Clone Sequence Records
BS15285.complete Sequence
1937 bp assembled on 2009-12-07
GenBank Submission: KX801091
> BS15285.complete
GAAGTTATCAGTCGACATGGCAGCCCGCTGTAAAACTAGCCTCCGCAGCC
TGCAAATGCCGTATGTGCGGGCCACAAATAAATTCGACTTTAGCTGTTTG
TTTCTGGCCATCTGGCTAGATGCTCTGGCCACCGTGTGTGCCTGCGCTGC
CCTGGCGAGGACCCTCAGTGCCTGCTTGGACGCCATGACCGGAGGTCTGG
CCAGGATTCTCATATTGGGCCGCAATGCACCCGCGAATGAGCCGTGGCCG
GATGTTCTTGGCGTGTCGGTTGTCTTCCTCGTCACTGGGATGTTCATGCT
GGGCCTGGAGCACTCGAGGGCCTTCAGCCTCATCCTGACTCTTGGCATGT
TTGGCTTGAACGCCATTTTAAGCGCCGTCGGCTGGTGGCGGGGCGACATG
TTGGCCTGGTCTGCGGATAGCTACTTCCAGCCCGATGGCATTAGCAGTGT
CTTCCTGGGTACTGCCCTGCTCACCTACTCCTTCCCCGGCGATTGGCCCC
AACAACTTCGAGGTGGACGATTCACGGCGACTCTAATTACGGGATTGGTC
AGTACTTCGCTGCTGCTGACGGCCATTTGTCTGTCGACGGTGGTGCATTA
TAGATCTCAGGAGGACTATGTAGCCGTGCCCTTGTTCAACATTCTGGATG
AAAACGGCTTCCATAAGTTGGTTCCTGCCTCGGCTTGCATGTTGCTTTTG
ACGAGTTCGGCGGCATTTCTGGAGCTCTTTCCGGAACTATATGGTATTGT
TGTGCGACTGGCCACCTCGGAGTGGAGAATACTGTCCAAGCAGATCAGTT
ATGAGAGCTCGGAGAGTGGTAACCCCGTGCTGGCTGTGTTCATCGCCGGC
AGCATGTGTGCCATGTTGGCCTTCGCCTGTCCACTACAGCATCTCAGTTA
CACATTAGCCGCTGGCCACATGGGTGGGGTATTCCTGAGGGCCCTTTACC
TCCTATACATCCCTTACAGACCCAAATATATGGCGCCCAGCAGCGAGTCT
TCACTGTCGTACAGTCGCCTATCCACAGCACCGTTTGCCAAGAGCAGCAG
CTACAGCAGTGCCGCAACTTCCAGTTCGAGTCGCTTAAAGAGAAGTCTCT
GGAAGATCGGTCTGCCCAAGCACAGTAACTTAAAAAAGCCGAAGACCAAG
CCCAGGAACAAACAAGAGCTGGAAAAGGAGTGGCTGCTCCTGGGTGAACC
CACCTCGCCCTGTCCTCAACGAGAGGGCAGGGATGTGGAGTCCACCATTC
TTTCCGATGGCGAGCCACCGCCATCTGACTTTGAGTACCCAGATAAATTT
GACAAAAGTGACTCGGACACCTCCACCGACATTGATGCCATTGTGGATGA
GTATCGTGAAAAGATTAAGGTAACCACCGCCGGACCTTTGGAGCGCAGTG
TGCGAGTGCCTACGGTGAGTTCCTGGCGCGTGACCATTTTCGCCATTGTG
GTGATTGGATTGGGCATTGCCCTATGCATTGCCGGGCTCATGATGCACTG
GGCTCCGGCAGCGTTGACCGGAGGGATTGGGGTTCTTATCGTGACCATTA
TGATGGGTTTTATACCCAAATACACGGGCAGTGTGATCAACGTGAGTCCC
GTGATCTGTGGAATGTCGCTGCTGATGGGCGTGATCCTATTCAGTGGCTG
TGCTATACATTCCTGGCCGGGATTGCTTATCTGGCTGATGGCTGGACTCA
TTCTGGTGATCAGATGCGATAAATACTGTTGCAATTGTTTTGAGCACACC
ACCATAATGAATGCCCAGCTGATACCTAGTGTCTCGGGAAAGAGCAACAT
GGGGTCAGCGTCGGGATCGGCATCAAATTTAGCGGGTCCCTCCACCAGCA
TCCGGATACCCAGACCGCCCAAGGGAATGGGCGTAGTCGGCTTGCCACAG
CGCATCAACGAGCACAGATGAAAGCTTTCTAGACCAT
BS15285.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:59:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tadr-RD | 2160 | CG9264-PD | 154..2058 | 17..1921 | 9525 | 100 | Plus |
| tadr-RC | 2058 | CG9264-PC | 154..2058 | 17..1921 | 9525 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:59:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tadr-RD | 2656 | CG9264-RD | 451..2355 | 17..1921 | 9525 | 100 | Plus |
| tadr-RC | 2656 | CG9264-RC | 451..2355 | 17..1921 | 9525 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:59:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21079288..21079956 | 602..1270 | 3345 | 100 | Plus |
| 2L | 23513712 | 2L | 21080199..21080752 | 1368..1921 | 2770 | 100 | Plus |
| 2L | 23513712 | 2L | 21077560..21077758 | 21..219 | 995 | 100 | Plus |
| 2L | 23513712 | 2L | 21078967..21079121 | 449..603 | 775 | 100 | Plus |
| 2L | 23513712 | 2L | 21078269..21078410 | 309..450 | 710 | 100 | Plus |
| 2L | 23513712 | 2L | 21080036..21080139 | 1270..1373 | 520 | 100 | Plus |
| 2L | 23513712 | 2L | 21078093..21078185 | 218..310 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:59:02 has no hits.
BS15285.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:43:58 Download gff for
