Clone Sequence Records
BS15292.3prime Sequence
797 bp (701 high quality bases) assembled on 2006-10-24
> BS15292.3prime
ATGGTCTAGAAAGCTTCTCCCCTTGAGGGTTCGAGTTTCTGAGATTTTGT
GCGGCGGTGCTGGTGGAGGGCGTTGGCGAGCCAGGGGGCGTGCCCGTGGG
GAGGGAGCGTTCAAAGTCCTCCGCTAAATCATCGTCATCTCCCTCCTGTT
GCCAACTGTCCAATGCGGAGTCGACATCGAATTCCGGGAACTTCAGCGTT
TCCCCCGTCACATCCACCAGCCGAGATCGCAATCTCTGCGAGATCTCCTC
CAGCTCCGTGTATTTGCGCTTGATGGCCTGGCCCAACTGCAAGTGACCCA
GTTCCATGGACTTCTCGAACTGATCGATTACGGTATCTACACTGGGCGAT
ATGGGCTCCACGTGCGCCTCGATTCCCCCAGTCACACGTCCATTGAAGTC
TACTATGTTATGCCATCCGCTGGGAAAGCCTCCGCCCGCTTGTTTTTGGT
TAAGATTAAGTGCAGCGAATCCTATTATGGCATCTTCATGGGGAGACGGC
TCTGTGATGCCATTTGGGCTAACAACCGCCTTTTTCCAAAGCTTCAGAAT
GAAAAGCTTCTGGGGATTGCTGCGATAATCGCGACTCACGTCCACGCGGA
ACTTGCTAAGCCACTGGGGCTTCGTCGATTTGGGTACAATTGGTGTGGCG
TACACCAATCCTTCGTGCGACTTATAGGTCTGACTATTGCAACTGATGGC
CTGNAAGGTCACATAGGTGTTGGGAGGTTCGTTGGGCGGGAAGCGCTTGG
CTGCCGACTGACGTTTTACTTGCTTTCTCGATTTCCCATAGCCGGGA
BS15292.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:18:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32425-PC | 1443 | CG32425-RC | 663..1358 | 797..102 | 3411 | 99.5 | Minus |
| CG32425-PE | 2280 | CG32425-RE | 1500..2195 | 797..102 | 3411 | 99.5 | Minus |
| CG32425-PA | 2280 | CG32425-RA | 1500..2195 | 797..102 | 3411 | 99.5 | Minus |
| CG32425-PC | 1443 | CG32425-RC | 1368..1431 | 92..29 | 320 | 100 | Minus |
| CG32425-PE | 2280 | CG32425-RE | 2205..2268 | 92..29 | 320 | 100 | Minus |
| CG32425-PA | 2280 | CG32425-RA | 2205..2268 | 92..29 | 320 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:31:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32425-RA | 2813 | CG32425-RA | 1612..2380 | 797..29 | 3729 | 99 | Minus |
| CG32425-RE | 2827 | CG32425-RE | 1626..2394 | 797..29 | 3729 | 99 | Minus |
| CG32425-RC | 2077 | CG32425-RC | 876..1644 | 797..29 | 3729 | 99 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:31:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20513138..20513674 | 565..29 | 2610 | 99.1 | Minus |
| 3L | 28110227 | 3L | 20512844..20513075 | 797..566 | 1119 | 98.7 | Minus |
Blast to na_te.dros performed on 2015-02-11 03:31:04 has no hits.
