Clone BS15278 Report

Search the DGRC for BS15278

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:152
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptUbc87F-RA
Protein status:BS15278.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15278.3prime Sequence

537 bp (537 high quality bases) assembled on 2006-10-24

> BS15278.3prime
ATGGTCTAGAAAGCTTCTACCCTACCGCCTCCTGACTACGGCGGACGCAC
CTGGTGACCTTGCGCTTGAATTCCGCATAATTCTCCCGGTACTCCTTGGC
CGCATCCACATTGGCGGCCGACTCGTCATTGGGATCGGTGAGCATGGAGA
TAACGGAAAGAAGGATCGTCTCCACGGTGTGGACCGGTAGCCAGCGCTCC
TCGGCCTTCTCGTAGCCCCACTTATCGTCACCAGGTTCGTGGAGGATCGA
GATGCAAACGTCGCCGGCCTTGTCAATATTGGGATGCCAGATTTCGGTGA
TGAACTTCATCTTGGGCGGGCGCAGTGGGTACTCTTTGGGGAAGATCAGG
TGAGCCTTGAAGAAGCCGCCCTCGTATAGCGTATCTGGGGGACCGATGAT
CACCACCTCCCATTTGAAGATGTCGGAGTCGCTGACCAGACCGGCGGAGA
AGCCCTCGACGGGATGGCGTTGTAATTCGGAGAGCTGGCGATTGAGCAGT
AGCGATGCTTGCAGTTCGGACATGTCGACTGATAACT

BS15278.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:17:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG9602-PA 507 CG9602-RA 1..496 523..28 2480 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:31:57
Subject Length Description Subject Range Query Range Score Percent Strand
Ubc87F-RA 660 CG9602-RA 72..574 526..24 2500 99.8 Minus
CG40045-RB 868 CG40045-RB 427..722 388..93 310 74.1 Minus
CG40045-RA 740 CG40045-RA 299..594 388..93 310 74.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:31:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13717540..13718042 24..526 2500 99.8 Plus
3L 28110227 3L 24035432..24035713 374..93 270 73 Minus
Blast to na_te.dros performed on 2015-02-11 03:31:54 has no hits.

BS15278.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:22:16 Download gff for BS15278.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9602-PA 1..507 17..523 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:57:26 Download gff for BS15278.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9602-PA 1..507 17..523 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:05:58 Download gff for BS15278.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9602-RA 59..582 16..537 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:31:44 Download gff for BS15278.3prime
Subject Subject Range Query Range Percent Splice Strand
Ubc87F-RA 59..582 16..537 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:31:44 Download gff for BS15278.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 13717532..13718050 16..537 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:05:58 Download gff for BS15278.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9543254..9543772 16..537 98   Plus

BS15278.5prime Sequence

537 bp (537 high quality bases) assembled on 2006-10-24

> BS15278.5prime
GAAGTTATCAGTCGACATGTCCGAACTGCAAGCATCGCTACTGCTCAATC
GCCAGCTCTCCGAATTACAACGCCATCCCGTCGAGGGCTTCTCCGCCGGT
CTGGTCAGCGACTCCGACATCTTCAAATGGGAGGTGGTGATCATCGGTCC
CCCAGATACGCTATACGAGGGCGGCTTCTTCAAGGCTCACCTGATCTTCC
CCAAAGAGTACCCACTGCGCCCGCCCAAGATGAAGTTCATCACCGAAATC
TGGCATCCCAATATTGACAAGGCCGGCGACGTTTGCATCTCGATCCTCCA
CGAACCTGGTGACGATAAGTGGGGCTACGAGAAGGCCGAGGAGCGCTGGC
TACCGGTCCACACCGTGGAGACGATCCTTCTTTCCGTTATCTCCATGCTC
ACCGATCCCAATGACGAGTCGGCCGCCAATGTGGATGCGGCCAAGGAGTA
CCGGGAGAATTATGCGGAATTCAAGCGCAAGGTCACCAGGTGCGTCCGCC
GTAGTCAGGAGGAGGTGGAATAGAAGCTTTCTAGACC

BS15278.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:17:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG9602-PA 507 CG9602-RA 1..507 17..523 2535 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:53:46
Subject Length Description Subject Range Query Range Score Percent Strand
Ubc87F-RA 660 CG9602-RA 72..582 14..524 2555 100 Plus
CG40045-RB 868 CG40045-RB 427..722 152..447 310 74.1 Plus
CG40045-RA 740 CG40045-RA 299..594 152..447 310 74.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:53:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13717532..13718042 524..14 2555 100 Minus
3L 28110227 3L 24035432..24035713 166..447 270 73 Plus
Blast to na_te.dros performed on 2015-02-13 05:53:45 has no hits.