BS15285.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9264-RB | 448..2351 | 17..1920 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:02:52 Download gff for
BS15285.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tadr-RC | 451..2354 | 17..1920 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:59:58 Download gff for
BS15285.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9264-RB | 448..2351 | 17..1920 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:01:18 Download gff for
BS15285.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tadr-RC | 451..2354 | 17..1920 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:01:18 Download gff for
BS15285.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21077556..21077757 | 17..218 | 98 | -> | Plus |
| 2L | 21078094..21078185 | 219..310 | 100 | -> | Plus |
| 2L | 21078271..21078408 | 311..448 | 100 | -> | Plus |
| 2L | 21078967..21079121 | 449..603 | 100 | -> | Plus |
| 2L | 21079290..21079956 | 604..1270 | 100 | -> | Plus |
| 2L | 21080037..21080135 | 1271..1369 | 100 | -> | Plus |
| 2L | 21080201..21080751 | 1370..1920 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:02:52 Download gff for
BS15285.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21078271..21078408 | 311..448 | 100 | -> | Plus |
| arm_2L | 21078967..21079121 | 449..603 | 100 | -> | Plus |
| arm_2L | 21077556..21077757 | 17..218 | 98 | -> | Plus |
| arm_2L | 21078094..21078185 | 219..310 | 100 | -> | Plus |
| arm_2L | 21079290..21079956 | 604..1270 | 100 | -> | Plus |
| arm_2L | 21080037..21080135 | 1271..1369 | 100 | -> | Plus |
| arm_2L | 21080201..21080751 | 1370..1920 | 100 | | Plus |
BS15285.3prime Sequence
741 bp (668 high quality bases) assembled on 2006-10-24
> BS15285.3prime
ATGGTCTAGAAAGCTTTCATCTGTGCTCGTTGATGCGCTGTGGCAAGCCG
ACTACGCCCATTCCCTTGGGCGGTCTGGGTATCCGGATGCTGGTGGAGGG
ACCCGCTAAATTTGATGCCGATCCCGACGCTGACCCCATGTTGCTCTTTC
CCGAGACACTAGGTATCAGCTGGGCATTCATTATGGTGGTGTGCTCAAAA
CAATTGCAACAGTATTTATCGCATCTGATCACCAGAATGAGTCCAGCCAT
CAGCCAGATAAGCAATCCCGGCCAGGAATGTATAGCACAGCCACTGAATA
GGATCACGCCCATCAGCAGCGACATTCCACAGATCACGGGACTCACGTTG
ATCACACTGCCCGTGTATTTGGGTATAAAACCCATCATAATGGTCACGAT
AAGAACCCCAATCCCTCCGGTCAACGCTGCCGGAGCCCAGTGCATCATGA
GCCCGGCAATGCATAGGGCAATGCCCAATCCAATCACCACAATGGCGAAA
ATGGTCACGCGCCAGGAACTCACCGTAGGCACTCGCACACTGCGCTCCAA
AGGTCCGGCGGTGGTTACCTTAATCTTTTCACGATACTCATCCACAATGG
CATCAATGTCGGTGGAGGTGTCCGAGTCACTTTTGTCAAATTTATCTGGG
TACTCAAAGTCAGATGGCGGTGGCTCGCCATCGGAAAGAATGGTGGACTC
CACATCCCTGCCCTCTCGTTGAAGACAGGGCGAGGTGGGTT
BS15285.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:17:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9264-PB | 1905 | CG9264-RB | 1181..1905 | 741..17 | 3600 | 99.8 | Minus |
| CG9264-PA | 1995 | CG9264-RA | 1334..1842 | 741..233 | 2520 | 99.8 | Minus |
| CG9264-PA | 1995 | CG9264-RA | 1842..1995 | 170..17 | 770 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:24:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tadr-RD | 2656 | CG9264-RD | 1631..2355 | 741..17 | 3610 | 99.9 | Minus |
| tadr-RC | 2656 | CG9264-RC | 1631..2355 | 741..17 | 3610 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:24:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21080199..21080752 | 570..17 | 2770 | 100 | Minus |
| 2L | 23513712 | 2L | 21080036..21080139 | 668..565 | 520 | 100 | Minus |
