Clone Sequence Records
BS15286.complete Sequence
1397 bp assembled on 2009-12-07
GenBank Submission: KX806476
> BS15286.complete
GAAGTTATCAGTCGACATGCCAGCACCAGAGGACCTAAACTCCTCCGACC
AAGAGGAATATTTCTGCACCGAAAAGGACGCCGCTGCCGATGGAAGTCAT
CTGTTGCATGCCCCTGGAACGGTGGATGGAGCAACTGCATCCACCTCGGC
TCCGGGACTGGGCGGCAACCACATGACCAGCAGCTGGTGGTGGCGCACTC
GCAGCTTGAATGCACCCTCGCCTGTCCAGCAGTTCGGACCATGTGGTCGC
ATCATGAAAAACTCCGCCATGGTGATGCAGATCCAGGATCCGGCTAGTCA
ACGTCTCACCTGGTACAAGCCACCACTCACCGTGCTCGTGATCAAGAAGG
TCAGCGATGCCTCGGTGCTGGCACCGTTCGTCTACCTGGTGGACTGGCTG
CTGCAGGAGAAGAACATGGTCGTTTGGGTGGAGTCGGCCGTGCTGGAGGA
TGTCCAGCTCAACGAAAATGTGCGATTCAAGGCCATTCGGGATAAGCTAG
TGACTTTCAAAGATGGCCGAGATGATCTGACCGATCGCATAGACTTTATA
GTTTGCCTGGGTGGCGATGGCACCCTGCTGTATGCTTCGCTGCTCTTCCA
GCAATCTGTGCCCCCCGTCATGGCCTTCCATTTGGGCTCCCTCGGCTTTC
TCACACCCTTCCGTTTCGATAACTTTGAGGAGCAGCTGACCAGCGTCCTG
GAGGGTCACGCTGCCCTAACGCTTCGCAGTCGTTTGCGCTGTGTTATGCA
TCGCAGGAGCGATAGGAAACACGAGGCTAAGACTCTGGAGGCAGATCTAG
ATGGTGAGGCGCGACCTGCAGCCAACAGCATACTGGTGCTCAACGAAGTG
GTCATTGATCGTGGTCCATCGCCGTATCTGAGCAATATTGATCTGTTTCT
GGACGGAAAGTATATCACGTCGGTGCAGGGCGACGGTCTGATCGTATCGA
CGCCCACGGGAAGCACGGCATATGCGGCGGCGGCCGGTGCGTCCATGATC
CATCCCTCCGTGCCGGCGATTATGGTGACTCCCATCTGCCCGCATTCGCT
TAGCTTCCGACCCATTGTGGTGCCAGCAGGAGTGGAGCTGAAGATATCAG
TATCCCCCGAGAGCCGCAACACATCGTGGGTTAGCTTCGATGGACGCAAC
AGGCAGGAGCTCTTCCATGGCGACAGCCTTCGCGTGACCACCTCCATTTA
TCCCGTGCCATGCATCTGCGCCCAGGATCAGATATCCGACTGGTTCGCCT
CCCTAGCCGACGGACTGCACTGGAATGTGCGCAAGCGACAGAAGTGCCTG
GACGAGCTGTCGGATCTGACGGCATCCGGATCGGAGGATACGCTGGACGA
GATCGAGAACATGAAATTGTACGATGTGTAGAAGCTTTCTAGACCAT
BS15286.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:49:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33156-RA | 1365 | CG33156-PA | 1..1365 | 17..1381 | 6825 | 100 | Plus |
CG33156-RF | 1353 | CG33156-PF | 164..1353 | 192..1381 | 5950 | 100 | Plus |
CG33156-RB | 1362 | CG33156-PB | 173..1362 | 192..1381 | 5950 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:49:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33156-RA | 1874 | CG33156-RA | 147..1511 | 17..1381 | 6825 | 100 | Plus |
CG33156-RF | 1795 | CG33156-RF | 243..1432 | 192..1381 | 5950 | 100 | Plus |
CG33156-RB | 1824 | CG33156-RB | 272..1461 | 192..1381 | 5950 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:49:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13548954..13549536 | 1093..511 | 2915 | 100 | Minus |
2R | 25286936 | 2R | 13549599..13549917 | 510..192 | 1595 | 100 | Minus |
2R | 25286936 | 2R | 13548607..13548896 | 1381..1092 | 1450 | 100 | Minus |
2R | 25286936 | 2R | 13552107..13552283 | 193..17 | 885 | 100 | Minus |
2R | 25286936 | 2R | 13538198..13538468 | 1093..823 | 770 | 85.6 | Minus |
2R | 25286936 | 2R | 13538625..13538855 | 741..511 | 585 | 83.5 | Minus |
2R | 25286936 | 2R | 13539104..13539350 | 441..192 | 585 | 83.2 | Minus |
2R | 25286936 | 2R | 13537799..13538051 | 1344..1092 | 545 | 81 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:49:20 has no hits.
