Clone BS15273 Report

Search the DGRC for BS15273

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:152
Well:73
Vector:pDNR-Dual
Associated Gene/Transcriptcv-RA
Protein status:BS15273.pep: full length peptide match
Sequenced Size:806

Clone Sequence Records

BS15273.complete Sequence

806 bp assembled on 2010-02-09

GenBank Submission: KX805089

> BS15273.complete
GAAGTTATCAGTCGACATGGAAATTTGGCGCTCGCTCACAGTGGGCACCA
TCGTGCTATTGGCCATCGTCTGCTTCTACGGCACCGTGGAGTCCTGCAAC
GAGGTCGTCTGCGCCTCGATCGTCTCCAAGTGCATGCTCACCCAGAGCTG
CAAGTGCGAGCTGAAGAACTGCTCCTGCTGCAAGGAGTGCCTCAAATGCC
TGGGCAAGAACTACGAGGAGTGCTGCAGCTGTGTGGAACTCTGTCCGAAG
CCCAACGACACCCGCAACTCGCTGTCCAAGAAGTCCCACGTGGAGGATTT
CGATGGAGTGCCGGAGCTCTTCAACGCCGTGGCCACTCCGGATGAGGGCG
ACAGCTTCGGATACAACTGGAACGTGTTCACGTTTCAAGTGGATTTCGAC
AAGTACTTGAAGGGACCCAAGCTGGAGAAGGACGGTCATTACTTCTTGAG
AACCAATGATAAGAACCTGGACGAAGCGATTCAGGAGCGTGACAACATTG
TGACCGTAAACTGCACGGTTATATATCTGGATCAGTGCGTGTCGTGGAAC
AAGTGCCGCACCAGCTGCCAGACGACAGGCGCCAGCAGTACGAGATGGTT
CCACGACGGCTGCTGCGAATGTGTGGGATCCACGTGCATCAACTACGGCG
TAAACGAGAGCCGCTGTAGAAAGTGCCCGGAGTCAAAGGGCGAACTGGGC
GACGAGCTGGACGATCCCATGGAGGAGGAGATGCAGGACTTCGGGGAGAG
CATGGGTCCGTTCGATGGACCCGTGAACAACAACTACTGAAAGCTTTCTA
GACCAT

BS15273.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:33:31
Subject Length Description Subject Range Query Range Score Percent Strand
cv-RC 774 CG12410-PC 1..774 17..790 3870 100 Plus
cv-RB 774 CG12410-PB 1..774 17..790 3870 100 Plus
cv-RA 774 CG12410-PA 1..774 17..790 3870 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:33:32
Subject Length Description Subject Range Query Range Score Percent Strand
cv-RC 1742 CG12410-RC 767..1541 16..790 3875 100 Plus
cv-RB 1308 CG12410-RB 333..1107 16..790 3875 100 Plus
cv-RA 1893 CG12410-RA 607..1381 16..790 3875 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:33:29
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5690768..5690988 16..236 1105 100 Plus
X 23542271 X 5691891..5692105 236..450 1075 100 Plus
X 23542271 X 5692375..5692572 593..790 990 100 Plus
X 23542271 X 5692165..5692309 450..594 725 100 Plus
X 23542271 X 11988727..11988837 205..95 210 79.3 Minus
Blast to na_te.dros performed on 2014-11-28 04:33:30 has no hits.

BS15273.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:12:13 Download gff for BS15273.complete
Subject Subject Range Query Range Percent Splice Strand
cv-RA 614..1386 17..789 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:01:48 Download gff for BS15273.complete
Subject Subject Range Query Range Percent Splice Strand
cv-RA 608..1380 17..789 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:11:16 Download gff for BS15273.complete
Subject Subject Range Query Range Percent Splice Strand
cv-RA 614..1386 17..789 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:31:35 Download gff for BS15273.complete
Subject Subject Range Query Range Percent Splice Strand
cv-RA 608..1380 17..789 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:31:35 Download gff for BS15273.complete
Subject Subject Range Query Range Percent Splice Strand
X 5692377..5692571 595..789 100   Plus
X 5691892..5692104 237..449 100 -> Plus
X 5690769..5690988 17..236 100 -> Plus
X 5692165..5692309 450..594 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:01:48 Download gff for BS15273.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5584802..5585021 17..236 100 -> Plus
arm_X 5585925..5586137 237..449 100 -> Plus
arm_X 5586198..5586342 450..594 100 -> Plus
arm_X 5586410..5586604 595..789 100   Plus

