Clone Sequence Records
BS15294.3prime Sequence
896 bp (752 high quality bases) assembled on 2006-10-24
> BS15294.3prime
ATGGTCTAGAAAGCTTCTACGATTAGATTACCAAAGAAATCATAAATCCG
CTCACGCAAAGATGTGGGTTTTAGGGCGGAGGACGACTCGCTGGCTAAAG
CAGAAGGCTTCTCGACCAAAACCGGAGACACTGCATCCAAGGTGTCGTCG
AACTTGACGCGCTTTTTCTGCGGCGGCGTGCAGATCTCCTCATGACTCTT
TAAATGCACAGGGAACATATTGTCCCCGTTGAACAGATCCTCTCGCTTTA
CAAATGTTGGTATGGTGTTGTCCACATTGTGGGCCCTGAAATACGATTTG
GAATCGGAGTAGCGACTGGCAAAGCCGTAGCTTGGATCGTGATCATTGTT
AGGCGCCGGTACATTGCTGCGTTTGAGGATGCCGCGTACATTGGCCACCT
TGTCACCGGCAGCAATCTTTTTGTACAACTTTGAGATGCGGTTCTCCTTG
CTGGCGGTGGCCAGCTCTCCAGGCCTTCCCGGCTGGTGGCGCATCTGCAC
TGCCGGAGGCGGTGGAGGAGCTGGTGGTGGTGGTGCAACACGTTTCATGG
AAACAGAGGAGGAGGAGGAGGAGGAGGCCTTTCCCATTGGATTTCCATTT
GGAGCCCTTAAAATTCCACTGGCCACTTTTCGCTTTCGAGAAAAGCAAGC
ACTGTCCTCGGTCTCCTCTTCGGAATCCGTGCTGCGATTCTTATTGCGGA
AAACCGTATCATATTCGCATTTGCGCTTATTGGGACTCAGTACATAATCA
GCTCCGAACTTCTTCATGTCCTTCTTGCGTATGGGCGTTCTTTTGCTCGA
GTCCTTTCGCAGTGTCTTTCGGCACTGAACGTGCAGATCGATGGCATCGC
GGATGAAGCCCACCCAAGTGCGCGACAGCTGCACATCGCCGCTACC
BS15294.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:18:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8606-PA | 1944 | RhoGEF4-RA | 1066..1938 | 896..24 | 4265 | 99.5 | Minus |
| CG8606-PB | 1803 | RhoGEF4-RB | 925..1797 | 896..24 | 4265 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:40:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoGEF4-RB | 1933 | CG8606-RB | 968..1848 | 896..15 | 4310 | 99.3 | Minus |
| RhoGEF4-RA | 2132 | CG8606-RA | 1167..2047 | 896..15 | 4310 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:40:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7321192..7321884 | 24..716 | 3405 | 99.4 | Plus |
| 3L | 28110227 | 3L | 7321943..7322123 | 716..896 | 905 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:40:45 has no hits.
BS15294.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:22:45 Download gff for
BS15294.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8606-PB | 925..1803 | 17..896 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:58:06 Download gff for
BS15294.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8606-PB | 925..1803 | 17..896 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:38:48 Download gff for
BS15294.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGEF4-RA | 1167..2049 | 12..896 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:15:30 Download gff for
BS15294.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGEF4-RA | 1167..2049 | 12..896 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:15:30 Download gff for
BS15294.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7321195..7321884 | 27..716 | 99 | <- | Plus |
| 3L | 7321944..7322123 | 717..896 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:38:48 Download gff for
BS15294.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7314295..7314984 | 27..716 | 99 | <- | Plus |
| arm_3L | 7315044..7315223 | 717..896 | 100 | | Plus |
BS15294.5prime Sequence
872 bp (793 high quality bases) assembled on 2006-10-24
> BS15294.5prime
GAAGTTATCAGTCGACATGCTGGACAGCAACAACAGCAGTCCGATTGGCT
CCCCCAATCCGGACGCGGGAAAAAGATTGGGTTTCCGTCGCCAGGCCATC
CAGGAGATTATTTCGTCGGAGAAATCGTATCTGGAGCAGCTGGAGCTGCT
GATGAACTTTTTTGTGCGTCCCTTGAAGGAACAGGCTATCATCGATTGCT
CCAATCACACGCTGCTCTTCGGTCAAATCGAGATGATTCACAATCTTAAC
GGAGAATTCCTGCGCGAACTGGAGGCGAACATGGAGAATGTTGCGCACGC
ATTCCTGAAAATGGCTCCTTTCTTCAAACTGTACTCGGTGTACGCCTTTG
ACTACCGCGGAGCTCTGTTCATCATCCAGGATTTGATCAGCAAGAATCCG
GTGTTCCGAAAGTTTCTGGAGCAGACCGAGAGTCGTCCGGAGGTGCAACG
CAAGCTAAATTCGCTGATGATTGTGCCCATCCAGCGGGTACCGCGGTATA
AGCTTCTTCTGGAGCAGGTACTGCTCTACACGAGTCCCGCAGATGCTGAC
TATAAGTTGTTGAAAGAATCCGTCAAGGAGATCGAGGCCACCGCCAGTCA
CATAAACACCTGTGTGGAGGAGCAGGAAATTACCCAGTATCTGATTCATT
TGCAGAACTCTTTGGTGAATCGCACACCGAACATTGTGAAGCCCTCGCGA
CGGGTAATCAAGGAGGGTGTACTGCAGAAGATCACTCACAAGGGCACGGA
AATCAAGCGCTACTGTGTTCTCATGTCCGACATCTTCATGTACTGCAAGA
TGATCAAGGAACGTGCGCCCCACACCGTTGTGGAAAACTCACTGAAGTGT
TGCTGTATTTTTCCGTTGAAAA
BS15294.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:18:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8606-PA | 1944 | RhoGEF4-RA | 141..997 | 16..872 | 4235 | 99.7 | Plus |
| CG8606-PB | 1803 | RhoGEF4-RB | 1..856 | 17..872 | 4230 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:30:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoGEF4-RB | 1933 | CG8606-RB | 43..899 | 16..872 | 4255 | 99.8 | Plus |
| RhoGEF4-RA | 2132 | CG8606-RA | 242..1098 | 16..872 | 4255 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:30:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7322555..7323105 | 566..16 | 2755 | 100 | Minus |
| 3L | 28110227 | 3L | 7322192..7322499 | 872..565 | 1510 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-11 03:30:16 has no hits.
