Clone Sequence Records
BS15279.complete Sequence
974 bp assembled on 2010-02-09
GenBank Submission: KX800725
> BS15279.complete
GAAGTTATCAGTCGACATGACGGAATTCGATTTTGTGCCACTCGCCGTGG
GTGTGGTAGCCGTACTCGCCGGCGCCCTGATCGTCCACTATCTGCTGAAT
AAGAAGTCCACGAAACCACGCCGGGAACCCAATCGCACCGCTCGGCTGCG
CACACTTGTGGATCCCAATGACAAGTACCTGCTGCCTCTCATCGAAAAGG
AGAATCTGAGCCATGACACTAGGAGATTCCGGTTTGGATTGCCCTCCAAG
CAGCATGTCCTTGGCCTGCCCGTTGGCCAGCACATTCATCTGATCGCCAC
CATCGACAATGAGCTAATAATTCGGCCATACACTCCTATATCGTCTGATG
AGGATGTGGGCTACGTGGACCTAGTCGTCAAGGTGTACTTCAAGGATTCG
CATCCCAAGTTCCCGGCCGGCGGCAAAATGACACAACACCTGGAGCAGCT
CGAGTTGGGGGACAAGATCTCGTTCCGTGGTCCCTCGGGTAGGCTACAAT
ATCTCGGCAATGGCACCTTCTCCATCAAAAAGTTGCGCAAGGATCCTCCA
AAGCACGTGACCGCCAAGCGGGTCAACATGATTGCCGGCGGCACTGGCAT
TACTCCAATGCTTCAATTGGCCAGGGAAGTTCTCAAGCGCAGCGATAAGG
ATAAGACTGAACTGGCGTTGCTGTTCGCCAATCAGAGCGAAAAGGACATT
CTACTGCGTGCAGAGTTGGACGAACTGGCCCAGAAGCATCCTGACCAGTT
CAAGATCTGGTACACAGTCGACAAGGCAAACGAAGGTTGGCAGTATAGCG
TTGGCTTCATCAATGAGGAAATGATCGCCGCCCACCTGCTTCCGGCCAAG
GACGATACCATTGTGTTGCTTTGCGGCCCACCACCAATGATTAACTTTGC
CTGCAATCCGGCGCTGGACAAGCTTGGCTACCATCCGGACACCCGTTTTG
CCTACTAAAAGCTTTCTAGACCAT
BS15279.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:34:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5946-RA | 942 | CG5946-PA | 1..942 | 17..958 | 4695 | 99.9 | Plus |
CG5946-RF | 951 | CG5946-PF | 23..951 | 30..958 | 4630 | 99.9 | Plus |
CG5946-RB | 951 | CG5946-PB | 23..951 | 30..958 | 4630 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:34:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5946-RA | 1224 | CG5946-RA | 122..1063 | 17..958 | 4695 | 99.9 | Plus |
CG5946-RF | 1460 | CG5946-RF | 371..1299 | 30..958 | 4630 | 99.9 | Plus |
CG5946-RB | 1686 | CG5946-RB | 309..1237 | 30..958 | 4630 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:33:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11818254..11818907 | 685..32 | 3255 | 99.8 | Minus |
3L | 28110227 | 3L | 11817144..11817318 | 958..784 | 875 | 100 | Minus |
3L | 28110227 | 3L | 11818086..11818189 | 787..684 | 520 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:33:59 has no hits.
