Clone BS15279 Report

Search the DGRC for BS15279

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:152
Well:79
Vector:pDNR-Dual
Associated Gene/TranscriptCG5946-RA
Protein status:BS15279.pep: full length peptide match
Sequenced Size:974

Clone Sequence Records

BS15279.complete Sequence

974 bp assembled on 2010-02-09

GenBank Submission: KX800725

> BS15279.complete
GAAGTTATCAGTCGACATGACGGAATTCGATTTTGTGCCACTCGCCGTGG
GTGTGGTAGCCGTACTCGCCGGCGCCCTGATCGTCCACTATCTGCTGAAT
AAGAAGTCCACGAAACCACGCCGGGAACCCAATCGCACCGCTCGGCTGCG
CACACTTGTGGATCCCAATGACAAGTACCTGCTGCCTCTCATCGAAAAGG
AGAATCTGAGCCATGACACTAGGAGATTCCGGTTTGGATTGCCCTCCAAG
CAGCATGTCCTTGGCCTGCCCGTTGGCCAGCACATTCATCTGATCGCCAC
CATCGACAATGAGCTAATAATTCGGCCATACACTCCTATATCGTCTGATG
AGGATGTGGGCTACGTGGACCTAGTCGTCAAGGTGTACTTCAAGGATTCG
CATCCCAAGTTCCCGGCCGGCGGCAAAATGACACAACACCTGGAGCAGCT
CGAGTTGGGGGACAAGATCTCGTTCCGTGGTCCCTCGGGTAGGCTACAAT
ATCTCGGCAATGGCACCTTCTCCATCAAAAAGTTGCGCAAGGATCCTCCA
AAGCACGTGACCGCCAAGCGGGTCAACATGATTGCCGGCGGCACTGGCAT
TACTCCAATGCTTCAATTGGCCAGGGAAGTTCTCAAGCGCAGCGATAAGG
ATAAGACTGAACTGGCGTTGCTGTTCGCCAATCAGAGCGAAAAGGACATT
CTACTGCGTGCAGAGTTGGACGAACTGGCCCAGAAGCATCCTGACCAGTT
CAAGATCTGGTACACAGTCGACAAGGCAAACGAAGGTTGGCAGTATAGCG
TTGGCTTCATCAATGAGGAAATGATCGCCGCCCACCTGCTTCCGGCCAAG
GACGATACCATTGTGTTGCTTTGCGGCCCACCACCAATGATTAACTTTGC
CTGCAATCCGGCGCTGGACAAGCTTGGCTACCATCCGGACACCCGTTTTG
CCTACTAAAAGCTTTCTAGACCAT

BS15279.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:34:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG5946-RA 942 CG5946-PA 1..942 17..958 4695 99.9 Plus
CG5946-RF 951 CG5946-PF 23..951 30..958 4630 99.9 Plus
CG5946-RB 951 CG5946-PB 23..951 30..958 4630 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:34:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG5946-RA 1224 CG5946-RA 122..1063 17..958 4695 99.9 Plus
CG5946-RF 1460 CG5946-RF 371..1299 30..958 4630 99.9 Plus
CG5946-RB 1686 CG5946-RB 309..1237 30..958 4630 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:33:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11818254..11818907 685..32 3255 99.8 Minus
3L 28110227 3L 11817144..11817318 958..784 875 100 Minus
3L 28110227 3L 11818086..11818189 787..684 520 100 Minus
Blast to na_te.dros performed on 2014-11-28 04:33:59 has no hits.

BS15279.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:12:18 Download gff for BS15279.complete
Subject Subject Range Query Range Percent Splice Strand
CG5946-RA 115..1054 17..956 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:01:57 Download gff for BS15279.complete
Subject Subject Range Query Range Percent Splice Strand
CG5946-RA 122..1061 17..956 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:03:04 Download gff for BS15279.complete
Subject Subject Range Query Range Percent Splice Strand
CG5946-RA 115..1054 17..956 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:31:46 Download gff for BS15279.complete
Subject Subject Range Query Range Percent Splice Strand
CG5946-RA 122..1061 17..956 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:31:46 Download gff for BS15279.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11817146..11817316 786..956 100 <- Minus
3L 11818088..11818187 686..785 100 <- Minus
3L 11818254..11818907 32..685 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:01:57 Download gff for BS15279.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11810246..11810416 786..956 100 <- Minus
arm_3L 11811188..11811287 686..785 100 <- Minus
arm_3L 11811354..11812007 32..685 99 <- Minus