| 2L | 23513712 | 2L | 21079883..21079956 | 741..668 | 355 | 98.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:24:19 has no hits.
BS15285.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:22:29 Download gff for
BS15285.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9264-PB | 1181..1905 | 17..741 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:57:45 Download gff for
BS15285.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9264-PB | 1181..1905 | 17..741 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:57:00 Download gff for
BS15285.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tadr-RC | 1631..2358 | 14..741 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:00:13 Download gff for
BS15285.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tadr-RC | 1631..2358 | 14..741 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:00:13 Download gff for
BS15285.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21079883..21079956 | 668..741 | 98 | -> | Minus |
| 2L | 21080037..21080135 | 569..667 | 100 | -> | Minus |
| 2L | 21080201..21080755 | 14..568 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:57:00 Download gff for
BS15285.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21079883..21079956 | 668..741 | 98 | -> | Minus |
| arm_2L | 21080037..21080135 | 569..667 | 100 | -> | Minus |
| arm_2L | 21080201..21080755 | 14..568 | 99 | | Minus |
BS15285.5prime Sequence
841 bp (769 high quality bases) assembled on 2006-10-24
> BS15285.5prime
GAAGTTATCAGTCGACATGGCAGCCCGCTGTAAAACTAGCCTCCGCAGCC
TGCAAATGCCGTATGTGCGGGCCACAAATAAATTCGACTTTAGCTGTTTG
TTTCTGGCCATCTGGCTAGATGCTCTGGCCACCGTGTGTGCCTGCGCTGC
CCTGGCGAGGACCCTCAGTGCCTGCTTGGACGCCATGACCGGAGGTCTGG
CCAGGATTCTCATATTGGGCCGCAATGCACCCGCGAATGAGCCGTGGCCG
GATGTTCTTGGCGTGTCGGTTGTCTTCCTCGTCACTGGGATGTTCATGCT
GGGCCTGGAGCACTCGAGGGCCTTCAGCCTCATCCTGACTCTTGGCATGT
TTGGCTTGAACGCCATTTTAAGCGCCGTCGGCTGGTGGCGGGGCGACATG
TTGGCCTGGTCTGCGGATAGCTACTTCCAGCCCGATGGCATTAGCAGTGT
CTTCCTGGGTACTGCCCTGCTCACCTACTCCTTCCCCGGCGATTGGCCCC
AACAACTTCGAGGTGGACGATTCACGGCGACTCTAATTACGGGATTGGTC
AGTACTTCGCTGCTGCTGACGGCCATTTGTCTGTCGACGGTGGTGCATTA
TAGATCTCAGGAGGACTATGTAGCCGTGCCCTTGTTCAACATTCTGGATG
AAAACGGCTTCCATAAGTTGGTTCCTGCCTCGGCTTGCATGTTGCTTTTG
ACGAGTTCGGCGGCATTTCTGGAGCTCTTTCCGGAACTATATGGTATTGT
TGTGCGACTGGCCACCTCGGAGTGGAGAATACTGTCCAAGCAGATCAGTT
ATGAGAGCTCGGAGAGTGGAACCCCGTGCTGGCTGTGTTCA
BS15285.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:17:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9264-PB | 1905 | CG9264-RB | 1..803 | 17..819 | 4015 | 100 | Plus |
| CG9264-PA | 1995 | CG9264-RA | 154..956 | 17..819 | 4015 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:55:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tadr-RD | 2656 | CG9264-RD | 451..1276 | 17..841 | 4105 | 99.9 | Plus |
| tadr-RC | 2656 | CG9264-RC | 451..1276 | 17..841 | 4105 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:55:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21079288..21079528 | 602..841 | 1155 | 99.6 | Plus |
| 2L | 23513712 | 2L | 21077560..21077758 | 21..219 | 995 | 100 | Plus |
| 2L | 23513712 | 2L | 21078967..21079121 | 449..603 | 775 | 100 | Plus |
| 2L | 23513712 | 2L | 21078269..21078410 | 309..450 | 710 | 100 | Plus |
| 2L | 23513712 | 2L | 21078093..21078185 | 218..310 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:55:36 has no hits.
