Clone Sequence Records
BS15274.3prime Sequence
363 bp (363 high quality bases) assembled on 2006-10-24
> BS15274.3prime
ATGGTCTAGAAAGCTTCTCCCTCGACTTCAGATCTAAGTCTCTCTCCCTT
TGGGTGCCCTCATAAAGGGCTTGTCGTCTCATCGCCTCACGCAACTGCTG
CTGCTCGAATCTCCTGACGGACCATTGATACCTGCAGGTCATCCAGTAGG
CGATGGTGCCGCAAAAGAAGGAGCCGAAGCCCACGTGGGTGGACAGGTGG
GTTCGCGAGGTGCCCAGAAAAGTCAGCAAGCCGATGCCGATCCCTCCGCT
GATTCCGTAGAGAAAACTGTTACGAAAGCACGGGATCTGCGCCACATCGC
GTCCGAAGATAACGAAGCTCTTGGCGGGTTCCTCGGGTTCTTCGGCCATG
TCGACTGATAACT
BS15274.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:17:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7620-PA | 333 | l(3)87Df-RA | 1..327 | 349..23 | 1560 | 99 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:40:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)87Df-RA | 551 | CG7620-RA | 69..396 | 350..23 | 1595 | 99.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:40:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13031080..13031272 | 321..129 | 935 | 99 | Minus |
3R | 32079331 | 3R | 13031331..13031443 | 135..23 | 550 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:40:13 has no hits.
BS15274.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:22:07 Download gff for
BS15274.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7620-PA | 1..333 | 17..349 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:57:13 Download gff for
BS15274.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7620-PA | 1..333 | 17..349 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:38:36 Download gff for
BS15274.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)87Df-RA | 69..396 | 23..350 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:13:16 Download gff for
BS15274.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)87Df-RA | 69..396 | 23..350 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:13:16 Download gff for
BS15274.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13031082..13031269 | 132..319 | 98 | -> | Minus |
3R | 13031335..13031443 | 23..131 | 99 | | Minus |
3R | 13030981..13031011 | 320..350 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:38:36 Download gff for
BS15274.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8856703..8856733 | 320..350 | 100 | -> | Minus |
arm_3R | 8856804..8856991 | 132..319 | 98 | -> | Minus |
arm_3R | 8857057..8857165 | 23..131 | 99 | | Minus |
BS15274.complete Sequence
365 bp assembled on 2006-11-01
GenBank Submission: FJ637909
> BS15274.complete
GAAGTTATCAGTCGACATGGCCGAAGAACCCGAGGAACCCGCCAAGAGCT
TCGTTATCTTCGGACGCGATGTGGCGCAGATCCCGTGCTTTCGTAACAGT
TTTCTCTACGGAATCAGCGGAGGGATCGGCATCGGCTTGCTGACTTTTCT
GGGCACCTCGCGAACCCACCTGTCCACCCACGTGGGCTTCGGCTCCTTCT
TCTGCGGCACCATCGCCTACTGGATGACCTGCAGGTATCAATGGTCCGTC
AGGAGATTCGAGCAGCAGCAATTGCGTGAGGCGATGAGACGACAAGCCCT
TTATGAGGGCACCCAAAGGGAGAGAGACTTAGATCTGAAGTCGGCGTAGA
AGCTTTCTAGACCAT
BS15274.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:47:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)87Df-RA | 333 | CG7620-PA | 1..333 | 17..349 | 1650 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:47:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)87Df-RA | 551 | CG7620-RA | 69..402 | 16..349 | 1655 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:47:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13031080..13031272 | 45..237 | 950 | 99.5 | Plus |
3R | 32079331 | 3R | 13031331..13031449 | 231..349 | 595 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:47:18 has no hits.
BS15274.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:20:50 Download gff for
BS15274.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)87Df-RA | 1..333 | 17..349 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:52:33 Download gff for
BS15274.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)87Df-RA | 40..373 | 16..349 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:03 Download gff for
BS15274.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)87Df-RA | 70..402 | 17..349 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:20:50 Download gff for
BS15274.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)87Df-RA | 40..373 | 16..349 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:26:57 Download gff for
BS15274.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)87Df-RA | 70..402 | 17..349 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:26:57 Download gff for
BS15274.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13030982..13031011 | 17..46 | 100 | -> | Plus |
3R | 13031082..13031269 | 47..234 | 99 | -> | Plus |
3R | 13031335..13031449 | 235..349 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:03 Download gff for
BS15274.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8856704..8856733 | 17..46 | 100 | -> | Plus |
arm_3R | 8856804..8856991 | 47..234 | 99 | -> | Plus |
arm_3R | 8857057..8857171 | 235..349 | 100 | | Plus |
BS15274.5prime Sequence
363 bp (363 high quality bases) assembled on 2006-10-24
> BS15274.5prime
GAAGTTATCAGTCGACATGGCCGAAGAACCCGAGGAACCCGCCAAGAGCT
TCGTTATCTTCGGACGCGATGTGGCGCAGATCCCGTGCTTTCGTAACAGT
TTTCTCTACGGAATCAGCGGAGGGATCGGCATCGGCTTGCTGACTTTTCT
GGGCACCTCGCGAACCCACCTGTCCACCCACGTGGGCTTCGGCTCCTTCT
TCTGCGGCACCATCGCCTACTGGATGACCTGCAGGTATCAATGGTCCGTC
AGGAGATTCGAGCAGCAGCAATTGCGTGAGGCGATGAGACGACAAGCCCT
TTATGAGGGCACCCAAAGGGAGAGAGACTTAGATCTGAAGTCGGCGTAGA
AGCTTTCTAGACC
BS15274.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:17:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7620-PA | 333 | l(3)87Df-RA | 1..333 | 17..349 | 1640 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:12:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)87Df-RA | 551 | CG7620-RA | 69..402 | 16..349 | 1655 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:12:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13031080..13031272 | 45..237 | 950 | 99.5 | Plus |
3R | 32079331 | 3R | 13031331..13031449 | 231..349 | 595 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:12:47 has no hits.
BS15274.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:22:08 Download gff for
BS15274.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7620-PA | 1..333 | 17..349 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:57:14 Download gff for
BS15274.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7620-PA | 1..333 | 17..349 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:35:26 Download gff for
BS15274.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)87Df-RA | 69..402 | 16..349 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:42:29 Download gff for
BS15274.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)87Df-RA | 69..402 | 16..349 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:42:29 Download gff for
BS15274.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13030981..13031011 | 16..46 | 100 | -> | Plus |
3R | 13031082..13031269 | 47..234 | 99 | -> | Plus |
3R | 13031335..13031449 | 235..349 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:35:26 Download gff for
BS15274.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8856703..8856733 | 16..46 | 100 | -> | Plus |
arm_3R | 8856804..8856991 | 47..234 | 99 | -> | Plus |
arm_3R | 8857057..8857171 | 235..349 | 100 | | Plus |
BS15274.pep Sequence
Translation from 16 to 348
> BS15274.pep
MAEEPEEPAKSFVIFGRDVAQIPCFRNSFLYGISGGIGIGLLTFLGTSRT
HLSTHVGFGSFFCGTIAYWMTCRYQWSVRRFEQQQLREAMRRQALYEGTQ
RERDLDLKSA*
BS15274.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:38:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)87Df-PA | 110 | CG7620-PA | 1..110 | 1..110 | 584 | 100 | Plus |