BS15279.3prime Sequence

776 bp (748 high quality bases) assembled on 2006-10-24

> BS15279.3prime
ATGGTCTAGAAAGCTTTTACTTGGCAAAACGGGTGTCCGGATGGTAGCCA
AGCTTGTCCAGCGCCGGATTGCAGGCAAAGTTAATCATTGGTGGTGGGCC
GCAAAGCAACACAATGGTATCGTCCTTGGCCGGAAGCAGGTGGGCGGCGA
TCATTTCCTCATTGATGAAGCCAACGCTATACTGCCAACCTTCGTTTGCC
TTGTCGACTGTGTACCAGATCTTGAACTGGTCAGGATGCTTCTGGGCCAG
TTCGTCCAACTCTGCACGCAGTAGAATGTCCTTTTCGCTCTGATTGGCGA
ACAGCAACGCCAGTTCAGTCTTATCCTTATCGCTGCGCTTGAGAACTTCC
CTGGCCAATTGAAGCATTGGAGTAATGCCAGTGCCGCCGGCAATCATGTT
GACCCGCTTGGCGGTCACGTGCTTTGGAGGATCCTTGCGCAACTTTTTGA
TGGAGAAGGTGCCATTGCCGAGATATTGTAGCCTACCCGAGGGACCACGG
AACGAGATCTTGTCCCCCAACTCGAGCTGCTCCAGGTGTTGTGTCATTTT
GCCGCCGGCCGGGAACTTGGGATGCGAATCCTTGAAGTACACCTTGACGA
CTAGGTCCACGTAGCCCACATCCTCATCAGACGATATAGGAGTGTATGGC
CGAATTATTAGCTCATTGTCGATGGTGGCGATCAGATGAATGTGCTGGCC
AACGGGCAGGCCAAGGACATGCTGCTTGGAGGGCAATCCAAACCGGAATC
TCCTAGTGTCATGGCTCAGATTCTCC

BS15279.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:17:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG5946-PB 951 CG5946-RB 192..945 776..23 3745 99.8 Minus
CG5946-PA 942 CG5946-RA 183..936 776..23 3745 99.8 Minus
CG5946-PC 942 CG5946-RC 183..769 776..190 2910 99.8 Minus
CG5946-PD 951 CG5946-RD 192..778 776..190 2910 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:34:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG5946-RF 1460 CG5946-RF 540..1293 776..23 3755 99.9 Minus
CG5946-RA 1224 CG5946-RA 304..1057 776..23 3755 99.9 Minus
CG5946-RB 1686 CG5946-RB 478..1231 776..23 3755 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:34:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11818254..11818740 290..776 2420 99.8 Plus
3L 28110227 3L 11817150..11817318 23..191 845 100 Plus
3L 28110227 3L 11818086..11818189 188..291 520 100 Plus
Blast to na_te.dros performed on 2015-02-10 16:34:16 has no hits.

BS15279.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:22:18 Download gff for BS15279.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5946-PA 183..942 17..776 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:57:29 Download gff for BS15279.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5946-PA 183..942 17..776 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:30:08 Download gff for BS15279.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5946-RB 478..1237 17..776 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:23:36 Download gff for BS15279.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5946-RB 478..1237 17..776 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:23:36 Download gff for BS15279.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 11817144..11817316 17..189 98 <- Plus
3L 11818088..11818187 190..289 100 <- Plus
3L 11818254..11818740 290..776 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:30:08 Download gff for BS15279.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11810244..11810416 17..189 98 <- Plus
arm_3L 11811188..11811287 190..289 100 <- Plus
arm_3L 11811354..11811840 290..776 99   Plus

