Clone Sequence Records
BS15277.3prime Sequence
690 bp (690 high quality bases) assembled on 2006-10-24
> BS15277.3prime
ATGGTCTAGAAAGCTTTCCCCTGAGGAGGCCGGTGTTGACCAGCTTCTCC
AAGAAGAACTTCACATCGCCCAGCTCCGAGTCCTTGATGCCCAGCGACTT
GGGCATGCCCAGATCCCCGTTCTCCACCGCCATGAAAACCGAGCGCAAGT
GTTCCAGGTCCGATCTCATTAGATGAAGGGCAGCTCCAAAATCCTCAATC
GTTTGCGACTCACTCAACGCGATGGCGACCTTCTCGACTCCGCCGAGAGG
TGAAAGGGCATCACGTGCCTTGCTGCCGAAAAGTTTTTCCAGGTAATTGG
GTCCGTGGGAGGCGATCAGGCTCTGGAGGAAGGATGCGGTCTCCTCGACC
GGCGGCCGCTTGGCAGCCGTACATAGACGCATATCCTCATCGTATCCGTC
AGAGCAATCGGGTGCACCATCGCATAAATATTGGATGGAAATGCAATTAC
CATCCCCGGGACACTTGAAGGGCTCATACGGATGACAGGCTTCGCTCCGC
TTCACGATGGGATTGGCCATGTGCCCGTACAAACGACTCAAATCGATGGC
CATGGTGGTCGTGGTGGTCTGCAGGAGGAGCAGACAGACGGCGAATGATG
GCCACATGCTGAGGTGGTGCTGACGCGGCTGCTGATGATGATGATGATGG
TGGTGGTCCATTGCCAGGAAGGACATGTCGACTGATAACT
BS15277.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:17:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31221-PA | 660 | CG31221-RA | 1..654 | 676..23 | 3195 | 99.5 | Minus |
CG31221-PB | 660 | CG31221-RB | 1..654 | 676..23 | 3195 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:06:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31221-RC | 4352 | CG31221-RC | 649..1302 | 676..23 | 3225 | 99.5 | Minus |
CG31221-RB | 1633 | CG31221-RB | 644..1297 | 676..23 | 3225 | 99.5 | Minus |
CG31221-RA | 4352 | CG31221-RA | 649..1302 | 676..23 | 3225 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:06:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19454066..19454265 | 364..165 | 1000 | 100 | Minus |
3R | 32079331 | 3R | 19416205..19416388 | 676..493 | 920 | 100 | Minus |
3R | 32079331 | 3R | 19457118..19457261 | 166..23 | 675 | 97.9 | Minus |
3R | 32079331 | 3R | 19440702..19440831 | 493..364 | 650 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:06:57 has no hits.
BS15277.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:22:14 Download gff for
BS15277.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31221-PB | 1..660 | 17..676 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:57:23 Download gff for
BS15277.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31221-PB | 1..660 | 17..676 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:24:34 Download gff for
BS15277.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31221-RA | 645..1302 | 23..682 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:42:16 Download gff for
BS15277.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31221-RA | 645..1302 | 23..682 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:42:16 Download gff for
BS15277.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19416201..19416388 | 493..682 | 98 | -> | Minus |
3R | 19440703..19440831 | 364..492 | 100 | -> | Minus |
3R | 19454067..19454265 | 165..363 | 100 | -> | Minus |
3R | 19457120..19457261 | 23..164 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:24:34 Download gff for
BS15277.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15241923..15242110 | 493..682 | 98 | -> | Minus |
arm_3R | 15266425..15266553 | 364..492 | 100 | -> | Minus |
arm_3R | 15279789..15279987 | 165..363 | 100 | -> | Minus |
arm_3R | 15282842..15282983 | 23..164 | 97 | | Minus |
BS15277.5prime Sequence
690 bp (690 high quality bases) assembled on 2006-10-24
> BS15277.5prime
GAAGTTATCAGTCGACATGTCCTTCCTGGCAATGGACCACCACCATCATC
ATCATCATCAGCAGCCGCGTCAGCACCACCTCAGCATGTGGCCATCATTC
GCCGTCTGTCTGCTCCTCCTGCAGACCACCACGACCACCATGGCCATCGA
