Clone BS15277 Report

Search the DGRC for BS15277

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:152
Well:77
Vector:pDNR-Dual
Associated Gene/TranscriptCG31221-RA
Protein status:BS15277.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15277.3prime Sequence

690 bp (690 high quality bases) assembled on 2006-10-24

> BS15277.3prime
ATGGTCTAGAAAGCTTTCCCCTGAGGAGGCCGGTGTTGACCAGCTTCTCC
AAGAAGAACTTCACATCGCCCAGCTCCGAGTCCTTGATGCCCAGCGACTT
GGGCATGCCCAGATCCCCGTTCTCCACCGCCATGAAAACCGAGCGCAAGT
GTTCCAGGTCCGATCTCATTAGATGAAGGGCAGCTCCAAAATCCTCAATC
GTTTGCGACTCACTCAACGCGATGGCGACCTTCTCGACTCCGCCGAGAGG
TGAAAGGGCATCACGTGCCTTGCTGCCGAAAAGTTTTTCCAGGTAATTGG
GTCCGTGGGAGGCGATCAGGCTCTGGAGGAAGGATGCGGTCTCCTCGACC
GGCGGCCGCTTGGCAGCCGTACATAGACGCATATCCTCATCGTATCCGTC
AGAGCAATCGGGTGCACCATCGCATAAATATTGGATGGAAATGCAATTAC
CATCCCCGGGACACTTGAAGGGCTCATACGGATGACAGGCTTCGCTCCGC
TTCACGATGGGATTGGCCATGTGCCCGTACAAACGACTCAAATCGATGGC
CATGGTGGTCGTGGTGGTCTGCAGGAGGAGCAGACAGACGGCGAATGATG
GCCACATGCTGAGGTGGTGCTGACGCGGCTGCTGATGATGATGATGATGG
TGGTGGTCCATTGCCAGGAAGGACATGTCGACTGATAACT

BS15277.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:17:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG31221-PA 660 CG31221-RA 1..654 676..23 3195 99.5 Minus
CG31221-PB 660 CG31221-RB 1..654 676..23 3195 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:06:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG31221-RC 4352 CG31221-RC 649..1302 676..23 3225 99.5 Minus
CG31221-RB 1633 CG31221-RB 644..1297 676..23 3225 99.5 Minus
CG31221-RA 4352 CG31221-RA 649..1302 676..23 3225 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:06:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19454066..19454265 364..165 1000 100 Minus
3R 32079331 3R 19416205..19416388 676..493 920 100 Minus
3R 32079331 3R 19457118..19457261 166..23 675 97.9 Minus
3R 32079331 3R 19440702..19440831 493..364 650 100 Minus
Blast to na_te.dros performed on 2015-02-12 16:06:57 has no hits.

BS15277.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:22:14 Download gff for BS15277.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31221-PB 1..660 17..676 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:57:23 Download gff for BS15277.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31221-PB 1..660 17..676 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:24:34 Download gff for BS15277.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31221-RA 645..1302 23..682 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:42:16 Download gff for BS15277.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31221-RA 645..1302 23..682 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:42:16 Download gff for BS15277.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 19416201..19416388 493..682 98 -> Minus
3R 19440703..19440831 364..492 100 -> Minus
3R 19454067..19454265 165..363 100 -> Minus
3R 19457120..19457261 23..164 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:24:34 Download gff for BS15277.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15241923..15242110 493..682 98 -> Minus
arm_3R 15266425..15266553 364..492 100 -> Minus
arm_3R 15279789..15279987 165..363 100 -> Minus
arm_3R 15282842..15282983 23..164 97   Minus

