Clone Sequence Records
BS15276.complete Sequence
3155 bp assembled on 2009-12-07
GenBank Submission: KX801063
> BS15276.complete
GAAGTTATCAGTCGACATGACCAGCATGGCACGTTTTCGGAAGGTGAATC
GCCAAAGTGAGAAGCTCGAACCGGAGGCGAGTGCATCGTTGCTAAAATCA
TCCCCGAATATATTGGAGAACTTTGCCTACGACGAGTTTCAGCCAATACA
AACCAATCACCCGCTTCTAAAGCGGATGGCCACCACACCCGTCGCCCAAT
CCGGCTCCCAGAGCAGCTCCTCTTCCACATCGTCTACGCGTAAAGCGGAG
CCTAAGTTCTGCGACACCCTGGAGCGACATGCCTTCATGCGGAATGTCAT
TAATCAGCAGCCGGAGAGCACACGCCGCTACTCGACTCCTGGCGAAAAGG
AGGCCCAGGTGCGGCGCAGCCTGGAGGAGATCACCAAGGATCTGAAGGAA
ATCGAGCAGTTCGTTAGTGCCACCGAGGAGCTCATGCAGAGGGAGAAGGA
ACAGGAGCAGATGATGTACTCCAACAAGGAGAATAAGTGCCCCAGTCCGG
TGAAGAGGGTTACATATAAAATAAACGCCTACAAGGCGCCGCCTCGAAGA
CATCGTCCTGGAAGTCCACGATTCTACCACTCCAGATTGTACTTTAGGAA
TGGAAAAATTGGATGTGTCGACTCCACGGAGCATCAGAACAATGTGGGCG
CCACTCATGCTCTGGTCAAGCACATACTGCACCATGAGAAGCCCCTAGTG
AGTCCGGATAGTGTGAGGAGAGTGCTCGAGCAGGACAGCTTCGAAATGGT
TCCACTACCAGGAGCTGTTCCTGAAATCGTACCCGATCCAATTGCCATTC
AGCGGGCGGAGGAACTGGCCGCAGCCACTGGCCAGGTCGTTTTGCCCAAA
GAGGAGGAGGAGGAGGAGAAGAGTTCGCCACTGCATCAAGTGGAATCCCA
ACCAGACGTTGACGAGGACGAACAGGATGTGCAGATCTGTTACAACGAAT
CGCCCGAGCTCCAAAATGAGGATCGAAATGAGCGAACCCAGAGGACACCC
TCAATAAACGAGAGCGAGATAGTGGCCGTCGATGAACCGGACACGGAAAT
GAACTCGGATGTGGATCACCGCAAGCCAAGCAGCGCTGGTAGCTTGGACT
CCCAGGGTCAGCAGTTCCTCCGCGATCAGGTTCGTCATTTGGTTCGTCGC
TTTACAGCCAGAGCCAACAAGGTGAAGTCCCGGATCGAGCTGCCTCCGAC
TCCTTCGTCCAGCAGCACGGTCAGTTCACCATCTCCGCCTCCGACCAAGA
GTCTGCACCCTTCGCCGCAGCACAAGGTGCGTCTGGTGCCGGCTGGTCAA
TCACCCCATCGTGGAAGACTCTTCGAAGCGGATACTCCAAGGTCCAATGT
GTGGCTCTGTTCCAGTTTGTGCGGCGCCAACAATGATGAGCGAACCCTGG
ATCCCCAGGGCAAGATCTACATCTCCTGGCTATGCGTTGTATCGCTATCG
TTTCTCTATAACGCCTGGGTAATCCCGCTGCGTGCCTCGTTTCCCTTTCA
AACCAAGGAGAACACCAATATCTGGCTGGCCTGCGACTTTTGCGCTGACA
TCATATATCTACTGGATGTGGTCTTCTTTAAACATCGGGTTATGTACCTT
TTTGAGGGATTCTGGGTGAAAAACAAGAACCTCACCAGAAAGAACTACAT
GCGAAAACTGCAGTTTAAGCTGGATCTGCTGGCCCTTCTTCCGCTGGAGC
TATTGTACTTTAAACTCGGAACACAGGCGGTTTGGTTGCGTTTTCCAAGG
TTCTTTAAGATTCAGAGCTTCTGGGAAGTGTTTCGCCTTTTGGATCGAGT
CATATCTTCTCCGCACTTTGTTCGAGTGGCCAAAACCCTAACCTACATGC
TCTACATGATCCACATCACGGCTGCTCTGTACTACGCCTATAGTGACTAC
CAGGGTCTGGGACAGAATCGTTGGGTCTTCAGCGGCAAAGGGCATCCCTA
TGTAAGGTGCTTTGCTTTTGCCACCAAGACGGCAACTTCGATAGGAAAAA
ACCCCAAGCCGGAACGTCAGGGAGAGTACGTCTTCATGACGGTGGCCTGG
CTAATGGGCGTCTTTGTGTTCGCTCTGCTTATCGGTCAGATCAGGGATAT
CATCTCGACAGCCACTCGGAATAAGCATGAGTATCGCCAGCTGGAGGATG
AGACACTGGAGTACATGCGACGCCTCAATCTCTCGCAGGAGGTGCAGTCG
AGGGTCAAAATGTGGTTCCAGTTTACATGGGAGCAGCAGCGCACTTTGGA
TGAATCCAACATATTGGATGCTTTGCCCATCAATTTGAAAACCGATATCG
CCATCTCCGTGCACATCCAAACGCTCTCCAAGGTGCAACTCTTTGCTGAT
TGCGAGGAGGCTTTACTCAGAGATCTGGTTCTAAAACTAAGGGCAGTCAC
ATTTTTGCCAGGAGATTTCGTTTGCCGCAAAGGCGAAGTGGGCAGAGAGA
TGTATATCGTGAAACTGGGACAGGTTCAAGTGATGGGTGGTCCTAGTAGC
GATGTAGTGCTGGCCACTCTAACCGAAGGTTCCGTGTTCGGGGAGATCAG
TCTGCTGGGAATAAATGGAGCCGATCGCAGAACAGCAGATGTCCGATCCA
AGGGCTACTCCAACCTGTTCGTGCTGTCCAAATCGGATTTAAACGAGGTC
ATTGCCTACTATCCCACGGCCCAGGCGATTCTCAAAAAGCGTGCTCGTCA
GCTAATGCGAAAAAATGCAGCCAGAGAGCGGGAAGAGGAGCGAGAGCGAG
CACGCAGCGCCCTCCAGGCAGATGTGGTTATCGGCAATCCCAAAACACCA
GAGACGGCGCCCAAACTTCTGCAGACAGTTATCCAGGCGCTGCCGTTTGA
ATCGCCCGCCGTGGTGCTCATCACGAGAGGTTCGAAGAGGATGCGCCGCA
AGCGCCAGTCCGTGCAGATGGAGACCATTGTTGAGCCCAAGATGGAGGTG
ACAGGCGCTGCCGAGACGCAAGATCAAAAGGGCTTAAAGACAGGACGATG
TTCGCCAGATTTGCTATCTTCCATACAGCAAGAGCTGAAGTCTAAGCACA
AGTTTATCAACCTCACGGACTCGGAGAAGGCGCTGATCAGCCAATCGGCA
AACAATTCCCTGGAGGACATGAAGGTGGTGGATCTCTAAAAGCTTTCTAG
ACCAT
