Clone Sequence Records
BS15278.3prime Sequence
537 bp (537 high quality bases) assembled on 2006-10-24
> BS15278.3prime
ATGGTCTAGAAAGCTTCTACCCTACCGCCTCCTGACTACGGCGGACGCAC
CTGGTGACCTTGCGCTTGAATTCCGCATAATTCTCCCGGTACTCCTTGGC
CGCATCCACATTGGCGGCCGACTCGTCATTGGGATCGGTGAGCATGGAGA
TAACGGAAAGAAGGATCGTCTCCACGGTGTGGACCGGTAGCCAGCGCTCC
TCGGCCTTCTCGTAGCCCCACTTATCGTCACCAGGTTCGTGGAGGATCGA
GATGCAAACGTCGCCGGCCTTGTCAATATTGGGATGCCAGATTTCGGTGA
TGAACTTCATCTTGGGCGGGCGCAGTGGGTACTCTTTGGGGAAGATCAGG
TGAGCCTTGAAGAAGCCGCCCTCGTATAGCGTATCTGGGGGACCGATGAT
CACCACCTCCCATTTGAAGATGTCGGAGTCGCTGACCAGACCGGCGGAGA
AGCCCTCGACGGGATGGCGTTGTAATTCGGAGAGCTGGCGATTGAGCAGT
AGCGATGCTTGCAGTTCGGACATGTCGACTGATAACT
BS15278.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:17:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9602-PA | 507 | CG9602-RA | 1..496 | 523..28 | 2480 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:31:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ubc87F-RA | 660 | CG9602-RA | 72..574 | 526..24 | 2500 | 99.8 | Minus |
CG40045-RB | 868 | CG40045-RB | 427..722 | 388..93 | 310 | 74.1 | Minus |
CG40045-RA | 740 | CG40045-RA | 299..594 | 388..93 | 310 | 74.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:31:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13717540..13718042 | 24..526 | 2500 | 99.8 | Plus |
3L | 28110227 | 3L | 24035432..24035713 | 374..93 | 270 | 73 | Minus |
Blast to na_te.dros performed on 2015-02-11 03:31:54 has no hits.
BS15278.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:22:16 Download gff for
BS15278.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9602-PA | 1..507 | 17..523 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:57:26 Download gff for
BS15278.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9602-PA | 1..507 | 17..523 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:05:58 Download gff for
BS15278.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9602-RA | 59..582 | 16..537 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:31:44 Download gff for
BS15278.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubc87F-RA | 59..582 | 16..537 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:31:44 Download gff for
BS15278.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13717532..13718050 | 16..537 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:05:58 Download gff for
BS15278.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9543254..9543772 | 16..537 | 98 | | Plus |
BS15278.5prime Sequence
537 bp (537 high quality bases) assembled on 2006-10-24
> BS15278.5prime
GAAGTTATCAGTCGACATGTCCGAACTGCAAGCATCGCTACTGCTCAATC
GCCAGCTCTCCGAATTACAACGCCATCCCGTCGAGGGCTTCTCCGCCGGT
CTGGTCAGCGACTCCGACATCTTCAAATGGGAGGTGGTGATCATCGGTCC
CCCAGATACGCTATACGAGGGCGGCTTCTTCAAGGCTCACCTGATCTTCC
CCAAAGAGTACCCACTGCGCCCGCCCAAGATGAAGTTCATCACCGAAATC
TGGCATCCCAATATTGACAAGGCCGGCGACGTTTGCATCTCGATCCTCCA
CGAACCTGGTGACGATAAGTGGGGCTACGAGAAGGCCGAGGAGCGCTGGC
TACCGGTCCACACCGTGGAGACGATCCTTCTTTCCGTTATCTCCATGCTC
ACCGATCCCAATGACGAGTCGGCCGCCAATGTGGATGCGGCCAAGGAGTA
CCGGGAGAATTATGCGGAATTCAAGCGCAAGGTCACCAGGTGCGTCCGCC
GTAGTCAGGAGGAGGTGGAATAGAAGCTTTCTAGACC
BS15278.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:17:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9602-PA | 507 | CG9602-RA | 1..507 | 17..523 | 2535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:53:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ubc87F-RA | 660 | CG9602-RA | 72..582 | 14..524 | 2555 | 100 | Plus |
CG40045-RB | 868 | CG40045-RB | 427..722 | 152..447 | 310 | 74.1 | Plus |
CG40045-RA | 740 | CG40045-RA | 299..594 | 152..447 | 310 | 74.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:53:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13717532..13718042 | 524..14 | 2555 | 100 | Minus |
3L | 28110227 | 3L | 24035432..24035713 | 166..447 | 270 | 73 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:53:45 has no hits.