BS15286.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:41:47 Download gff for
BS15286.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33156-RA | 124..1488 | 17..1381 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:58:47 Download gff for
BS15286.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33156-RA | 147..1511 | 17..1381 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:13:01 Download gff for
BS15286.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33156-RA | 124..1488 | 17..1381 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:57:41 Download gff for
BS15286.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33156-RA | 147..1511 | 17..1381 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:57:41 Download gff for
BS15286.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13548607..13548894 | 1094..1381 | 100 | <- | Minus |
2R | 13548954..13549536 | 511..1093 | 100 | <- | Minus |
2R | 13549599..13549916 | 193..510 | 100 | <- | Minus |
2R | 13552108..13552283 | 17..192 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:58:47 Download gff for
BS15286.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9436112..9436399 | 1094..1381 | 100 | <- | Minus |
arm_2R | 9436459..9437041 | 511..1093 | 100 | <- | Minus |
arm_2R | 9437104..9437421 | 193..510 | 100 | <- | Minus |
arm_2R | 9439613..9439788 | 17..192 | 100 | | Minus |
BS15286.3prime Sequence
759 bp (733 high quality bases) assembled on 2006-10-24
> BS15286.3prime
ATGGTCTAGAAAGCTTCCACCTATCGTGCAATTTCATGTTCTCGATCTCG
TCCAGCGTATCCTCCGATCCGGATGCCGTCAGATCCGACAGCTCGCCCAG
GCACTTCTGTCGCTTGCGCACATTCCAGTGCAGTCCGTCGGCTAGGGAGG
CGAACCAGTCGGATATCTGATCCTGGGCGCAGATGCATGGCACGGGATAA
ATGGAGGTGGTCACGCGAAGGCTGTCGCCATGGAAGAGCTCCTGCCTGTT
GCGTCCATCGAAGCTAACCCACGATGTGTTGCGGCTCTCGGGGGATACTG
ATATCTTCAGCTCCACTCCTGCTGGCACCACAATGGGTCGGAAGCTAAGC
GAATGCGGGCAGATGGGAGTCACCATAATCGCCGGCACGGAGGGATGGAT
CATGGACGCACCGGCCGCCGCCGCATATGCCGTGCTTCCCGTGGGCGTCG
ATACGATCAGACCGTCGCCCTGCACCGACGTGATATACTTTCCGTCCAGA
AACAGATCAATATTGCTCAGATACGGCGATGGACCACGATCAATGACCAC
TTCGTTGAGCACCAGTATGCTGTTGGCTGCAGGTCGCGCCTCACCATCTA
GATCTGCCTCCAGAGTCTTAGCCTCGTGTTTCCTATCGCTCCTGCGATGC
ATAACACAGCGCAAACGACTGCGAAGCGTTAGGGCAGCGTGACCCTCCAG
GACGCTGGGCAGCTGCTCCTCAAAGTTATCGAAACGGAAGGGTGTGAAAA
AGCCCAGGG
BS15286.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:17:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33156-PC | 1128 | CG33156-RC | 391..1122 | 754..23 | 3560 | 99.4 | Minus |
CG33156-PA | 1365 | CG33156-RA | 628..1359 | 754..23 | 3560 | 99.4 | Minus |
CG33156-PE | 1473 | CG33156-RE | 736..1467 | 754..23 | 3560 | 99.4 | Minus |
CG33156-PB | 1362 | CG33156-RB | 625..1356 | 754..23 | 3560 | 99.4 | Minus |
CG6145-PB | 1263 | CG6145-RB | 799..981 | 481..299 | 465 | 90.1 | Minus |
CG6145-PA | 1563 | CG6145-RA | 1099..1281 | 481..299 | 465 | 90.1 | Minus |
CG6145-PC | 1647 | CG6145-RC | 1183..1365 | 481..299 | 465 | 90.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:30:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33156-RF | 1795 | CG33156-RF | 690..1426 | 759..23 | 3610 | 99.3 | Minus |
CG33156-RB | 1824 | CG33156-RB | 719..1455 | 759..23 | 3610 | 99.3 | Minus |
CG33156-RE | 2330 | CG33156-RE | 1225..1961 | 759..23 | 3610 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:30:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13548954..13549408 | 305..759 | 2230 | 99.3 | Plus |
2R | 25286936 | 2R | 13548613..13548896 | 23..306 | 1390 | 99.3 | Plus |
2R | 25286936 | 2R | 13538198..13538468 | 305..575 | 770 | 85.6 | Plus |
2R | 25286936 | 2R | 13537799..13538051 | 54..306 | 530 | 80.6 | Plus |
2R | 25286936 | 2R | 13538625..13538727 | 657..759 | 200 | 79.6 | Plus |
Blast to na_te.dros performed on 2015-02-11 03:30:55 has no hits.