BS15276.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:49:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CngB-RA | 3123 | CG17922-PA | 1..3123 | 17..3139 | 15615 | 100 | Plus |
| CngB-RB | 2964 | CG17922-PB | 1..2964 | 176..3139 | 14820 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:49:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CngB-RA | 3356 | CG17922-RA | 155..3277 | 17..3139 | 15615 | 100 | Plus |
| CngB-RB | 3218 | CG17922-RB | 42..3139 | 42..3139 | 15490 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:49:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21694416..21696043 | 1669..42 | 8140 | 100 | Minus |
| 2R | 25286936 | 2R | 21692770..21693660 | 3139..2249 | 4455 | 100 | Minus |
| 2R | 25286936 | 2R | 21693718..21694147 | 2249..1820 | 2150 | 100 | Minus |
| 2R | 25286936 | 2R | 21694208..21694366 | 1821..1663 | 780 | 99.4 | Minus |
Blast to na_te.dros performed 2014-11-28 01:49:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HeT-A | 6083 | HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). | 2399..2434 | 1127..1092 | 117 | 80.6 | Minus |
BS15276.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:41:44 Download gff for
BS15276.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17922-RA | 155..3275 | 17..3137 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:58:41 Download gff for
BS15276.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17922-RA | 155..3275 | 17..3137 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:14:20 Download gff for
BS15276.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17922-RA | 155..3275 | 17..3137 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:57:35 Download gff for
BS15276.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CngB-RA | 155..3275 | 17..3137 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:57:35 Download gff for
BS15276.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21692772..21693659 | 2250..3137 | 100 | <- | Minus |
| 2R | 21693718..21694147 | 1820..2249 | 100 | <- | Minus |
| 2R | 21694210..21694359 | 1670..1819 | 100 | <- | Minus |
| 2R | 21694416..21696041 | 44..1669 | 100 | <- | Minus |
| 2R | 21696599..21696625 | 17..43 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:58:41 Download gff for
BS15276.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17580277..17581164 | 2250..3137 | 100 | <- | Minus |
| arm_2R | 17581223..17581652 | 1820..2249 | 100 | <- | Minus |
| arm_2R | 17581715..17581864 | 1670..1819 | 100 | <- | Minus |
| arm_2R | 17581921..17583546 | 44..1669 | 100 | <- | Minus |
| arm_2R | 17584104..17584130 | 17..43 | 100 | | Minus |
BS15276.3prime Sequence
792 bp (767 high quality bases) assembled on 2006-10-24
> BS15276.3prime
ATGGTCTAGAAAGCTTTTCCATGTATCCGCCACCTTCATGTCCTCCAGGG
AATTGTTTGCCGATTGGCTGATCAGCGCCTTCTCCGAGTCCGTGAGGTTG
ATAAACTTGTGCTTAGACTTCAGCTCTTGCTGTATGGAAGATAGCAAATC
TGGCGAACATCGTCCTGTCTTTAAGCCCTTTTGATCTTGCGTCTCGGCAG
CGCCTGTCACCTCCATCTTGGGCTCAACAATGGTCTCCATCTGCACGGAC
TGGCGCTTGCGGCGCATCCTCTTCGAACCTCTCGTGATGAGCACCACGGC
GGGCGATTCAAACGGCAGCGCCTGGATAACTGTCTGCAGAAGTTTGGGCG
CCGTCTCTGGTGTTTTGGGATTGCCGATAACCACATCTGCCTGGAGGGCG
CTGCGTGCTCGCTCTCGCTCCTCTTCCCGCTCTCTGGCTGCATTTTTTCG
CATTAGCTGACGAGCACGCTTTTTGAGAATCGCCTGGGCCGTGGGATAGT
AGGCAATGACCTCGTTTAAATCCGATTTGGACAGCACGAACAGGTTGGAG
TAGCCCTTGGATCGGACATCTGCTGTTCTGCGATCGGCTCCATTTATTCC
CAGCAGACTGATCTCCCCGAACACGGAACCTTCGGTTAGAGTGGCCAGCA
CTACATCGCTACTAGGACCACCCATCACTTGAACCTGTCCCAGTTTCACG