BS15277.5prime Sequence

690 bp (690 high quality bases) assembled on 2006-10-24

> BS15277.5prime
GAAGTTATCAGTCGACATGTCCTTCCTGGCAATGGACCACCACCATCATC
ATCATCATCAGCAGCCGCGTCAGCACCACCTCAGCATGTGGCCATCATTC
GCCGTCTGTCTGCTCCTCCTGCAGACCACCACGACCACCATGGCCATCGA
TTTGAGTCGTTTGTACGGGCACATGGCCAATCCCATCGTGAAGCGGAGCG
AAGCCTGTCATCCGTATGAGCCCTTCAAGTGTCCCGGGGATGGTAATTGC
ATTTCCATCCAATATTTATGCGATGGTGCACCCGATTGCTCTGACGGATA
CGATGAGGATATGCGTCTATGTACGGCTGCCAAGCGGCCGCCGGTCGAGG
AGACCGCATCCTTCCTCCAGAGCCTGATCGCCTCCCACGGACCCAATTAC
CTGGAAAAACTTTTCGGCAGCAAGGCACGTGATGCCCTTTCACCTCTCGG
CGGAGTCGAGAAGGTCGCCATCGCGTTGAGTGAGTCGCAAACGATTGAGG
ATTTTGGAGCTGCCCTTCATCTAATGAGATCGGACCTGGAACACTTGCGC
TCGGTTTTCATGGCGGTGGAGAACGGGGATCTGGGCATGCTGAAGTCGCT
GGGCATCAAGGACTCGGAGCTGGGCGATGTGAAGTTCTTCTTGGAGAAGC
TGGTCAACACCGGCTTCCTCGACTGAAAGCTTTCTAGACC

BS15277.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:17:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG31221-PA 660 CG31221-RA 1..660 17..676 3300 100 Plus
CG31221-PB 660 CG31221-RB 1..660 17..676 3300 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:50:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG31221-RC 4352 CG31221-RC 649..1308 17..676 3300 100 Plus
CG31221-RB 1633 CG31221-RB 644..1303 17..676 3300 100 Plus
CG31221-RA 4352 CG31221-RA 649..1308 17..676 3300 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:50:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19454066..19454265 329..528 1000 100 Plus
3R 32079331 3R 19416205..19416388 17..200 920 100 Plus
3R 32079331 3R 19457118..19457267 527..676 750 100 Plus
3R 32079331 3R 19440702..19440831 200..329 650 100 Plus
Blast to na_te.dros performed on 2015-02-13 12:50:52 has no hits.

BS15277.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:22:15 Download gff for BS15277.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31221-PB 1..660 17..676 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:57:24 Download gff for BS15277.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31221-PB 1..660 17..676 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:04:54 Download gff for BS15277.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31221-RA 645..1313 11..680 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:33:07 Download gff for BS15277.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31221-RA 645..1313 11..680 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:33:07 Download gff for BS15277.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 19454067..19454265 330..528 100 -> Plus
3R 19457120..19457272 529..680 98   Plus
3R 19416201..19416388 11..200 98 -> Plus
3R 19440703..19440831 201..329 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:04:54 Download gff for BS15277.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15241923..15242110 11..200 98 -> Plus
arm_3R 15266425..15266553 201..329 100 -> Plus
arm_3R 15279789..15279987 330..528 100 -> Plus
arm_3R 15282842..15282994 529..680 98   Plus