BS15273.3prime Sequence

735 bp (680 high quality bases) assembled on 2006-10-24

> BS15273.3prime
ATGGTCTAGAAAGCTTTCCCTATGTGTGGTTCACGGGTCCATCGAACGGA
CCCATGCTCTCCCCGAAGTCCTGCATCTCCTCCTCCATGGGATCCTCCGG
CTCGTCGCCCAGTTCGCCCTTTGACTCCGGGCACTTTCTACAGCGGCTCT
CGTTTACGCCGTAGTTGATGCACGTGGATCCCACACATTCGCAGCAGCCG
TCGTGGAACCATCTCGTACTGCTGGCGCCTGTCGTCTGGCAGCTGGTGCG
GCACTTGTTCCACGACACGCACTGATCCAGATATATAACCGTGCAGTTTA
CGGTCACAATGTTGTCACGCTCCTGAATCGCTTCGTCCAGGTTCTTATCA
TTGGTTCTCAAGAAGTAATGACCGTCCTTCTCCAGCTTGGGTCCCTTCAA
GTACTTGTCGAAATCCACTTGAAACGTGAACACGTTCCAGTTGTATCCGA
AGCTGTCGCCCTCATCCGGAGTGGCCACGGCGTTGAAGAGCTCCGGCACT
CCATCGAAATCCTCCACGTGGGACTTCTTGGACAGCGAGTTGCGGGTGTC
GTTGGGCTTCGGACAGAGTTCCACACAGCTGCAGCACTCCTCGTAGTTCT
TGCCCAGGCATTTGAGGCACTCCTTGCAGCAGGAGCAGTTCTTCAGCTCG
CACTTGCAGCTCTGGGTGAGCATGCACTTGGAGACGATCGAGGCGCAAAC
GACCTCCTTGCAGGACTCCACGGTGCCGAAAAAAC

BS15273.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:17:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG12410-PA 774 cv-RA 63..762 728..29 3400 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:23:26
Subject Length Description Subject Range Query Range Score Percent Strand
cv-RC 1742 CG12410-RC 830..1533 728..25 3445 99.3 Minus
cv-RB 1308 CG12410-RB 396..1099 728..25 3445 99.3 Minus
cv-RA 1893 CG12410-RA 670..1373 728..25 3445 99.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:23:18
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5691891..5692105 571..357 1075 100 Minus
X 23542271 X 5692375..5692564 214..25 905 98.4 Minus
X 23542271 X 5690831..5690988 728..571 760 98.7 Minus
X 23542271 X 5692165..5692309 357..213 725 100 Minus
X 23542271 X 11988727..11988837 602..712 180 77.5 Plus
Blast to na_te.dros performed on 2015-02-10 22:23:21 has no hits.

BS15273.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 11:22:05 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:57:10 Download gff for BS15273.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12410-PA 56..774 17..735 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:21:33 Download gff for BS15273.3prime
Subject Subject Range Query Range Percent Splice Strand
cv-RA 663..1381 17..735 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:06:32 Download gff for BS15273.3prime
Subject Subject Range Query Range Percent Splice Strand
cv-RA 663..1381 17..735 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:06:32 Download gff for BS15273.3prime
Subject Subject Range Query Range Percent Splice Strand
X 5690824..5690988 571..735 96 -> Minus
X 5691892..5692104 358..570 100 -> Minus
X 5692165..5692309 213..357 100 -> Minus
X 5692377..5692572 17..212 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:21:33 Download gff for BS15273.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5584857..5585021 571..735 96 -> Minus
arm_X 5585925..5586137 358..570 100 -> Minus
arm_X 5586198..5586342 213..357 100 -> Minus
arm_X 5586410..5586605 17..212 96   Minus