BS15278.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:22:17 Download gff for BS15278.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9602-PA 1..507 17..523 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:57:27 Download gff for BS15278.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9602-PA 1..507 17..523 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:54:03 Download gff for BS15278.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9602-RA 58..582 2..524 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:55:22 Download gff for BS15278.5prime
Subject Subject Range Query Range Percent Splice Strand
Ubc87F-RA 58..582 2..524 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:55:22 Download gff for BS15278.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13717532..13718051 1..524 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:54:03 Download gff for BS15278.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9543254..9543773 1..524 99   Minus

BS15278.complete Sequence

539 bp assembled on 2006-11-01

GenBank Submission: FJ637911

> BS15278.complete
GAAGTTATCAGTCGACATGTCCGAACTGCAAGCATCGCTACTGCTCAATC
GCCAGCTCTCCGAATTACAACGCCATCCCGTCGAGGGCTTCTCCGCCGGT
CTGGTCAGCGACTCCGACATCTTCAAATGGGAGGTGGTGATCATCGGTCC
CCCAGATACGCTATACGAGGGCGGCTTCTTCAAGGCTCACCTGATCTTCC
CCAAAGAGTACCCACTGCGCCCGCCCAAGATGAAGTTCATCACCGAAATC
TGGCATCCCAATATTGACAAGGCCGGCGACGTTTGCATCTCGATCCTCCA
CGAACCTGGTGACGATAAGTGGGGCTACGAGAAGGCCGAGGAGCGCTGGC
TACCGGTCCACACCGTGGAGACGATCCTTCTTTCCGTTATCTCCATGCTC
ACCGATCCCAATGACGAGTCGGCCGCCAATGTGGATGCGGCCAAGGAGTA
CCGGGAGAATTATGCGGAATTCAAGCGCAAGGTCACCAGGTGCGTCCGCC
GTAGTCAGGAGGAGGTGGAATAGAAGCTTTCTAGACCAT

BS15278.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:55:23
Subject Length Description Subject Range Query Range Score Percent Strand
Ubc87F-RA 507 CG9602-PA 1..507 17..523 2535 100 Plus
CG40045-RA 507 CG40045-PA 136..431 152..447 310 73.6 Plus
CG40045-RD 504 CG40045-PD 147..428 166..447 270 73 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:55:24
Subject Length Description Subject Range Query Range Score Percent Strand
Ubc87F-RA 660 CG9602-RA 72..582 14..524 2555 100 Plus
CG40045-RB 868 CG40045-RB 427..722 152..447 310 73.6 Plus
CG40045-RA 740 CG40045-RA 299..594 152..447 310 73.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:55:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13717532..13718042 524..14 2555 100 Minus
3L 28110227 3L 24035432..24035713 166..447 270 73 Plus
Blast to na_te.dros performed on 2014-11-27 20:55:22 has no hits.

BS15278.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:20:59 Download gff for BS15278.complete
Subject Subject Range Query Range Percent Splice Strand
CG9602-RA 1..507 17..523 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:52:45 Download gff for BS15278.complete
Subject Subject Range Query Range Percent Splice Strand
CG9602-RA 48..572 2..524 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:56 Download gff for BS15278.complete
Subject Subject Range Query Range Percent Splice Strand
CG9602-RA 75..581 17..523 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:21:00 Download gff for BS15278.complete
Subject Subject Range Query Range Percent Splice Strand
CG9602-RA 48..572 2..524 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:57 Download gff for BS15278.complete
Subject Subject Range Query Range Percent Splice Strand
Ubc87F-RA 75..581 17..523 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:57 Download gff for BS15278.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13717533..13718039 17..523 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:56 Download gff for BS15278.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9543255..9543761 17..523 100   Minus

BS15278.pep Sequence

Translation from 16 to 522

> BS15278.pep
MSELQASLLLNRQLSELQRHPVEGFSAGLVSDSDIFKWEVVIIGPPDTLY
EGGFFKAHLIFPKEYPLRPPKMKFITEIWHPNIDKAGDVCISILHEPGDD
KWGYEKAEERWLPVHTVETILLSVISMLTDPNDESAANVDAAKEYRENYA
EFKRKVTRCVRRSQEEVE*

BS15278.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:36:09
Subject Length Description Subject Range Query Range Score Percent Strand
Ubc87F-PA 168 CG9602-PA 1..168 1..168 890 100 Plus
CG40045-PA 168 CG40045-PA 1..166 1..166 772 83.1 Plus
CG40045-PD 167 CG40045-PD 1..165 1..166 753 82.5 Plus
CG40045-PC 132 CG40045-PC 15..130 51..166 567 87.1 Plus
CG40045-PB 97 CG40045-PB 1..95 72..166 456 86.3 Plus