ATATACATCTCTCTGCCCACTTCGCCTTTGCGGCAAACGAAATCTCCTGG
CAAAAATGTGACTGCCCTTAGTTTTAGAACCAGATCTCTGAG
BS15276.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:17:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17922-PA | 3123 | CG17922-RA | 2350..3112 | 792..30 | 3815 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:56:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CngB-RB | 3218 | CG17922-RB | 2366..3133 | 792..25 | 3825 | 99.9 | Minus |
| CngB-RA | 3356 | CG17922-RA | 2504..3271 | 792..25 | 3825 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:56:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21692776..21693543 | 25..792 | 3825 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:56:45 has no hits.
BS15276.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:22:12 Download gff for
BS15276.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17922-PA | 2350..3123 | 17..792 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:57:19 Download gff for
BS15276.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17922-PA | 2350..3123 | 17..792 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 06:30:33 Download gff for
BS15276.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17922-RA | 2504..3277 | 17..792 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:54:12 Download gff for
BS15276.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CngB-RA | 2504..3277 | 17..792 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:54:12 Download gff for
BS15276.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21692770..21693543 | 17..792 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 06:30:33 Download gff for
BS15276.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17580275..17581048 | 17..792 | 99 | | Plus |
BS15276.5prime Sequence
864 bp (746 high quality bases) assembled on 2006-10-24
> BS15276.5prime
GAAGTTATCAGTCGACATGACCAGCATGGCACGTTTTCGGAAGGTGAATC
GCCAAAGTGAGAAGCTCGAACCGGAGGCGAGTGCATCGTTGCTAAAATCA
TCCCCGAATATATTGGAGAACTTTGCCTACGACGAGTTTCAGCCAATACA
AACCAATCACCCGCTTCTAAAGCGGATGGCCACCACACCCGTCGCCCAAT
CCGGCTCCCAGAGCAGCTCCTCTTCCACATCGTCTACGCGTAAAGCGGAG
CCTAAGTTCTGCGACACCCTGGAGCGACATGCCTTCATGCGGAATGTCAT
TAATCAGCAGCCGGAGAGCACACGCCGCTACTCGACTCCTGGCGAAAAGG
AGGCCCAGGTGCGGCGCAGCCTGGAGGAGATCACCAAGGATCTGAAGGAA
ATCGAGCAGTTCGTTAGTGCCACCGAGGAGCTCATGCAGAGGGAGAAGGA
ACAGGAGCAGATGATGTACTCCAACAAGGAGAATAAGTGCCCCAGTCCGG
TGAAGAGGGTTACATATAAAATAAACGCCTACAAGGCGCCGCCTCGAAGA
CATCGTCCTGGAAGTCCACGATTCTACCACTCCAGATTGTACTTTAGGAA
TGGAAAAATTGGATGTGTCGACTCCACGGAGCATCAGAACAATGTGGGCG
CCACTCATGCTCTGGTCAAGCACATACTGCACCATGAGAAGCCCCTAGTG
AGTCCGGATAGTGTGAGGAGAGTGCTCGAGCAGGACAGCTTCGAAATGGT
TCCACTACCAGGAGCTGTTCCTGAAATCGTACCCGATCCAATTGCCATTC
AGCGGGCGGAGGAACTGGCCGCAGCCACTGGCCAGGTCGTTTTGCCCAAA
GAGGAGGAGGAGGA
BS15276.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:17:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17922-PA | 3123 | CG17922-RA | 1..848 | 17..864 | 4240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:07:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CngB-RA | 3356 | CG17922-RA | 155..1002 | 17..864 | 4240 | 100 | Plus |
| CngB-RB | 3218 | CG17922-RB | 42..864 | 42..864 | 4115 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:07:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21695221..21696043 | 864..42 | 4115 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:07:42 has no hits.