BS15273.5prime Sequence

808 bp (722 high quality bases) assembled on 2006-10-24

> BS15273.5prime
GAAGTTATCAGTCGACATGGAAATTTGGCGCTCGCTCACAGTGGGCACCA
TCGTGCTATTGGCCATCGTCTGCTTCTACGGCACCGTGGAGTCCTGCAAC
GAGGTCGTCTGCGCCTCGATCGTCTCCAAGTGCATGCTCACCCAGAGCTG
CAAGTGCGAGCTGAAGAACTGCTCCTGCTGCAAGGAGTGCCTCAAATGCC
TGGGCAAGAACTACGAGGAGTGCTGCAGCTGTGTGGAACTCTGTCCGAAG
CCCAACGACACCCGCAACTCGCTGTCCAAGAAGTCCCACGTGGAGGATTT
CGATGGAGTGCCGGAGCTCTTCAACGCCGTGGCCACTCCGGATGAGGGCG
ACAGCTTCGGATACAACTGGAACGTGTTCACGTTTCAAGTGGATTTCGAC
AAGTACTTGAAGGGACCCAAGCTGGAGAAGGACGGTCATTACTTCTTGAG
AACCAATGATAAGAACCTGGACGAAGCGATTCAGGAGCGTGACAACATTG
TGACCGTAAACTGCACGGTTATATATCTGGATCAGTGCGTGTCGTGGAAC
AAGTGCCGCACCAGCTGCCAGACGACAGGCGCCAGCAGTACGAGATGGTT
CCACGACGGCTGCTGCGAATGTGTGGGATCCACGTGCATCAACTACGGCG
TAAACGAGAGCCGCTGTAGAAAGTGCCCGGAGTCAAAGGGCGAACTGGGC
GACGAGCTGGACGATCCCATGGAGGAGGAGATGCAGGACTTCGGGGAGAG
CATGGGTCCGTTCGATGGACCCGTGAACAACAACTACTGAAAGCTTTCTA
GACCATTC

BS15273.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:17:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG12410-PA 774 cv-RA 1..774 17..790 3870 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:36:13
Subject Length Description Subject Range Query Range Score Percent Strand
cv-RC 1742 CG12410-RC 767..1541 16..790 3875 100 Plus
cv-RB 1308 CG12410-RB 333..1107 16..790 3875 100 Plus
cv-RA 1893 CG12410-RA 607..1381 16..790 3875 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:36:06
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5690768..5690988 16..236 1105 100 Plus
X 23542271 X 5691891..5692105 236..450 1075 100 Plus
X 23542271 X 5692375..5692572 593..790 990 100 Plus
X 23542271 X 5692165..5692309 450..594 725 100 Plus
X 23542271 X 11988727..11988837 205..95 210 79.3 Minus
Blast to na_te.dros performed on 2015-02-11 17:36:09 has no hits.

BS15273.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 11:22:06 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:57:11 Download gff for BS15273.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12410-PA 1..774 17..790 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:54:27 Download gff for BS15273.5prime
Subject Subject Range Query Range Percent Splice Strand
cv-RA 603..1383 13..794 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:15:14 Download gff for BS15273.5prime
Subject Subject Range Query Range Percent Splice Strand
cv-RA 603..1383 13..794 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:15:14 Download gff for BS15273.5prime
Subject Subject Range Query Range Percent Splice Strand
X 5691892..5692104 237..449 100 -> Plus
X 5692165..5692309 450..594 100 -> Plus
X 5692377..5692574 595..794 99   Plus
X 5690764..5690988 13..236 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:54:27 Download gff for BS15273.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5584797..5585021 13..236 99 -> Plus
arm_X 5585925..5586137 237..449 100 -> Plus
arm_X 5586198..5586342 450..594 100 -> Plus
arm_X 5586410..5586607 595..794 99   Plus

BS15273.pep Sequence

Translation from 16 to 789

> BS15273.pep
MEIWRSLTVGTIVLLAIVCFYGTVESCNEVVCASIVSKCMLTQSCKCELK
NCSCCKECLKCLGKNYEECCSCVELCPKPNDTRNSLSKKSHVEDFDGVPE
LFNAVATPDEGDSFGYNWNVFTFQVDFDKYLKGPKLEKDGHYFLRTNDKN
LDEAIQERDNIVTVNCTVIYLDQCVSWNKCRTSCQTTGASSTRWFHDGCC
ECVGSTCINYGVNESRCRKCPESKGELGDELDDPMEEEMQDFGESMGPFD
GPVNNNY*

BS15273.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:08:29
Subject Length Description Subject Range Query Range Score Percent Strand
cv-PC 257 CG12410-PC 1..257 1..257 1446 100 Plus
cv-PB 257 CG12410-PB 1..257 1..257 1446 100 Plus
cv-PA 257 CG12410-PA 1..257 1..257 1446 100 Plus
tsg-PA 249 CG1502-PA 24..230 25..242 540 43.2 Plus
srw-PB 136 CG11582-PB 24..128 86..222 342 48.2 Plus