Clone Sequence Records
BS15293.complete Sequence
2999 bp assembled on 2009-12-07
GenBank Submission: KX804976
> BS15293.complete
GAAGTTATCAGTCGACATGGACAGGATTATAAAATCTGAAATCAAGAAGG
AACAGATCACGGGTATTCCTTCGGTGGCCCTTCATGGCATCGAGAACTCG
ATGCAGGACGATAGAGATGTCAACACTGACGTGGAGGAGGACTTCACGGA
GGAGGAGTTGGAGCTATTCACAGATCAGGATTCAGACACGGGAGATTCTG
ATGTGTCGCTCACGCAGCCTGAGGCAGCGCGCAGTGTGCTTTTGAGCAAT
GCTCCTATGCGCAAGTACCCTTTTAAGCTGAAGCAAAGCGAATCTGGGAA
CGTCCTAACCGTTCACCACACGATCAAGGAAGCAGGTCAGGCACTGCGCA
TCCAGATTGCCGCCTGCTGCTTCAACGAACTTAGCAACAAGCTGGTGGTA
ATAGACAAGCGTGGCAATGTTTTCGTCTTTGACTTTGTACGCAAACGCTA
CTGGCGGCTGGGATTCCGGATGCCCAAGGCCAAGCTCATTCGGCCATCCC
CTCTGCACGGTAGCGACTACATTGTAGGCAATAAAACGGGCCACATTTTC
ACCATAGACGTGGACAACTCAATTCTTGGGGTCGACGGAGAAGTGGGAAG
CGCAGCGCTTGAGGAATTGAGTTGGAGCAATAGCCTGCAGAATGCACGCT
CCTCTATCGCTCTGATGCGTTTCGGCAGCGATGCACTTCTGGTGAATCTC
CATACTCTGGAGGTTTCCCATCAGCTGGATTTCGATCAGTCGCGCTACAC
GCTGAAGTTCGCTGCCTTCCTGCCCCACTCGGACCAGTTCTTTATAGGGT
TTTCTAACGATTCTCTGCATGTGTGGTCCTCGCATTCATTGAGCACTTTG
CGGATGGGCCAGCCTATCAAGGCCAGGAATCGCAAACTGAGACTGCTACC
AGCCGCAGAATCTATACCGGAAATAGTTCTCCGAAGCCCGGATGACAGTG
ACTTGGAGGAGGACTTGACGTTTGACTGCCAGCACTACGACTTTGCCGAT
GGAATGCTACTCAGCTACTGCTTCACCCCCGACGGCAACAAGATGTGCCT
TAGTACCTTGGATGGCTATCTTTTATTGCTGAGCGTGGCCTCTTTTGATC
TGGAAAAGATGTACCGCTTGACGGACTTTACTCTCCACCAAATGGCTTTC
CTCTCGCAGCCAAAGGAGCGCATAGTGTTTGGAATCACCACCAGAAACCA
AGCGGTCATGCTGGATTTAGCCAATACGGATCACAAGCTAATTGTGCAGC
GCTCCAATGCACGAAGTTTGAGTCTGAGTCGGGATGGCAAGCTGTTGAGT
GTAACGTCTCGCTGCGGAGAAGTCAATGTGTGGTCCACGTGCCGCATTTT
TAACGCCCTGCAAGCTCAGATCCGCTGCCTCAGCCAGGTGAAGTCCACTT
TCAAACAACCGAATCCTCTGCCGCCCTGCAGCGTCGGTGGAGGCGTTAGC
AAAGAACTGCGAGATCTGCTCAATCCGCAGCGCCTAAAAACCATGCTCAA
GGAGTACGGTTGCTATCCTGAAAAGTACAGGTACCTAATTTGGACATCCC
TCTTAGACCTGCCCTGCAATGGGCCTCAATTCCAGGAACTGATCAAACTG
GGGGCACCTCTCCTGGTCAGAAATCGGGCCAAGAAGCTTAAGATTCGCAA
CGATCACCAACGCCGTGTTGTGATTAAGATTTGGAGTTGCCTTGCTCAAT
GGTGCAAGGTCTTAGCTCACGCAGATTTTATGCCACACCTGATTTTTCCG
TTTGTGAAGCGAATGCCCAAGAATAGTCTGGTTTGCTTTGAGTTAATCGC
TACCCTTGTATTGAATCATTTTCAGCTGTGTTTCGAATTTCATCCGCTGC
CGCCCTCCAATTATCTGGCCATGTGCGAAAATATCCTGCAGCACTGTGAC
GAACAGCTTTGCAAGTTTTATAAATCCCAGGAGATGTTGCCTAAAGATTT
TGCCTGGCCCCTTCTGAGCACTGCCTTTTCCGAGGTCCTTGAAGAGGAGC
AGTGGCTATCGCTGTGGGACAACATATTTTCGGAACCACCCTGGTTTCCA
GTCTTTCTTGTAGTGGCCTACAATTTGATTAATCGAGAGATAATCTTGCG
GCTGCCAGACAAGCGATCAGTCCTCTTCTTCTTCCACGATCAGAACCCTG
TGGACATCAGCAAACTTCTTTCCAAGGCGCGCAAACTAATGTCCAAATGT
GCGCTTGCACTTCACCCACAGCGTTTCATGACACACTTCAGCCCCATTCC
GAAGGGTGTGTATCCAAAGTTTCTCAAATATCCCAGCGAGTGGATCGATG
AGCAGGAGTATCAAGCAGTATCGTTGATCAAGCACAACCAGGAAATCGAT
GCCCGAATTCGCCATCTTGAGTTGGAGGAGGTTAAAATTATGGAACGCCT
TGAAACAGGACTTAAGCAAGAGGAGCACGCTCGCCGCCTCAAAGAAATGG
AGAGAGTTTACCAGGACACAATCCATCGCGAGGAAGAGCGCATCACCTGC
CAACGGAAAATGCTGCTCACCTACCAAATGGAGGTGCGTCGGCGCAAGAG
CGAGGTCATCACTAAGTTACAGGAGTCTGAGCAGCGACGCAAAATTCTGG
AGATGGAGAAGGACATGGACCTGCTGATGCACAGTATTGAGCGTGAGCGT
CGGCGTCACAACCAAGAAATGCAGCTGGCCGAAGATGAAATTCGTAACCA
GGAGATGGAGCTCCTTGCCCAGCGCTACTACTCGGATACGGAGGGTGCTC
CACTGGCACAGAAGTATTACGACAAAATCCAGAAACTTTGCTATCAGCGT
GATCAGCTGCAGAAAAACTTGCGTGATATGACCATGGAACAGCTGCGAAC
TCCAGCAACATCATCTGTGCAATTTAGTCCCCAGCTGGTGGATATCGAGA
ATTCCATTTTTGAGATACAGAGAGAGTTTACGGAAATCATAACCACAGAC
AAAACATTGGAGTACAGAAGGAATTTAACTTAAAAGCTTTCTAGACCAT