BS15279.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:12:18 Download gff for
BS15279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5946-RA | 115..1054 | 17..956 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:01:57 Download gff for
BS15279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5946-RA | 122..1061 | 17..956 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:03:04 Download gff for
BS15279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5946-RA | 115..1054 | 17..956 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:31:46 Download gff for
BS15279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5946-RA | 122..1061 | 17..956 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:31:46 Download gff for
BS15279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11817146..11817316 | 786..956 | 100 | <- | Minus |
3L | 11818088..11818187 | 686..785 | 100 | <- | Minus |
3L | 11818254..11818907 | 32..685 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:01:57 Download gff for
BS15279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11810246..11810416 | 786..956 | 100 | <- | Minus |
arm_3L | 11811188..11811287 | 686..785 | 100 | <- | Minus |
arm_3L | 11811354..11812007 | 32..685 | 99 | <- | Minus |
BS15279.3prime Sequence
776 bp (748 high quality bases) assembled on 2006-10-24
> BS15279.3prime
ATGGTCTAGAAAGCTTTTACTTGGCAAAACGGGTGTCCGGATGGTAGCCA
AGCTTGTCCAGCGCCGGATTGCAGGCAAAGTTAATCATTGGTGGTGGGCC
GCAAAGCAACACAATGGTATCGTCCTTGGCCGGAAGCAGGTGGGCGGCGA
TCATTTCCTCATTGATGAAGCCAACGCTATACTGCCAACCTTCGTTTGCC
TTGTCGACTGTGTACCAGATCTTGAACTGGTCAGGATGCTTCTGGGCCAG
TTCGTCCAACTCTGCACGCAGTAGAATGTCCTTTTCGCTCTGATTGGCGA
ACAGCAACGCCAGTTCAGTCTTATCCTTATCGCTGCGCTTGAGAACTTCC
CTGGCCAATTGAAGCATTGGAGTAATGCCAGTGCCGCCGGCAATCATGTT
GACCCGCTTGGCGGTCACGTGCTTTGGAGGATCCTTGCGCAACTTTTTGA
TGGAGAAGGTGCCATTGCCGAGATATTGTAGCCTACCCGAGGGACCACGG
AACGAGATCTTGTCCCCCAACTCGAGCTGCTCCAGGTGTTGTGTCATTTT
GCCGCCGGCCGGGAACTTGGGATGCGAATCCTTGAAGTACACCTTGACGA
CTAGGTCCACGTAGCCCACATCCTCATCAGACGATATAGGAGTGTATGGC
CGAATTATTAGCTCATTGTCGATGGTGGCGATCAGATGAATGTGCTGGCC
AACGGGCAGGCCAAGGACATGCTGCTTGGAGGGCAATCCAAACCGGAATC
TCCTAGTGTCATGGCTCAGATTCTCC
BS15279.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:17:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5946-PB | 951 | CG5946-RB | 192..945 | 776..23 | 3745 | 99.8 | Minus |
CG5946-PA | 942 | CG5946-RA | 183..936 | 776..23 | 3745 | 99.8 | Minus |
CG5946-PC | 942 | CG5946-RC | 183..769 | 776..190 | 2910 | 99.8 | Minus |
CG5946-PD | 951 | CG5946-RD | 192..778 | 776..190 | 2910 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:34:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5946-RF | 1460 | CG5946-RF | 540..1293 | 776..23 | 3755 | 99.9 | Minus |
CG5946-RA | 1224 | CG5946-RA | 304..1057 | 776..23 | 3755 | 99.9 | Minus |
CG5946-RB | 1686 | CG5946-RB | 478..1231 | 776..23 | 3755 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:34:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11818254..11818740 | 290..776 | 2420 | 99.8 | Plus |
3L | 28110227 | 3L | 11817150..11817318 | 23..191 | 845 | 100 | Plus |
3L | 28110227 | 3L | 11818086..11818189 | 188..291 | 520 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:34:16 has no hits.
BS15279.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:22:18 Download gff for
BS15279.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5946-PA | 183..942 | 17..776 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:57:29 Download gff for
BS15279.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5946-PA | 183..942 | 17..776 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:30:08 Download gff for
BS15279.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5946-RB | 478..1237 | 17..776 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:23:36 Download gff for
BS15279.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5946-RB | 478..1237 | 17..776 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:23:36 Download gff for
BS15279.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11817144..11817316 | 17..189 | 98 | <- | Plus |
3L | 11818088..11818187 | 190..289 | 100 | <- | Plus |
3L | 11818254..11818740 | 290..776 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:30:08 Download gff for