BS15285.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:22:30 Download gff for
BS15285.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9264-PB | 1..825 | 17..840 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:57:46 Download gff for
BS15285.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9264-PA | 154..978 | 17..840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 06:30:19 Download gff for
BS15285.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tadr-RC | 451..1275 | 17..840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:51:03 Download gff for
BS15285.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tadr-RC | 451..1275 | 17..840 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:51:03 Download gff for
BS15285.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21077560..21077757 | 21..218 | 100 | -> | Plus |
| 2L | 21078094..21078185 | 219..310 | 100 | -> | Plus |
| 2L | 21078271..21078408 | 311..448 | 100 | -> | Plus |
| 2L | 21078967..21079121 | 449..603 | 100 | -> | Plus |
| 2L | 21079290..21079527 | 604..840 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 06:30:19 Download gff for
BS15285.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21077560..21077757 | 21..218 | 100 | -> | Plus |
| arm_2L | 21078094..21078185 | 219..310 | 100 | -> | Plus |
| arm_2L | 21078271..21078408 | 311..448 | 100 | -> | Plus |
| arm_2L | 21078967..21079121 | 449..603 | 100 | -> | Plus |
| arm_2L | 21079290..21079527 | 604..840 | 99 | | Plus |
BS15285.pep Sequence
Translation from 16 to 1920
> BS15285.pep
MAARCKTSLRSLQMPYVRATNKFDFSCLFLAIWLDALATVCACAALARTL
SACLDAMTGGLARILILGRNAPANEPWPDVLGVSVVFLVTGMFMLGLEHS
RAFSLILTLGMFGLNAILSAVGWWRGDMLAWSADSYFQPDGISSVFLGTA
LLTYSFPGDWPQQLRGGRFTATLITGLVSTSLLLTAICLSTVVHYRSQED
YVAVPLFNILDENGFHKLVPASACMLLLTSSAAFLELFPELYGIVVRLAT
SEWRILSKQISYESSESGNPVLAVFIAGSMCAMLAFACPLQHLSYTLAAG
HMGGVFLRALYLLYIPYRPKYMAPSSESSLSYSRLSTAPFAKSSSYSSAA
TSSSSRLKRSLWKIGLPKHSNLKKPKTKPRNKQELEKEWLLLGEPTSPCP
QREGRDVESTILSDGEPPPSDFEYPDKFDKSDSDTSTDIDAIVDEYREKI
KVTTAGPLERSVRVPTVSSWRVTIFAIVVIGLGIALCIAGLMMHWAPAAL
TGGIGVLIVTIMMGFIPKYTGSVINVSPVICGMSLLMGVILFSGCAIHSW
PGLLIWLMAGLILVIRCDKYCCNCFEHTTIMNAQLIPSVSGKSNMGSASG
SASNLAGPSTSIRIPRPPKGMGVVGLPQRINEHR*
BS15285.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:05:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tadr-PD | 719 | CG9264-PD | 52..685 | 1..634 | 3282 | 100 | Plus |
| tadr-PC | 685 | CG9264-PC | 52..685 | 1..634 | 3282 | 100 | Plus |