BS15293.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:50:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16896-RA | 2967 | CG16896-PA | 1..2967 | 17..2983 | 14835 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:50:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16896-RA | 3322 | CG16896-RA | 271..3239 | 15..2983 | 14845 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:50:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24871709..24874125 | 2827..411 | 12085 | 100 | Minus |
| 2R | 25286936 | 2R | 24874359..24874642 | 298..15 | 1420 | 100 | Minus |
| 2R | 25286936 | 2R | 24871490..24871645 | 2983..2828 | 780 | 100 | Minus |
| 2R | 25286936 | 2R | 24874187..24874301 | 411..297 | 575 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:50:57 has no hits.
BS15293.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:42:09 Download gff for
BS15293.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16896-RA | 258..3222 | 17..2981 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:59:27 Download gff for
BS15293.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16896-RA | 273..3237 | 17..2981 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:19:20 Download gff for
BS15293.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16896-RA | 258..3222 | 17..2981 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:58:14 Download gff for
BS15293.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16896-RA | 273..3237 | 17..2981 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:58:14 Download gff for
BS15293.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24874360..24874640 | 17..297 | 100 | | Minus |
| 2R | 24871492..24871645 | 2828..2981 | 100 | <- | Minus |
| 2R | 24871709..24874124 | 412..2827 | 100 | <- | Minus |
| 2R | 24874187..24874300 | 298..411 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:59:27 Download gff for
BS15293.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20759015..20759168 | 2828..2981 | 100 | <- | Minus |
| arm_2R | 20759232..20761647 | 412..2827 | 100 | <- | Minus |
| arm_2R | 20761710..20761823 | 298..411 | 100 | <- | Minus |
| arm_2R | 20761883..20762163 | 17..297 | 100 | | Minus |
BS15293.3prime Sequence
831 bp (731 high quality bases) assembled on 2006-10-24
> BS15293.3prime
ATGGTCTAGAAAGCTTTTAACCTTAAATTCCTTCTGTACTCCAATGTTTT
GTCTGTGGTTATGATTTCCGTAAACTCTCTCTGTATCTCAAAAATGGAAT
TCTCGATATCCACCAGCTGGGGACTAAATTGCACAGATGATGTTGCTGGA
GTTCGCAGCTGTTCCATGGTCATATCACGCAAGTTTTTCTGCAGCTGATC
ACGCTGATAGCAAAGTTTCTGGATTTTGTCGTAATACTTCTGTGCCAGTG
GAGCACCCTCCGTATCCGAGTAGTAGCGCTGGGCAAGGAGCTCCATCTCC
TGGTTACGAATTTCATCTTCGGCCAGCTGCATTTCTTGGTTGTGACGCCG
ACGCTCACGCTCAATACTGTGCATCAGCAGGTCCATGTCCTTCTCCATCT
CCAGAATTTTGCGTCGCTGCTCAGACTCCTGTAACTTAGTGATGACCTCG
CTCTTGCGCCGACGCACCTCCATTTGGTAGGTGAGCAGCATTTTCCGTTG
GCAGGTGATGCGCTCTTCCTCGCGATGGATTGTGTCCTGGTAAACTCTCT
CCATTTCTTTGAGGCGGCGAGCGTGCTCCTCTTGCTTAAGTCCTGTTTCA
AGGCGTTCCATAATTTTAACCTCCTCCAACTCAAGATGGCGAATTCGGGC
ATCGATTTCCTGGTTGTGCTTGATCAACGATACTGCTTGATACTCCTGCT
CATCGATCCACTCGCTGGGATATTTGAGAAACTTTGGATACACACCCTTC
GGAATGGGGCTGAAGTGTGTCATGAAACGCTGTGGGTGAAGTGCAAGCGC
ACATTTGGACCTTAGTTTGCGCGCCTTGGAA
