACGGCTGCTGCGAATGTGTGGGATCCACGTGCATCAACTACGGCG
TAAACGAGAGCCGCTGTAGAAAGTGCCCGGAGTCAAAGGGCGAACTGGGC
GACGAGCTGGACGATCCCATGGAGGAGGAGATGCAGGACTTCGGGGAGAG
CATGGGTCCGTTCGATGGACCCGTGAACAACAACTACTGAAAGCTTTCTA
GACCAT
BS15273.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:33:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cv-RC | 774 | CG12410-PC | 1..774 | 17..790 | 3870 | 100 | Plus |
cv-RB | 774 | CG12410-PB | 1..774 | 17..790 | 3870 | 100 | Plus |
cv-RA | 774 | CG12410-PA | 1..774 | 17..790 | 3870 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:33:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cv-RC | 1742 | CG12410-RC | 767..1541 | 16..790 | 3875 | 100 | Plus |
cv-RB | 1308 | CG12410-RB | 333..1107 | 16..790 | 3875 | 100 | Plus |
cv-RA | 1893 | CG12410-RA | 607..1381 | 16..790 | 3875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:33:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5690768..5690988 | 16..236 | 1105 | 100 | Plus |
X | 23542271 | X | 5691891..5692105 | 236..450 | 1075 | 100 | Plus |
X | 23542271 | X | 5692375..5692572 | 593..790 | 990 | 100 | Plus |
X | 23542271 | X | 5692165..5692309 | 450..594 | 725 | 100 | Plus |
X | 23542271 | X | 11988727..11988837 | 205..95 | 210 | 79.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:33:30 has no hits.
BS15273.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:12:13 Download gff for
BS15273.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cv-RA | 614..1386 | 17..789 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:01:48 Download gff for
BS15273.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cv-RA | 608..1380 | 17..789 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:11:16 Download gff for
BS15273.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cv-RA | 614..1386 | 17..789 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:31:35 Download gff for
BS15273.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cv-RA | 608..1380 | 17..789 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:31:35 Download gff for
BS15273.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5692377..5692571 | 595..789 | 100 | | Plus |
X | 5691892..5692104 | 237..449 | 100 | -> | Plus |
X | 5690769..5690988 | 17..236 | 100 | -> | Plus |
X | 5692165..5692309 | 450..594 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:01:48 Download gff for
BS15273.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5584802..5585021 | 17..236 | 100 | -> | Plus |
arm_X | 5585925..5586137 | 237..449 | 100 | -> | Plus |
arm_X | 5586198..5586342 | 450..594 | 100 | -> | Plus |
arm_X | 5586410..5586604 | 595..789 | 100 | | Plus |
BS15273.3prime Sequence
735 bp (680 high quality bases) assembled on 2006-10-24
> BS15273.3prime
ATGGTCTAGAAAGCTTTCCCTATGTGTGGTTCACGGGTCCATCGAACGGA
CCCATGCTCTCCCCGAAGTCCTGCATCTCCTCCTCCATGGGATCCTCCGG
CTCGTCGCCCAGTTCGCCCTTTGACTCCGGGCACTTTCTACAGCGGCTCT
CGTTTACGCCGTAGTTGATGCACGTGGATCCCACACATTCGCAGCAGCCG
TCGTGGAACCATCTCGTACTGCTGGCGCCTGTCGTCTGGCAGCTGGTGCG
GCACTTGTTCCACGACACGCACTGATCCAGATATATAACCGTGCAGTTTA
CGGTCACAATGTTGTCACGCTCCTGAATCGCTTCGTCCAGGTTCTTATCA
TTGGTTCTCAAGAAGTAATGACCGTCCTTCTCCAGCTTGGGTCCCTTCAA
GTACTTGTCGAAATCCACTTGAAACGTGAACACGTTCCAGTTGTATCCGA
AGCTGTCGCCCTCATCCGGAGTGGCCACGGCGTTGAAGAGCTCCGGCACT
CCATCGAAATCCTCCACGTGGGACTTCTTGGACAGCGAGTTGCGGGTGTC
GTTGGGCTTCGGACAGAGTTCCACACAGCTGCAGCACTCCTCGTAGTTCT
TGCCCAGGCATTTGAGGCACTCCTTGCAGCAGGAGCAGTTCTTCAGCTCG
CACTTGCAGCTCTGGGTGAGCATGCACTTGGAGACGATCGAGGCGCAAAC
GACCTCCTTGCAGGACTCCACGGTGCCGAAAAAAC
BS15273.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:17:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12410-PA | 774 | cv-RA | 63..762 | 728..29 | 3400 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:23:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cv-RC | 1742 | CG12410-RC | 830..1533 | 728..25 | 3445 | 99.3 | Minus |
cv-RB | 1308 | CG12410-RB | 396..1099 | 728..25 | 3445 | 99.3 | Minus |
cv-RA | 1893 | CG12410-RA | 670..1373 | 728..25 | 3445 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:23:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5691891..5692105 | 571..357 | 1075 | 100 | Minus |
X | 23542271 | X | 5692375..5692564 | 214..25 | 905 | 98.4 | Minus |
X | 23542271 | X | 5690831..5690988 | 728..571 | 760 | 98.7 | Minus |
X | 23542271 | X | 5692165..5692309 | 357..213 | 725 | 100 | Minus |
X | 23542271 | X | 11988727..11988837 | 602..712 | 180 | 77.5 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:23:21 has no hits.