BS15286.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:22:31 Download gff for
BS15286.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33156-PB | 620..1362 | 17..759 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:57:47 Download gff for
BS15286.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33156-PA | 623..1365 | 17..759 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:05:48 Download gff for
BS15286.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33156-RE | 1225..1964 | 18..759 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:27:49 Download gff for
BS15286.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33156-RE | 1225..1964 | 18..759 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:27:49 Download gff for
BS15286.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13548610..13548894 | 18..304 | 98 | <- | Plus |
2R | 13548954..13549408 | 305..759 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:05:48 Download gff for
BS15286.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9436115..9436399 | 18..304 | 98 | <- | Plus |
arm_2R | 9436459..9436913 | 305..759 | 99 | | Plus |
BS15286.5prime Sequence
800 bp (698 high quality bases) assembled on 2006-10-24
> BS15286.5prime
GAAGTTATCAGTCGACATGCCAGCACCAGAGGACCTAAACTCCTCCGACC
AAGAGGAATATTTCTGCACCGAAAAGGACGCCGCTGCCGATGGAAGTCAT
CTGTTGCATGCCCCTGGAACGGTGGATGGAGCAACTGCATCCACCTCGGC
TCCGGGACTGGGCGGCAACCACATGACCAGCAGCTGGTGGTGGCGCACTC
GCAGCTTGAATGCACCCTCGCCTGTCCAGCAGTTCGGACCATGTGGTCGC
ATCATGAAAAACTCCGCCATGGTGATGCAGATCCAGGATCCGGCTAGTCA
ACGTCTCACCTGGTACAAGCCACCACTCACCGTGCTCGTGATCAAGAAGG
TCAGCGATGCCTCGGTGCTGGCACCGTTCGTCTACCTGGTGGACTGGCTG
CTGCAGGAGAAGAACATGGTCGTTTGGGTGGAGTCGGCCGTGCTGGAGGA
TGTCCAGCTCAACGAAGATGTGCGATTCAAGGCCATTCGGGATAAGCTAG
TGACTTTCAAAGATGGCCGAGATGATCTGACCGATCGCATAGACTTTATA
GTTTGCCTGGGTGGCGATGGCACCCTGCTGTATGCTTCGCTGCTCTTCCA
GCAATCTGTGCCCCCCGTCATGGCCTTCCATTTGGGCTCCCTCGGCTTTC
TCACACCCTTCCGTTTCGATAACTTTGAGGAGCAGCTGACCAGCGTCCTG
GAGGGTCACGCTGCCCTAACGCTTCGCAGTCGTTTGCGCTGTGTTATGCA
TCGCAGGAGCGATAGGAAACACGAAGCTAAGACTCTGGAGGGAGATCTAG
BS15286.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:17:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33156-PA | 1365 | CG33156-RA | 1..784 | 17..800 | 3845 | 99.6 | Plus |
CG33156-PB | 1362 | CG33156-RB | 173..781 | 192..800 | 2970 | 99.5 | Plus |
CG33156-PE | 1473 | CG33156-RE | 285..892 | 193..800 | 2965 | 99.5 | Plus |
CG33156-PC | 1128 | CG33156-RC | 1..547 | 254..800 | 2660 | 99.4 | Plus |
CG6145-PA | 1563 | CG6145-RA | 272..392 | 225..345 | 330 | 90.9 | Plus |
CG6145-PC | 1647 | CG6145-RC | 356..476 | 225..345 | 330 | 90.9 | Plus |
CG6145-PB | 1263 | CG6145-RB | 1..92 | 254..345 | 260 | 91.3 | Plus |
CG6145-PA | 1563 | CG6145-RA | 601..689 | 494..582 | 195 | 88.7 | Plus |
CG6145-PC | 1647 | CG6145-RC | 685..773 | 494..582 | 195 | 88.7 | Plus |
CG6145-PB | 1263 | CG6145-RB | 301..389 | 494..582 | 195 | 88.7 | Plus |
CG6145-PA | 1563 | CG6145-RA | 430..485 | 386..441 | 155 | 91 | Plus |
CG6145-PC | 1647 | CG6145-RC | 514..569 | 386..441 | 155 | 91 | Plus |