BS15277.complete Sequence

692 bp assembled on 2006-11-01

GenBank Submission: FJ637910

> BS15277.complete
GAAGTTATCAGTCGACATGTCCTTCCTGGCAATGGACCACCACCATCATC
ATCATCATCAGCAGCCGCGTCAGCACCACCTCAGCATGTGGCCATCATTC
GCCGTCTGTCTGCTCCTCCTGCAGACCACCACGACCACCATGGCCATCGA
TTTGAGTCGTTTGTACGGGCACATGGCCAATCCCATCGTGAAGCGGAGCG
AAGCCTGTCATCCGTATGAGCCCTTCAAGTGTCCCGGGGATGGTAATTGC
ATTTCCATCCAATATTTATGCGATGGTGCACCCGATTGCTCTGACGGATA
CGATGAGGATATGCGTCTATGTACGGCTGCCAAGCGGCCGCCGGTCGAGG
AGACCGCATCCTTCCTCCAGAGCCTGATCGCCTCCCACGGACCCAATTAC
CTGGAAAAACTTTTCGGCAGCAAGGCACGTGATGCCCTTTCACCTCTCGG
CGGAGTCGAGAAGGTCGCCATCGCGTTGAGTGAGTCGCAAACGATTGAGG
ATTTTGGAGCTGCCCTTCATCTAATGAGATCGGACCTGGAACACTTGCGC
TCGGTTTTCATGGCGGTGGAGAACGGGGATCTGGGCATGCTGAAGTCGCT
GGGCATCAAGGACTCGGAGCTGGGCGATGTGAAGTTCTTCTTGGAGAAGC
TGGTCAACACCGGCTTCCTCGACTGAAAGCTTTCTAGACCAT

BS15277.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:06:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG31221-RC 765 CG31221-PC 1..660 17..676 3300 100 Plus
CG31221-RB 660 CG31221-PB 1..660 17..676 3300 100 Plus
CG31221-RA 660 CG31221-PA 1..660 17..676 3300 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:06:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG31221-RC 4352 CG31221-RC 649..1308 17..676 3300 100 Plus
CG31221-RB 1633 CG31221-RB 644..1303 17..676 3300 100 Plus
CG31221-RA 4352 CG31221-RA 649..1308 17..676 3300 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:06:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19454066..19454265 329..528 1000 100 Plus
3R 32079331 3R 19416205..19416388 17..200 920 100 Plus
3R 32079331 3R 19457118..19457267 527..676 750 100 Plus
3R 32079331 3R 19440702..19440831 200..329 650 100 Plus
Blast to na_te.dros performed on 2014-11-28 08:06:13 has no hits.

BS15277.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:22:26 Download gff for BS15277.complete
Subject Subject Range Query Range Percent Splice Strand
CG31221-RB 1..660 17..676 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:38:43 Download gff for BS15277.complete
Subject Subject Range Query Range Percent Splice Strand
CG31221-RB 639..1297 17..675 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:12:55 Download gff for BS15277.complete
Subject Subject Range Query Range Percent Splice Strand
CG31221-RA 649..1307 17..675 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:22:26 Download gff for BS15277.complete
Subject Subject Range Query Range Percent Splice Strand
CG31221-RB 635..1303 11..680 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:10:58 Download gff for BS15277.complete
Subject Subject Range Query Range Percent Splice Strand
CG31221-RA 649..1307 17..675 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:10:58 Download gff for BS15277.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19416205..19416388 17..200 100 -> Plus
3R 19440703..19440831 201..329 100 -> Plus
3R 19454067..19454265 330..528 100 -> Plus
3R 19457120..19457266 529..675 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:12:55 Download gff for BS15277.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15279789..15279987 330..528 100 -> Plus
arm_3R 15282842..15282988 529..675 100   Plus
arm_3R 15241927..15242110 17..200 100 -> Plus
arm_3R 15266425..15266553 201..329 100 -> Plus

BS15277.pep Sequence

Translation from 16 to 675

> BS15277.pep
MSFLAMDHHHHHHHQQPRQHHLSMWPSFAVCLLLLQTTTTTMAIDLSRLY
GHMANPIVKRSEACHPYEPFKCPGDGNCISIQYLCDGAPDCSDGYDEDMR
LCTAAKRPPVEETASFLQSLIASHGPNYLEKLFGSKARDALSPLGGVEKV
AIALSESQTIEDFGAALHLMRSDLEHLRSVFMAVENGDLGMLKSLGIKDS
ELGDVKFFLEKLVNTGFLD*

BS15277.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:35:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG31221-PB 219 CG31221-PB 1..219 1..219 1168 100 Plus
CG31221-PA 219 CG31221-PA 1..219 1..219 1168 100 Plus
CG31221-PC 254 CG31221-PC 1..219 1..219 1168 100 Plus