BS15273.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 11:22:05 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:57:10 Download gff for
BS15273.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12410-PA | 56..774 | 17..735 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:21:33 Download gff for
BS15273.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cv-RA | 663..1381 | 17..735 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:06:32 Download gff for
BS15273.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cv-RA | 663..1381 | 17..735 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:06:32 Download gff for
BS15273.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5690824..5690988 | 571..735 | 96 | -> | Minus |
X | 5691892..5692104 | 358..570 | 100 | -> | Minus |
X | 5692165..5692309 | 213..357 | 100 | -> | Minus |
X | 5692377..5692572 | 17..212 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:21:33 Download gff for
BS15273.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5584857..5585021 | 571..735 | 96 | -> | Minus |
arm_X | 5585925..5586137 | 358..570 | 100 | -> | Minus |
arm_X | 5586198..5586342 | 213..357 | 100 | -> | Minus |
arm_X | 5586410..5586605 | 17..212 | 96 | | Minus |
BS15273.5prime Sequence
808 bp (722 high quality bases) assembled on 2006-10-24
> BS15273.5prime
GAAGTTATCAGTCGACATGGAAATTTGGCGCTCGCTCACAGTGGGCACCA
TCGTGCTATTGGCCATCGTCTGCTTCTACGGCACCGTGGAGTCCTGCAAC
GAGGTCGTCTGCGCCTCGATCGTCTCCAAGTGCATGCTCACCCAGAGCTG
CAAGTGCGAGCTGAAGAACTGCTCCTGCTGCAAGGAGTGCCTCAAATGCC
TGGGCAAGAACTACGAGGAGTGCTGCAGCTGTGTGGAACTCTGTCCGAAG
CCCAACGACACCCGCAACTCGCTGTCCAAGAAGTCCCACGTGGAGGATTT
CGATGGAGTGCCGGAGCTCTTCAACGCCGTGGCCACTCCGGATGAGGGCG
ACAGCTTCGGATACAACTGGAACGTGTTCACGTTTCAAGTGGATTTCGAC
AAGTACTTGAAGGGACCCAAGCTGGAGAAGGACGGTCATTACTTCTTGAG
AACCAATGATAAGAACCTGGACGAAGCGATTCAGGAGCGTGACAACATTG
TGACCGTAAACTGCACGGTTATATATCTGGATCAGTGCGTGTCGTGGAAC
AAGTGCCGCACCAGCTGCCAGACGACAGGCGCCAGCAGTACGAGATGGTT
CCACGACGGCTGCTGCGAATGTGTGGGATCCACGTGCATCAACTACGGCG
TAAACGAGAGCCGCTGTAGAAAGTGCCCGGAGTCAAAGGGCGAACTGGGC
GACGAGCTGGACGATCCCATGGAGGAGGAGATGCAGGACTTCGGGGAGAG
CATGGGTCCGTTCGATGGACCCGTGAACAACAACTACTGAAAGCTTTCTA
GACCATTC
BS15273.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:17:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12410-PA | 774 | cv-RA | 1..774 | 17..790 | 3870 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:36:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cv-RC | 1742 | CG12410-RC | 767..1541 | 16..790 | 3875 | 100 | Plus |
cv-RB | 1308 | CG12410-RB | 333..1107 | 16..790 | 3875 | 100 | Plus |
cv-RA | 1893 | CG12410-RA | 607..1381 | 16..790 | 3875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:36:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5690768..5690988 | 16..236 | 1105 | 100 | Plus |
X | 23542271 | X | 5691891..5692105 | 236..450 | 1075 | 100 | Plus |
X | 23542271 | X | 5692375..5692572 | 593..790 | 990 | 100 | Plus |
X | 23542271 | X | 5692165..5692309 | 450..594 | 725 | 100 | Plus |
X | 23542271 | X | 11988727..11988837 | 205..95 | 210 | 79.3 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:36:09 has no hits.
BS15273.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 11:22:06 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:57:11 Download gff for
BS15273.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12410-PA | 1..774 | 17..790 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:54:27 Download gff for
BS15273.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cv-RA | 603..1383 | 13..794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:15:14 Download gff for
BS15273.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cv-RA | 603..1383 | 13..794 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:15:14 Download gff for
BS15273.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5691892..5692104 | 237..449 | 100 | -> | Plus |
X | 5692165..5692309 | 450..594 | 100 | -> | Plus |
X | 5692377..5692574 | 595..794 | 99 | | Plus |
X | 5690764..5690988 | 13..236 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:54:27 Download gff for
BS15273.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5584797..5585021 | 13..236 | 99 | -> | Plus |
arm_X | 5585925..5586137 | 237..449 | 100 | -> | Plus |
arm_X | 5586198..5586342 | 450..594 | 100 | -> | Plus |
arm_X | 5586410..5586607 | 595..794 | 99 | | Plus |
BS15273.pep Sequence
Translation from 16 to 789
> BS15273.pep
MEIWRSLTVGTIVLLAIVCFYGTVESCNEVVCASIVSKCMLTQSCKCELK
NCSCCKECLKCLGKNYEECCSCVELCPKPNDTRNSLSKKSHVEDFDGVPE
LFNAVATPDEGDSFGYNWNVFTFQVDFDKYLKGPKLEKDGHYFLRTNDKN
LDEAIQERDNIVTVNCTVIYLDQCVSWNKCRTSCQTTGASSTRWFHDGCC
ECVGSTCINYGVNESRCRKCPESKGELGDELDDPMEEEMQDFGESMGPFD
GPVNNNY*
BS15273.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:08:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cv-PC | 257 | CG12410-PC | 1..257 | 1..257 | 1446 | 100 | Plus |
cv-PB | 257 | CG12410-PB | 1..257 | 1..257 | 1446 | 100 | Plus |
cv-PA | 257 | CG12410-PA | 1..257 | 1..257 | 1446 | 100 | Plus |
tsg-PA | 249 | CG1502-PA | 24..230 | 25..242 | 540 | 43.2 | Plus |
srw-PB | 136 | CG11582-PB | 24..128 | 86..222 | 342 | 48.2 | Plus |