BS15293.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:18:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16896-PA | 2967 | CG16896-RA | 2154..2962 | 831..23 | 4020 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:31:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16896-RA | 3322 | CG16896-RA | 2426..3234 | 831..23 | 4030 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:31:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24871709..24872366 | 174..831 | 3275 | 99.8 | Plus |
| 2R | 25286936 | 2R | 24871495..24871645 | 23..173 | 755 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 03:31:13 has no hits.
BS15293.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:22:43 Download gff for
BS15293.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16896-PA | 2156..2967 | 17..829 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:58:03 Download gff for
BS15293.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16896-PA | 2156..2967 | 17..829 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:05:53 Download gff for
BS15293.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16896-RA | 2426..3239 | 17..831 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:28:36 Download gff for
BS15293.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16896-RA | 2426..3239 | 17..831 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:28:36 Download gff for
BS15293.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24871490..24871645 | 17..173 | 98 | <- | Plus |
| 2R | 24871709..24872366 | 174..831 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:05:53 Download gff for
BS15293.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20759013..20759168 | 17..173 | 98 | <- | Plus |
| arm_2R | 20759232..20759889 | 174..831 | 99 | | Plus |
BS15293.5prime Sequence
870 bp (784 high quality bases) assembled on 2006-10-24
> BS15293.5prime
GAAGTTATCAGTCGACATGGACAGGATTATAAAATCTGAAATCAAGAAGG
AACAGATCACGGGTATTCCTTCGGTGGCCCTTCATGGCATCGAGAACTCG
ATGCAGGACGATAGAGATGTCAACACTGACGTGGAGGAGGACTTCACGGA
GGAGGAGTTGGAGCTATTCACAGATCAGGATTCAGACACGGGAGATTCTG
ATGTGTCGCTCACGCAGCCTGAGGCAGCGCGCAGTGTGCTTTTGAGCAAT
GCTCCTATGCGCAAGTACCCTTTTAAGCTGAAGCAAAGCGAATCTGGGAA
CGTCCTAACCGTTCACCACACGATCAAGGAAGCAGGTCAGGCACTGCGCA
TCCAGATTGCCGCCTGCTGCTTCAACGAACTTAGCAACAAGCTGGTGGTA
ATAGACAAGCGTGGCAATGTTTTCGTCTTTGACTTTGTACGCAAACGCTA
CTGGCGGCTGGGATTCCGGATGCCCAAGGCCAAGCTCATTCGGCCATCCC
CTCTGCACGGTAGCGACTACATTGTAGGCAATAAAACGGGCCACATTTTC
ACCATAGACGTGGACAACTCAATTCTTGGGGTCGACGGAGAAGTGGGAAG
CGCAGCGCTTGAGGAATTGAGTTGGAGCAATAGCCTGCAGAATGCACGCT
CCTCTATCGCTCTGATGCGTTTCGGCAGCGATGCACTTCTGGTGAATCTC
CATACTCTGGAGGTTTCCCATCAGCTGGATTTCGATCAGTCGCGCTACAC
GCTGAAGTTCGCTGCCTTCCTGCCCCACTCGGACCAGTTCTTTATAGGGT
TTTCTAACGATTCTCTGCATGTGTGGTCCTCGCATTCATTGAGCACTTTG
CGGATGGGCCAGCCTATCAA
BS15293.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:18:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16896-PA | 2967 | CG16896-RA | 1..854 | 17..870 | 4270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:39:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16896-RA | 3322 | CG16896-RA | 271..1126 | 15..870 | 4280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:39:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24873666..24874125 | 870..411 | 2300 | 100 | Minus |
| 2R | 25286936 | 2R | 24874359..24874642 | 298..15 | 1420 | 100 | Minus |
| 2R | 25286936 | 2R | 24874187..24874301 | 411..297 | 575 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:39:29 has no hits.