BS15279.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11810244..11810416 | 17..189 | 98 | <- | Plus |
arm_3L | 11811188..11811287 | 190..289 | 100 | <- | Plus |
arm_3L | 11811354..11811840 | 290..776 | 99 | | Plus |
BS15279.5prime Sequence
844 bp (780 high quality bases) assembled on 2006-10-24
> BS15279.5prime
GAAGTTATCAGTCGACATGACGGAATTCGATTTTGTGCCACTCGCCGTGG
GTGTGGTAGCCGTACTCGCCGGCGCCCTGATCGTCCACTATCTGCTGAAT
AAGAAGTCCACGAAACCACGCCGGGAACCCAATCGCACCGCTCGGCTGCG
CACACTTGTGGATCCCAATGACAAGTACCTGCTGCCTCTCATCGAAAAGG
AGAATCTGAGCCATGACACTAGGAGATTCCGGTTTGGATTGCCCTCCAAG
CAGCATGTCCTTGGCCTGCCCGTTGGCCAGCACATTCATCTGATCGCCAC
CATCGACAATGAGCTAATAATTCGGCCATACACTCCTATATCGTCTGATG
AGGATGTGGGCTACGTGGACCTAGTCGTCAAGGTGTACTTCAAGGATTCG
CATCCCAAGTTCCCGGCCGGCGGCAAAATGACACAACACCTGGAGCAGCT
CGAGTTGGGGGACAAGATCTCGTTCCGTGGTCCCTCGGGTAGGCTACAAT
ATCTCGGCAATGGCACCTTCTCCATCAAAAAGTTGCGCAAGGATCCTCCA
AAGCACGTGACCGCCAAGCGGGTCAACATGATTGCCGGCGGCACTGGCAT
TACTCCAATGCTTCAATTGGCCAGGGAAGTTCTCAAGCGCAGCGATAAGG
ATAAGACTGAACTGGCGTTGCTGTTCGCCAATCAGAGCGAANAGGACATT
CTACTGCGTGCAGAGTTGGACGAACTGGCCCAGAAGCATCCTGACCAGTT
CAAGATCTGGTACACAGTCGACAAGGCAAACGAAGGTTGGCAGTATAGCG
TTGGCTTCATCAATGAGGAAATGATCGCCGCCCACCTGCTTCCG
BS15279.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:17:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5946-PA | 942 | CG5946-RA | 1..828 | 17..844 | 4096 | 99.7 | Plus |
CG5946-PB | 951 | CG5946-RB | 23..837 | 30..844 | 4031 | 99.7 | Plus |
CG5946-PC | 942 | CG5946-RC | 1..769 | 17..785 | 3801 | 99.7 | Plus |
CG5946-PD | 951 | CG5946-RD | 23..778 | 30..785 | 3736 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:19:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5946-RA | 1224 | CG5946-RA | 122..949 | 17..844 | 4114 | 99.8 | Plus |
CG5946-RF | 1460 | CG5946-RF | 371..1185 | 30..844 | 4049 | 99.8 | Plus |
CG5946-RB | 1686 | CG5946-RB | 309..1123 | 30..844 | 4049 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:19:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11818254..11818907 | 685..32 | 3255 | 99.8 | Minus |
3L | 28110227 | 3L | 11818086..11818189 | 787..684 | 509 | 99 | Minus |
3L | 28110227 | 3L | 11817258..11817318 | 844..784 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:19:20 has no hits.
BS15279.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:22:20 Download gff for
BS15279.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5946-PA | 1..828 | 17..844 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:57:31 Download gff for
BS15279.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5946-PA | 1..828 | 17..844 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:20:57 Download gff for
BS15279.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5946-RA | 122..949 | 17..844 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:05:46 Download gff for
BS15279.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5946-RA | 122..949 | 17..844 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:05:46 Download gff for
BS15279.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11817258..11817316 | 786..844 | 100 | <- | Minus |
3L | 11818088..11818187 | 686..785 | 99 | <- | Minus |
3L | 11818254..11818907 | 32..685 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:20:57 Download gff for
BS15279.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11810358..11810416 | 786..844 | 100 | <- | Minus |
arm_3L | 11811188..11811287 | 686..785 | 99 | <- | Minus |
arm_3L | 11811354..11812007 | 32..685 | 99 | <- | Minus |
BS15279.pep Sequence
Translation from 16 to 957
> BS15279.pep
MTEFDFVPLAVGVVAVLAGALIVHYLLNKKSTKPRREPNRTARLRTLVDP
NDKYLLPLIEKENLSHDTRRFRFGLPSKQHVLGLPVGQHIHLIATIDNEL
IIRPYTPISSDEDVGYVDLVVKVYFKDSHPKFPAGGKMTQHLEQLELGDK
ISFRGPSGRLQYLGNGTFSIKKLRKDPPKHVTAKRVNMIAGGTGITPMLQ
LAREVLKRSDKDKTELALLFANQSEKDILLRAELDELAQKHPDQFKIWYT
VDKANEGWQYSVGFINEEMIAAHLLPAKDDTIVLLCGPPPMINFACNPAL
DKLGYHPDTRFAY*
BS15279.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:12:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5946-PA | 313 | CG5946-PA | 1..313 | 1..313 | 1638 | 100 | Plus |
CG5946-PF | 316 | CG5946-PF | 4..316 | 1..313 | 1616 | 98.7 | Plus |
CG5946-PB | 316 | CG5946-PB | 4..316 | 1..313 | 1616 | 98.7 | Plus |
CG5946-PC | 313 | CG5946-PC | 1..313 | 1..313 | 1503 | 90.4 | Plus |
CG5946-PD | 316 | CG5946-PD | 4..316 | 1..313 | 1481 | 89.1 | Plus |