BS15292.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:22:41 Download gff for
BS15292.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32425-PE | 1501..2275 | 21..796 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:57:59 Download gff for
BS15292.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32425-PA | 1501..2275 | 21..796 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:05:50 Download gff for
BS15292.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32425-RC | 877..1651 | 21..796 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:28:13 Download gff for
BS15292.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32425-RC | 877..1651 | 21..796 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:28:13 Download gff for
BS15292.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20512845..20513075 | 566..796 | 98 | -> | Minus |
| 3L | 20513138..20513681 | 21..565 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:05:50 Download gff for
BS15292.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20505945..20506175 | 566..796 | 98 | -> | Minus |
| arm_3L | 20506238..20506781 | 21..565 | 98 | | Minus |
BS15292.5prime Sequence
846 bp (792 high quality bases) assembled on 2006-10-24
> BS15292.5prime
GAAGTTATCAGTCGACATGGAGGCCATGAAGAAATTGGACGCGGACCTGG
TGGCCCTTTTCGCCACTGCTGCCTCCGCCGAACCTCTTAAGATTAGGAAA
CAGCAGGAGGTCCTGTGGCCGGGAGCCGAGCCGGAGCAAACCGCCCAGGA
ATCGGAGGATGATGAGCTGGTGATGACGCCGGAGCTCTTCCGCAGCTGCA
ACGCCTTGCAGCTGCACTTGGAGGCACTGACATTGCAGCCGGAGGGAACC
CAACGCATGGAACTGGTTCAGAACGAAGTGCGACCCATTTTCACCGTGGA
GTGCCAGCTGTCGGGGGACTTGATCCGTAAAGTGCCGCGCCAACCGATGT
TCCACATCATGCAGTTCGAGTCGGAGAAGTTCCAGAGCCTGACGCAGTGC
ACCCGTTTCGGGCAGACGGCTCAGCGTCAGGTCGATATGGAAGATAAGAG
CCTGCAGGATCCGGAACAGAGTGCTGGCCATGTAGACATCACGGTTTGGT
GGCGCGAACCCGGCACCTGTCTCAACGAAATGCTCGGCATGGGCCGCCTG
GAGCTCAGGGAGCTCTACAGGGCATCCCTGTTGGAGCAGTGCAAGTGCAT
TGCCATTCGGCGACGCGACGTCCACCTGGGTAGCGTGTACTTGAAGATCA
GTCTGCTTCAGAATTTGAATGGTAGCCCGGAGCAGCCGCAGCAACAGCAG
CAGCAGCCGGGCCAAAAGAACGAAAGTGGAAACAAGGCAGCAGTTAATTG
CAACTCGAAGGCCGTTTTAACGCCCCCTCAGCCGCCGGCGCCGCCACCTC
CTCCTCCCAAGCCAACAACAACAGCAAGGCCATCTTGGAGTGCATC
BS15292.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:18:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32425-PE | 2280 | CG32425-RE | 1..792 | 17..808 | 3960 | 100 | Plus |
| CG32425-PA | 2280 | CG32425-RA | 1..792 | 17..808 | 3960 | 100 | Plus |
| CG32425-PB | 741 | CG32425-RB | 1..727 | 17..743 | 3635 | 100 | Plus |
| CG32425-PE | 2280 | CG32425-RE | 791..831 | 806..846 | 205 | 100 | Plus |
| CG32425-PA | 2280 | CG32425-RA | 791..831 | 806..846 | 205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:29:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32425-RA | 2813 | CG32425-RA | 113..943 | 17..846 | 4130 | 99.9 | Plus |
| CG32425-RE | 2827 | CG32425-RE | 127..957 | 17..846 | 4130 | 99.9 | Plus |
| CG32425-RF | 2171 | CG32425-RF | 1166..1892 | 17..743 | 3635 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:29:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20510053..20510779 | 17..743 | 3635 | 100 | Plus |
| 3L | 28110227 | 3L | 20511934..20512040 | 741..846 | 485 | 99.1 | Plus |
Blast to na_te.dros performed 2015-02-13 15:29:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 5637..5662 | 801..826 | 112 | 92.3 | Plus |
BS15292.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:22:42 Download gff for
BS15292.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32425-PE | 1..831 | 17..846 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:58:01 Download gff for
BS15292.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32425-PA | 1..831 | 17..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:55:00 Download gff for
BS15292.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32425-RE | 122..957 | 10..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:58:45 Download gff for
BS15292.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32425-RE | 122..957 | 10..846 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:58:45 Download gff for