BS15276.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:22:13 Download gff for
BS15276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17922-PA | 1..847 | 17..863 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:57:21 Download gff for
BS15276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17922-PA | 1..847 | 17..863 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:50:48 Download gff for
BS15276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17922-RA | 147..1001 | 8..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:27:03 Download gff for
BS15276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CngB-RA | 147..1001 | 8..863 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:27:03 Download gff for
BS15276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21695222..21696041 | 44..863 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:50:48 Download gff for
BS15276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17582727..17583546 | 44..863 | 100 | <- | Minus |
BS15276.pep Sequence
Translation from 16 to 3138
> BS15276.pep
MTSMARFRKVNRQSEKLEPEASASLLKSSPNILENFAYDEFQPIQTNHPL
LKRMATTPVAQSGSQSSSSSTSSTRKAEPKFCDTLERHAFMRNVINQQPE
STRRYSTPGEKEAQVRRSLEEITKDLKEIEQFVSATEELMQREKEQEQMM
YSNKENKCPSPVKRVTYKINAYKAPPRRHRPGSPRFYHSRLYFRNGKIGC
VDSTEHQNNVGATHALVKHILHHEKPLVSPDSVRRVLEQDSFEMVPLPGA
VPEIVPDPIAIQRAEELAAATGQVVLPKEEEEEEKSSPLHQVESQPDVDE
DEQDVQICYNESPELQNEDRNERTQRTPSINESEIVAVDEPDTEMNSDVD
HRKPSSAGSLDSQGQQFLRDQVRHLVRRFTARANKVKSRIELPPTPSSSS
TVSSPSPPPTKSLHPSPQHKVRLVPAGQSPHRGRLFEADTPRSNVWLCSS
LCGANNDERTLDPQGKIYISWLCVVSLSFLYNAWVIPLRASFPFQTKENT
NIWLACDFCADIIYLLDVVFFKHRVMYLFEGFWVKNKNLTRKNYMRKLQF
KLDLLALLPLELLYFKLGTQAVWLRFPRFFKIQSFWEVFRLLDRVISSPH
FVRVAKTLTYMLYMIHITAALYYAYSDYQGLGQNRWVFSGKGHPYVRCFA
FATKTATSIGKNPKPERQGEYVFMTVAWLMGVFVFALLIGQIRDIISTAT
RNKHEYRQLEDETLEYMRRLNLSQEVQSRVKMWFQFTWEQQRTLDESNIL
DALPINLKTDIAISVHIQTLSKVQLFADCEEALLRDLVLKLRAVTFLPGD
FVCRKGEVGREMYIVKLGQVQVMGGPSSDVVLATLTEGSVFGEISLLGIN
GADRRTADVRSKGYSNLFVLSKSDLNEVIAYYPTAQAILKKRARQLMRKN
AAREREEERERARSALQADVVIGNPKTPETAPKLLQTVIQALPFESPAVV
LITRGSKRMRRKRQSVQMETIVEPKMEVTGAAETQDQKGLKTGRCSPDLL
SSIQQELKSKHKFINLTDSEKALISQSANNSLEDMKVVDL*
BS15276.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:02:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CngB-PA | 1040 | CG17922-PA | 1..1040 | 1..1040 | 5353 | 100 | Plus |
| CngB-PB | 987 | CG17922-PB | 1..987 | 54..1040 | 5086 | 100 | Plus |
| CngA-PB | 840 | CG42701-PB | 138..753 | 299..920 | 794 | 32.2 | Plus |
| CG42260-PB | 974 | CG42260-PB | 232..739 | 396..899 | 794 | 35.5 | Plus |
| CngA-PA | 665 | CG7779-PA | 99..578 | 460..920 | 786 | 36.9 | Plus |