CG6145-PB | 1263 | CG6145-RB | 130..185 | 386..441 | 155 | 91 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:55:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33156-RA | 1874 | CG33156-RA | 147..930 | 17..800 | 3875 | 99.6 | Plus |
CG33156-RF | 1795 | CG33156-RF | 243..851 | 192..800 | 3000 | 99.5 | Plus |
CG33156-RB | 1824 | CG33156-RB | 272..880 | 192..800 | 3000 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:55:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13549599..13549917 | 510..192 | 1580 | 99.7 | Minus |
2R | 25286936 | 2R | 13549247..13549536 | 800..511 | 1420 | 99.3 | Minus |
2R | 25286936 | 2R | 13552107..13552283 | 193..17 | 885 | 100 | Minus |
2R | 25286936 | 2R | 13538625..13538855 | 741..511 | 585 | 83.5 | Minus |
2R | 25286936 | 2R | 13539104..13539350 | 441..192 | 585 | 83.2 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:55:46 has no hits.
BS15286.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:22:32 Download gff for
BS15286.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33156-PA | 1..784 | 17..800 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:57:49 Download gff for
BS15286.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33156-PA | 1..784 | 17..800 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 06:30:21 Download gff for
BS15286.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33156-RA | 137..930 | 6..800 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:51:28 Download gff for
BS15286.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33156-RA | 137..930 | 6..800 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:51:28 Download gff for
BS15286.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13549247..13549536 | 511..800 | 99 | <- | Minus |
2R | 13549599..13549916 | 193..510 | 99 | <- | Minus |
2R | 13552108..13552293 | 6..192 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 06:30:21 Download gff for
BS15286.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9439613..9439798 | 6..192 | 97 | | Minus |
arm_2R | 9436752..9437041 | 511..800 | 99 | <- | Minus |
arm_2R | 9437104..9437421 | 193..510 | 99 | <- | Minus |
BS15286.pep Sequence
Translation from 16 to 1380
> BS15286.pep
MPAPEDLNSSDQEEYFCTEKDAAADGSHLLHAPGTVDGATASTSAPGLGG
NHMTSSWWWRTRSLNAPSPVQQFGPCGRIMKNSAMVMQIQDPASQRLTWY
KPPLTVLVIKKVSDASVLAPFVYLVDWLLQEKNMVVWVESAVLEDVQLNE
NVRFKAIRDKLVTFKDGRDDLTDRIDFIVCLGGDGTLLYASLLFQQSVPP
VMAFHLGSLGFLTPFRFDNFEEQLTSVLEGHAALTLRSRLRCVMHRRSDR
KHEAKTLEADLDGEARPAANSILVLNEVVIDRGPSPYLSNIDLFLDGKYI
TSVQGDGLIVSTPTGSTAYAAAAGASMIHPSVPAIMVTPICPHSLSFRPI
VVPAGVELKISVSPESRNTSWVSFDGRNRQELFHGDSLRVTTSIYPVPCI
CAQDQISDWFASLADGLHWNVRKRQKCLDELSDLTASGSEDTLDEIENMK
LYDV*
BS15286.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:03:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33156-PA | 454 | CG33156-PA | 1..454 | 1..454 | 2371 | 100 | Plus |
CG33156-PE | 490 | CG33156-PE | 73..490 | 37..454 | 2067 | 96.2 | Plus |
CG33156-PF | 450 | CG33156-PF | 56..450 | 60..454 | 2041 | 100 | Plus |
CG33156-PB | 453 | CG33156-PB | 59..453 | 60..454 | 2041 | 100 | Plus |
CG33156-PC | 375 | CG33156-PC | 1..375 | 80..454 | 1933 | 100 | Plus |