BS15292.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20510048..20510779 | 10..743 | 99 | -> | Plus |
| 3L | 20511937..20512040 | 744..846 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:55:00 Download gff for
BS15292.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20503148..20503879 | 10..743 | 99 | -> | Plus |
| arm_3L | 20505037..20505140 | 744..846 | 99 | | Plus |
BS15292.complete Sequence
2312 bp assembled on 2009-08-24
GenBank Submission: KX805852
> BS15292.complete
GAAGTTATCAGTCGACATGGAGGCCATGAAGAAATTGGACGCGGACCTGG
TGGCCCTTTTCGCCACTGCTGCCTCCGCCGAACCTCTTAAGATTAGGAAA
CAGCAGGAGGTCCTGTGGCCGGGAGCCGAGCCGGAGCAAACCGCCCAGGA
ATCGGAGGATGATGAGCTGGTGATGACGCCGGAGCTCTTCCGCAGCTGCA
ACGCCTTGCAGCTGCACTTGGAGGCACTGACATTGCAGCCGGAGGGAACC
CAACGCATGGAACTGGTTCAGAACGAAGTGCGACCCATTTTCACCGTGGA
GTGCCAGCTGTCGGGGGACTTGATCCGTAAAGTGCCGCGCCAACCGATGT
TCCACATCATGCAGTTCGAGTCGGAGAAGTTCCAGAGCCTGACGCAGTGC
ACCCGTTTCGGGCAGACGGCTCAGCGTCAGGTCGATATGGAAGATAAGAG
CCTGCAGGATCCGGAACAGAGTGCTGGCCATGTAGACATCACGGTTTGGT
GGCGCGAACCCGGCACCTGTCTCAACGAAATGCTCGGCATGGGCCGCCTG
GAGCTCAGGGAGCTCTACAGGGCATCCCTGTTGGAGCAGTGCAAGTGCAT
TGCCATTCGGCGACGCGACGTCCACCTGGGTAGCGTGTACTTGAAGATCA
GTCTGCTTCAGAATTTGAATGGTAGCCCGGAGCAGCCGCAGCAACAGCAG
CAGCAGCCGGGCCAAAAGAACGAAAGTGGAAACAAGGCAGCAGTTAATTG
CAACTCGAAGGCCGTTTTAACGCCCCCTCAGCCGCCGGCGCCGCCACCTC
CTCCTCCCCAAGCCAACAACAACAGCAAGGCCATCTTGGAGTGCATCAAC
TTCATGGCAGAGACCAATAAAGTCCGTCTCCTCAGGGGTTATCTCTACGC
CGGGGAGCTGCGTCAATTAACGGCGGGCGGTAGTAAGACCGCGTGCCAGG
AGCTATCACTTGAGCCCTTCTGGCAGCCGCAGCCACTGCTGAGCAAGTTA
ACCGATGGGGGATCCTTCGAGCTGCAGGAGCAATTCGCCATCATCAATGA
TGAGCGCTTCCTGCAGAGCGTCGAGCGGCAGCAGCTGGTCATGGAGCTGC
GTCCATTGGGAGGAGTCGTACGACTTCCGCTGCACCAGTTCTTCATCGCC
TACAGAGACTCCAGCATCACAAATCACCTGTGCAAGGGAAAGCTACCAGT
GATCTCCATCGATGGCTGGGCACCAATTGTCAGTGCTGAGAACAAGACGC
CTCTGGGCGAGCTCAAGGTGCTTCTGGCCATTGGAAGTGAGTCGCAGATT
GCTCAACTGAAGCAGCTGCGTGGCTTCGACCATGACAACAACCAAGTACC
GGCTCCAAGCCGGACCACAGACTTACTCGACATGCTTCAAAATGCCATCG
CAGCTCCGACGCCGAATATCGCAGGTCCAGTAATGCCGCCGCCACCGGCT
CCTCCAGCGCCCAGTACCTTTAGCTTCCAGTTGCGCATCGTGGGAGCTGC
TGGACTGCCCCTAAATCCCGGCTATGGGAAATCGAAGAAGCAAGTAAAAC
GTCAGTCGGCAGCCAAGCGCTTCCCGCCCAACGAACCTCCCAACACCTAT
GTGACCTTCCAGGCCATCAGTTGCAATAGTCAGACCTATAAGTCGCACGA
AGGATTGGTGTACGCCACACCAATTGTACCCAAATCGACGAAGCCCCAGT
GGCTTAGCAAGTTCCGCGTGGACGTGAGTCGCGATTATCGCAGCAATCCC
CAGAAGCTTTTCATTCTGAAGCTTTGGAAAAAGGCGGTTGTTAGCCCAAA
TGGCATCACAGAGCCGTCTCCCCATGAAGATGCCATAATAGGATTCGCTG
CACTTAATCTTAACCAAAAACAAGCGGGCGGAGGCTTTCCCAGCGGATGG
CATAACATAGTAGACTTCAATGGACGTGTGACTGGGGGAATCGAGGCGCA
CGTGGAGCCCATATCGCCCAGTGTAGATACCGTAATCGATCAGTTCGAGA
AGTCCATGGAACTGGGTCACTTGCAGTTGGGCCAGGCCATCAAGCGCAAA
TACACGGAGCTGGAGGAGATCTCGCAGAGATTGCGATCTCGGCTGGTGGA
TGTGACGGGGGAAACGCTGAAGTTCCCGGAATTCGATGTCGACTCCGCAT
TGGACAGTTGGCAACAGGAGGGAGATGACGATGATTTAGCGGAGGACTTT
GAACGCTCCCTACGCACTCCCACGCCCCCTGGCTCGCCAACGCCCTCCAC
CAGCACCGCCGCACAAAATCTCAGAAACTCGAACGGTCAGGAATAGAAGC
TTTCTAGACCAT
BS15292.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:36:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32425-RA | 2280 | CG32425-PA | 1..2280 | 17..2296 | 11400 | 100 | Plus |
| CG32425-RE | 2280 | CG32425-PE | 1..2280 | 17..2296 | 11400 | 100 | Plus |
| CG32425-RC | 1443 | CG32425-PC | 1..1443 | 854..2296 | 7215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:36:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32425-RA | 2813 | CG32425-RA | 113..2392 | 17..2296 | 11400 | 100 | Plus |
| CG32425-RE | 2827 | CG32425-RE | 127..2406 | 17..2296 | 11400 | 100 | Plus |
| CG32425-RC | 2077 | CG32425-RC | 104..1656 | 744..2296 | 7765 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:36:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20510053..20510779 | 17..743 | 3635 | 100 | Plus |
| 3L | 28110227 | 3L | 20512519..20513075 | 1191..1747 | 2785 | 100 | Plus |
| 3L | 28110227 | 3L | 20513138..20513686 | 1748..2296 | 2745 | 100 | Plus |
| 3L | 28110227 | 3L | 20511934..20512385 | 741..1192 | 2260 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:36:46 has no hits.