BS15293.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:22:44 Download gff for
BS15293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16896-PA | 1..852 | 17..868 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:58:05 Download gff for
BS15293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16896-PA | 1..852 | 17..868 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:38:24 Download gff for
BS15293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16896-RA | 267..1124 | 9..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:10:43 Download gff for
BS15293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16896-RA | 267..1124 | 9..868 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:10:43 Download gff for
BS15293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24874187..24874300 | 298..411 | 100 | <- | Minus |
| 2R | 24874360..24874646 | 9..297 | 98 | | Minus |
| 2R | 24873668..24874124 | 412..868 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:38:24 Download gff for
BS15293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20761883..20762169 | 9..297 | 98 | | Minus |
| arm_2R | 20761191..20761647 | 412..868 | 100 | <- | Minus |
| arm_2R | 20761710..20761823 | 298..411 | 100 | <- | Minus |
BS15293.pep Sequence
Translation from 16 to 2982
> BS15293.pep
MDRIIKSEIKKEQITGIPSVALHGIENSMQDDRDVNTDVEEDFTEEELEL
FTDQDSDTGDSDVSLTQPEAARSVLLSNAPMRKYPFKLKQSESGNVLTVH
HTIKEAGQALRIQIAACCFNELSNKLVVIDKRGNVFVFDFVRKRYWRLGF
RMPKAKLIRPSPLHGSDYIVGNKTGHIFTIDVDNSILGVDGEVGSAALEE
LSWSNSLQNARSSIALMRFGSDALLVNLHTLEVSHQLDFDQSRYTLKFAA
FLPHSDQFFIGFSNDSLHVWSSHSLSTLRMGQPIKARNRKLRLLPAAESI
PEIVLRSPDDSDLEEDLTFDCQHYDFADGMLLSYCFTPDGNKMCLSTLDG
YLLLLSVASFDLEKMYRLTDFTLHQMAFLSQPKERIVFGITTRNQAVMLD
LANTDHKLIVQRSNARSLSLSRDGKLLSVTSRCGEVNVWSTCRIFNALQA
QIRCLSQVKSTFKQPNPLPPCSVGGGVSKELRDLLNPQRLKTMLKEYGCY
PEKYRYLIWTSLLDLPCNGPQFQELIKLGAPLLVRNRAKKLKIRNDHQRR
VVIKIWSCLAQWCKVLAHADFMPHLIFPFVKRMPKNSLVCFELIATLVLN
HFQLCFEFHPLPPSNYLAMCENILQHCDEQLCKFYKSQEMLPKDFAWPLL
STAFSEVLEEEQWLSLWDNIFSEPPWFPVFLVVAYNLINREIILRLPDKR
SVLFFFHDQNPVDISKLLSKARKLMSKCALALHPQRFMTHFSPIPKGVYP
KFLKYPSEWIDEQEYQAVSLIKHNQEIDARIRHLELEEVKIMERLETGLK
QEEHARRLKEMERVYQDTIHREEERITCQRKMLLTYQMEVRRRKSEVITK
LQESEQRRKILEMEKDMDLLMHSIERERRRHNQEMQLAEDEIRNQEMELL
AQRYYSDTEGAPLAQKYYDKIQKLCYQRDQLQKNLRDMTMEQLRTPATSS
VQFSPQLVDIENSIFEIQREFTEIITTDKTLEYRRNLT*
BS15293.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:13:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16896-PA | 988 | CG16896-PA | 1..988 | 1..988 | 5145 | 100 | Plus |