BS15278.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:22:17 Download gff for
BS15278.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9602-PA | 1..507 | 17..523 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:57:27 Download gff for
BS15278.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9602-PA | 1..507 | 17..523 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:54:03 Download gff for
BS15278.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9602-RA | 58..582 | 2..524 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:55:22 Download gff for
BS15278.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubc87F-RA | 58..582 | 2..524 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:55:22 Download gff for
BS15278.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13717532..13718051 | 1..524 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:54:03 Download gff for
BS15278.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9543254..9543773 | 1..524 | 99 | | Minus |
BS15278.complete Sequence
539 bp assembled on 2006-11-01
GenBank Submission: FJ637911
> BS15278.complete
GAAGTTATCAGTCGACATGTCCGAACTGCAAGCATCGCTACTGCTCAATC
GCCAGCTCTCCGAATTACAACGCCATCCCGTCGAGGGCTTCTCCGCCGGT
CTGGTCAGCGACTCCGACATCTTCAAATGGGAGGTGGTGATCATCGGTCC
CCCAGATACGCTATACGAGGGCGGCTTCTTCAAGGCTCACCTGATCTTCC
CCAAAGAGTACCCACTGCGCCCGCCCAAGATGAAGTTCATCACCGAAATC
TGGCATCCCAATATTGACAAGGCCGGCGACGTTTGCATCTCGATCCTCCA
CGAACCTGGTGACGATAAGTGGGGCTACGAGAAGGCCGAGGAGCGCTGGC
TACCGGTCCACACCGTGGAGACGATCCTTCTTTCCGTTATCTCCATGCTC
ACCGATCCCAATGACGAGTCGGCCGCCAATGTGGATGCGGCCAAGGAGTA
CCGGGAGAATTATGCGGAATTCAAGCGCAAGGTCACCAGGTGCGTCCGCC
GTAGTCAGGAGGAGGTGGAATAGAAGCTTTCTAGACCAT
BS15278.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:55:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ubc87F-RA | 507 | CG9602-PA | 1..507 | 17..523 | 2535 | 100 | Plus |
CG40045-RA | 507 | CG40045-PA | 136..431 | 152..447 | 310 | 73.6 | Plus |
CG40045-RD | 504 | CG40045-PD | 147..428 | 166..447 | 270 | 73 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:55:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ubc87F-RA | 660 | CG9602-RA | 72..582 | 14..524 | 2555 | 100 | Plus |
CG40045-RB | 868 | CG40045-RB | 427..722 | 152..447 | 310 | 73.6 | Plus |
CG40045-RA | 740 | CG40045-RA | 299..594 | 152..447 | 310 | 73.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:55:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13717532..13718042 | 524..14 | 2555 | 100 | Minus |
3L | 28110227 | 3L | 24035432..24035713 | 166..447 | 270 | 73 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:55:22 has no hits.
BS15278.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:20:59 Download gff for
BS15278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9602-RA | 1..507 | 17..523 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:52:45 Download gff for
BS15278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9602-RA | 48..572 | 2..524 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:56 Download gff for
BS15278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9602-RA | 75..581 | 17..523 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:21:00 Download gff for
BS15278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9602-RA | 48..572 | 2..524 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:57 Download gff for
BS15278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubc87F-RA | 75..581 | 17..523 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:57 Download gff for
BS15278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13717533..13718039 | 17..523 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:56 Download gff for
BS15278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9543255..9543761 | 17..523 | 100 | | Minus |
BS15278.pep Sequence
Translation from 16 to 522
> BS15278.pep
MSELQASLLLNRQLSELQRHPVEGFSAGLVSDSDIFKWEVVIIGPPDTLY
EGGFFKAHLIFPKEYPLRPPKMKFITEIWHPNIDKAGDVCISILHEPGDD
KWGYEKAEERWLPVHTVETILLSVISMLTDPNDESAANVDAAKEYRENYA
EFKRKVTRCVRRSQEEVE*
BS15278.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:36:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ubc87F-PA | 168 | CG9602-PA | 1..168 | 1..168 | 890 | 100 | Plus |
CG40045-PA | 168 | CG40045-PA | 1..166 | 1..166 | 772 | 83.1 | Plus |
CG40045-PD | 167 | CG40045-PD | 1..165 | 1..166 | 753 | 82.5 | Plus |
CG40045-PC | 132 | CG40045-PC | 15..130 | 51..166 | 567 | 87.1 | Plus |
CG40045-PB | 97 | CG40045-PB | 1..95 | 72..166 | 456 | 86.3 | Plus |