BS15292.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:42 Download gff for
BS15292.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32425-RA | 113..2392 | 17..2296 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:52:41 Download gff for
BS15292.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32425-RE | 127..2406 | 17..2296 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:52:43 Download gff for
BS15292.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32425-RE | 127..2406 | 17..2296 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:52:43 Download gff for
BS15292.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20510053..20510779 | 17..743 | 100 | -> | Plus |
| 3L | 20511937..20512385 | 744..1192 | 100 | -> | Plus |
| 3L | 20512521..20513075 | 1193..1747 | 100 | -> | Plus |
| 3L | 20513138..20513686 | 1748..2296 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:52:41 Download gff for
BS15292.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20503153..20503879 | 17..743 | 100 | -> | Plus |
| arm_3L | 20505037..20505485 | 744..1192 | 100 | -> | Plus |
| arm_3L | 20505621..20506175 | 1193..1747 | 100 | -> | Plus |
| arm_3L | 20506238..20506786 | 1748..2296 | 100 | | Plus |
BS15292.pep Sequence
Translation from 16 to 2295
> BS15292.pep
MEAMKKLDADLVALFATAASAEPLKIRKQQEVLWPGAEPEQTAQESEDDE
LVMTPELFRSCNALQLHLEALTLQPEGTQRMELVQNEVRPIFTVECQLSG
DLIRKVPRQPMFHIMQFESEKFQSLTQCTRFGQTAQRQVDMEDKSLQDPE
QSAGHVDITVWWREPGTCLNEMLGMGRLELRELYRASLLEQCKCIAIRRR
DVHLGSVYLKISLLQNLNGSPEQPQQQQQQPGQKNESGNKAAVNCNSKAV
LTPPQPPAPPPPPPQANNNSKAILECINFMAETNKVRLLRGYLYAGELRQ
LTAGGSKTACQELSLEPFWQPQPLLSKLTDGGSFELQEQFAIINDERFLQ
SVERQQLVMELRPLGGVVRLPLHQFFIAYRDSSITNHLCKGKLPVISIDG
WAPIVSAENKTPLGELKVLLAIGSESQIAQLKQLRGFDHDNNQVPAPSRT
TDLLDMLQNAIAAPTPNIAGPVMPPPPAPPAPSTFSFQLRIVGAAGLPLN
PGYGKSKKQVKRQSAAKRFPPNEPPNTYVTFQAISCNSQTYKSHEGLVYA
TPIVPKSTKPQWLSKFRVDVSRDYRSNPQKLFILKLWKKAVVSPNGITEP
SPHEDAIIGFAALNLNQKQAGGGFPSGWHNIVDFNGRVTGGIEAHVEPIS
PSVDTVIDQFEKSMELGHLQLGQAIKRKYTELEEISQRLRSRLVDVTGET
LKFPEFDVDSALDSWQQEGDDDDLAEDFERSLRTPTPPGSPTPSTSTAAQ
NLRNSNGQE*
BS15292.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:35:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32425-PA | 759 | CG32425-PA | 1..759 | 1..759 | 3959 | 100 | Plus |
| CG32425-PE | 759 | CG32425-PE | 1..759 | 1..759 | 3959 | 100 | Plus |
| CG32425-PC | 480 | CG32425-PC | 1..480 | 280..759 | 2500 | 100 | Plus |
| CG32425-PB | 246 | CG32425-PB | 1..242 | 1..242 | 1251 | 100 | Plus |
| CG32425-PF | 530 | CG32425-PF | 285..526 | 1..242 | 1251 | 100 | Plus |