BS15279.5prime Sequence

844 bp (780 high quality bases) assembled on 2006-10-24

> BS15279.5prime
GAAGTTATCAGTCGACATGACGGAATTCGATTTTGTGCCACTCGCCGTGG
GTGTGGTAGCCGTACTCGCCGGCGCCCTGATCGTCCACTATCTGCTGAAT
AAGAAGTCCACGAAACCACGCCGGGAACCCAATCGCACCGCTCGGCTGCG
CACACTTGTGGATCCCAATGACAAGTACCTGCTGCCTCTCATCGAAAAGG
AGAATCTGAGCCATGACACTAGGAGATTCCGGTTTGGATTGCCCTCCAAG
CAGCATGTCCTTGGCCTGCCCGTTGGCCAGCACATTCATCTGATCGCCAC
CATCGACAATGAGCTAATAATTCGGCCATACACTCCTATATCGTCTGATG
AGGATGTGGGCTACGTGGACCTAGTCGTCAAGGTGTACTTCAAGGATTCG
CATCCCAAGTTCCCGGCCGGCGGCAAAATGACACAACACCTGGAGCAGCT
CGAGTTGGGGGACAAGATCTCGTTCCGTGGTCCCTCGGGTAGGCTACAAT
ATCTCGGCAATGGCACCTTCTCCATCAAAAAGTTGCGCAAGGATCCTCCA
AAGCACGTGACCGCCAAGCGGGTCAACATGATTGCCGGCGGCACTGGCAT
TACTCCAATGCTTCAATTGGCCAGGGAAGTTCTCAAGCGCAGCGATAAGG
ATAAGACTGAACTGGCGTTGCTGTTCGCCAATCAGAGCGAANAGGACATT
CTACTGCGTGCAGAGTTGGACGAACTGGCCCAGAAGCATCCTGACCAGTT
CAAGATCTGGTACACAGTCGACAAGGCAAACGAAGGTTGGCAGTATAGCG
TTGGCTTCATCAATGAGGAAATGATCGCCGCCCACCTGCTTCCG

BS15279.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:17:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG5946-PA 942 CG5946-RA 1..828 17..844 4096 99.7 Plus
CG5946-PB 951 CG5946-RB 23..837 30..844 4031 99.7 Plus
CG5946-PC 942 CG5946-RC 1..769 17..785 3801 99.7 Plus
CG5946-PD 951 CG5946-RD 23..778 30..785 3736 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:19:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG5946-RA 1224 CG5946-RA 122..949 17..844 4114 99.8 Plus
CG5946-RF 1460 CG5946-RF 371..1185 30..844 4049 99.8 Plus
CG5946-RB 1686 CG5946-RB 309..1123 30..844 4049 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:19:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11818254..11818907 685..32 3255 99.8 Minus
3L 28110227 3L 11818086..11818189 787..684 509 99 Minus
3L 28110227 3L 11817258..11817318 844..784 305 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:19:20 has no hits.

BS15279.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:22:20 Download gff for BS15279.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5946-PA 1..828 17..844 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:57:31 Download gff for BS15279.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5946-PA 1..828 17..844 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:20:57 Download gff for BS15279.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5946-RA 122..949 17..844 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:05:46 Download gff for BS15279.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5946-RA 122..949 17..844 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:05:46 Download gff for BS15279.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 11817258..11817316 786..844 100 <- Minus
3L 11818088..11818187 686..785 99 <- Minus
3L 11818254..11818907 32..685 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:20:57 Download gff for BS15279.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11810358..11810416 786..844 100 <- Minus
arm_3L 11811188..11811287 686..785 99 <- Minus
arm_3L 11811354..11812007 32..685 99 <- Minus

BS15279.pep Sequence

Translation from 16 to 957

> BS15279.pep
MTEFDFVPLAVGVVAVLAGALIVHYLLNKKSTKPRREPNRTARLRTLVDP
NDKYLLPLIEKENLSHDTRRFRFGLPSKQHVLGLPVGQHIHLIATIDNEL
IIRPYTPISSDEDVGYVDLVVKVYFKDSHPKFPAGGKMTQHLEQLELGDK
ISFRGPSGRLQYLGNGTFSIKKLRKDPPKHVTAKRVNMIAGGTGITPMLQ
LAREVLKRSDKDKTELALLFANQSEKDILLRAELDELAQKHPDQFKIWYT
VDKANEGWQYSVGFINEEMIAAHLLPAKDDTIVLLCGPPPMINFACNPAL
DKLGYHPDTRFAY*

BS15279.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:12:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG5946-PA 313 CG5946-PA 1..313 1..313 1638 100 Plus
CG5946-PF 316 CG5946-PF 4..316 1..313 1616 98.7 Plus
CG5946-PB 316 CG5946-PB 4..316 1..313 1616 98.7 Plus
CG5946-PC 313 CG5946-PC 1..313 1..313 1503 90.4 Plus
CG5946-PD 316 CG5946-PD 4..316 1..313 1481 89.1 Plus