TTTGAGTCGTTTGTACGGGCACATGGCCAATCCCATCGTGAAGCGGAGCG
AAGCCTGTCATCCGTATGAGCCCTTCAAGTGTCCCGGGGATGGTAATTGC
ATTTCCATCCAATATTTATGCGATGGTGCACCCGATTGCTCTGACGGATA
CGATGAGGATATGCGTCTATGTACGGCTGCCAAGCGGCCGCCGGTCGAGG
AGACCGCATCCTTCCTCCAGAGCCTGATCGCCTCCCACGGACCCAATTAC
CTGGAAAAACTTTTCGGCAGCAAGGCACGTGATGCCCTTTCACCTCTCGG
CGGAGTCGAGAAGGTCGCCATCGCGTTGAGTGAGTCGCAAACGATTGAGG
ATTTTGGAGCTGCCCTTCATCTAATGAGATCGGACCTGGAACACTTGCGC
TCGGTTTTCATGGCGGTGGAGAACGGGGATCTGGGCATGCTGAAGTCGCT
GGGCATCAAGGACTCGGAGCTGGGCGATGTGAAGTTCTTCTTGGAGAAGC
TGGTCAACACCGGCTTCCTCGACTGAAAGCTTTCTAGACC
BS15277.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:17:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31221-PA | 660 | CG31221-RA | 1..660 | 17..676 | 3300 | 100 | Plus |
CG31221-PB | 660 | CG31221-RB | 1..660 | 17..676 | 3300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:50:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31221-RC | 4352 | CG31221-RC | 649..1308 | 17..676 | 3300 | 100 | Plus |
CG31221-RB | 1633 | CG31221-RB | 644..1303 | 17..676 | 3300 | 100 | Plus |
CG31221-RA | 4352 | CG31221-RA | 649..1308 | 17..676 | 3300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:50:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19454066..19454265 | 329..528 | 1000 | 100 | Plus |
3R | 32079331 | 3R | 19416205..19416388 | 17..200 | 920 | 100 | Plus |
3R | 32079331 | 3R | 19457118..19457267 | 527..676 | 750 | 100 | Plus |
3R | 32079331 | 3R | 19440702..19440831 | 200..329 | 650 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:50:52 has no hits.
BS15277.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:22:15 Download gff for
BS15277.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31221-PB | 1..660 | 17..676 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:57:24 Download gff for
BS15277.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31221-PB | 1..660 | 17..676 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:04:54 Download gff for
BS15277.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31221-RA | 645..1313 | 11..680 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:33:07 Download gff for
BS15277.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31221-RA | 645..1313 | 11..680 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:33:07 Download gff for
BS15277.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19454067..19454265 | 330..528 | 100 | -> | Plus |
3R | 19457120..19457272 | 529..680 | 98 | | Plus |
3R | 19416201..19416388 | 11..200 | 98 | -> | Plus |
3R | 19440703..19440831 | 201..329 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:04:54 Download gff for
BS15277.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15241923..15242110 | 11..200 | 98 | -> | Plus |
arm_3R | 15266425..15266553 | 201..329 | 100 | -> | Plus |
arm_3R | 15279789..15279987 | 330..528 | 100 | -> | Plus |
arm_3R | 15282842..15282994 | 529..680 | 98 | | Plus |
BS15277.complete Sequence
692 bp assembled on 2006-11-01
GenBank Submission: FJ637910
> BS15277.complete
GAAGTTATCAGTCGACATGTCCTTCCTGGCAATGGACCACCACCATCATC
ATCATCATCAGCAGCCGCGTCAGCACCACCTCAGCATGTGGCCATCATTC
GCCGTCTGTCTGCTCCTCCTGCAGACCACCACGACCACCATGGCCATCGA
TTTGAGTCGTTTGTACGGGCACATGGCCAATCCCATCGTGAAGCGGAGCG
AAGCCTGTCATCCGTATGAGCCCTTCAAGTGTCCCGGGGATGGTAATTGC
ATTTCCATCCAATATTTATGCGATGGTGCACCCGATTGCTCTGACGGATA
CGATGAGGATATGCGTCTATGTACGGCTGCCAAGCGGCCGCCGGTCGAGG
AGACCGCATCCTTCCTCCAGAGCCTGATCGCCTCCCACGGACCCAATTAC
CTGGAAAAACTTTTCGGCAGCAAGGCACGTGATGCCCTTTCACCTCTCGG
CGGAGTCGAGAAGGTCGCCATCGCGTTGAGTGAGTCGCAAACGATTGAGG
ATTTTGGAGCTGCCCTTCATCTAATGAGATCGGACCTGGAACACTTGCGC
TCGGTTTTCATGGCGGTGGAGAACGGGGATCTGGGCATGCTGAAGTCGCT
GGGCATCAAGGACTCGGAGCTGGGCGATGTGAAGTTCTTCTTGGAGAAGC
TGGTCAACACCGGCTTCCTCGACTGAAAGCTTTCTAGACCAT
BS15277.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:06:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31221-RC | 765 | CG31221-PC | 1..660 | 17..676 | 3300 | 100 | Plus |
CG31221-RB | 660 | CG31221-PB | 1..660 | 17..676 | 3300 | 100 | Plus |
CG31221-RA | 660 | CG31221-PA | 1..660 | 17..676 | 3300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:06:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31221-RC | 4352 | CG31221-RC | 649..1308 | 17..676 | 3300 | 100 | Plus |
CG31221-RB | 1633 | CG31221-RB | 644..1303 | 17..676 | 3300 | 100 | Plus |
CG31221-RA | 4352 | CG31221-RA | 649..1308 | 17..676 | 3300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:06:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19454066..19454265 | 329..528 | 1000 | 100 | Plus |
3R | 32079331 | 3R | 19416205..19416388 | 17..200 | 920 | 100 | Plus |
3R | 32079331 | 3R | 19457118..19457267 | 527..676 | 750 | 100 | Plus |
3R | 32079331 | 3R | 19440702..19440831 | 200..329 | 650 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:06:13 has no hits.
BS15277.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:22:26 Download gff for
BS15277.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31221-RB | 1..660 | 17..676 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:38:43 Download gff for
BS15277.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31221-RB | 639..1297 | 17..675 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:12:55 Download gff for
BS15277.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31221-RA | 649..1307 | 17..675 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:22:26 Download gff for
BS15277.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31221-RB | 635..1303 | 11..680 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:10:58 Download gff for
BS15277.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31221-RA | 649..1307 | 17..675 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:10:58 Download gff for
BS15277.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19416205..19416388 | 17..200 | 100 | -> | Plus |
3R | 19440703..19440831 | 201..329 | 100 | -> | Plus |
3R | 19454067..19454265 | 330..528 | 100 | -> | Plus |
3R | 19457120..19457266 | 529..675 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:12:55 Download gff for
BS15277.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15279789..15279987 | 330..528 | 100 | -> | Plus |
arm_3R | 15282842..15282988 | 529..675 | 100 | | Plus |
arm_3R | 15241927..15242110 | 17..200 | 100 | -> | Plus |
arm_3R | 15266425..15266553 | 201..329 | 100 | -> | Plus |
BS15277.pep Sequence
Translation from 16 to 675
> BS15277.pep
MSFLAMDHHHHHHHQQPRQHHLSMWPSFAVCLLLLQTTTTTMAIDLSRLY
GHMANPIVKRSEACHPYEPFKCPGDGNCISIQYLCDGAPDCSDGYDEDMR
LCTAAKRPPVEETASFLQSLIASHGPNYLEKLFGSKARDALSPLGGVEKV
AIALSESQTIEDFGAALHLMRSDLEHLRSVFMAVENGDLGMLKSLGIKDS
ELGDVKFFLEKLVNTGFLD*
BS15277.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:35:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31221-PB | 219 | CG31221-PB | 1..219 | 1..219 | 1168 | 100 | Plus |
CG31221-PA | 219 | CG31221-PA | 1..219 | 1..219 | 1168 | 100 | Plus |
CG31221-PC | 254 | CG31221-PC | 1..219 | 1..219 | 1168 | 100 | Plus |