BS15294.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:22:46 Download gff for
BS15294.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8606-PA | 139..993 | 12..868 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:58:08 Download gff for
BS15294.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8606-PA | 139..993 | 12..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:05:41 Download gff for
BS15294.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGEF4-RA | 240..1094 | 12..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:10:01 Download gff for
BS15294.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGEF4-RA | 240..1094 | 12..868 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:10:01 Download gff for
BS15294.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7322196..7322497 | 567..868 | 99 | <- | Minus |
| 3L | 7322555..7323107 | 12..566 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:05:41 Download gff for
BS15294.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7315296..7315597 | 567..868 | 99 | <- | Minus |
| arm_3L | 7315655..7316207 | 12..566 | 99 | | Minus |
BS15294.complete Sequence
1836 bp assembled on 2008-08-14
GenBank Submission: KX800258
> BS15294.complete
GAAGTTATCAGTCGACATGCTGGACAGCAACAACAGCAGTCCGATTGGCT
CCCCCAATCCGGACGCGGGAAAAAGATTGGGTTTCCGTCGCCAGGCCATC
CAGGAGATTATTTCGTCGGAGAAATCGTATCTGGAGCAGCTGGAGCTGCT
GATGAACTTTTTTGTGCGTCCCTTGAAGGAACAGGCTATCATCGATTGCT
CCAATCACACGCTGCTCTTCGGTCAAATCGAGATGATTCACAATCTTAAC
GGAGAATTCCTGCGCGAACTGGAGGCGAACATGGAGAATGTTGCGCACGC
ATTCCTGAAAATGGCTCCTTTCTTCAAACTGTACTCGGTGTACGCCTTTG
ACTACCGCGGAGCTCTGTTCATCATCCAGGATTTGATCAGCAAGAATCCG
GTGTTCCGAAAGTTTCTGGAGCAGACCGAGAGTCGTCCGGAGGTGCAACG
CAAGCTAAATTCGCTGATGATTGTGCCCATCCAGCGGGTACCGCGGTATA
AGCTTCTTCTGGAGCAGGTACTGCTCTACACGAGTCCCGCAGATGCTGAC
TATAAGTTGTTGAAAGAATCCGTCAAGGAGATCGAGGCCACCGCCAGTCA
CATAAACACCTGTGTGGAGGAGCAGGAAATTACCCAGTATCTGATTCATT
TGCAGAACTCTTTGGTGAATCGCACACCGAACATTGTGAAGCCCTCGCGA
CGGGTAATCAAGGAGGGTGTACTGCAGAAGATCACTCACAAGGGCACGGA
AATCAAGCGCTACTGTGTTCTCATGTCCGACATCTTCATGTACTGCAAGA
TGATCAAGGAACGTGCGCCCAACACCGTTGTGGAAAACTCACTGGAGTGT
TGCTGTATTTTTCCGTTGAAAAAATGCAAAGTGTACGAAATGCTGCCGGG
CAACTTTAAGCTTACTTGCCAAAGTGATGGCATAATCTTCGGTAGCGGCG
ATGTGCAGCTGTCGCGCACTTGGGTGGGCTTCATCCGCGATGCCATCGAT
CTGCACGTTCAGTGCCGAAAGACACTGCGAAAGGACTCGAGCAAAAGAAC
GCCCATACGCAAGAAGGACATGAAGAAGTTCGGAGCTGATTATGTACTGA
GTCCCAATAAGCGCAAATGCGAATATGATACGGTTTTCCGCAATAAGAAT
CGCAGCACGGATTCCGAAGAGGAGACCGAGGACAGTGCTTGCTTTTCTCG
AAAGCGAAAAGTGGCCAGTGGAATTTTAAGGGCTCCAAATGGAAATCCAA
TGGGAAAGGCCTCCTCCTCCTCCTCCTCCTCTGTTTCCATGAAACGTGTT
GCACCACCACCACCAGCTCCTCCACCGCCTCCGGCAGTGCAGATGCGCCA
CCAGCCGGGAAGGCCTGGAGAGCTGGCCACCGCCAGCAAGGAGAACCGCA
TCTCAAAGTTGTACAAAAAGATTGCTGCCGGTGACAAGGTGGCCAATGTA
CGCGGCATCCTCAAACGCAGCAATGTACCGGCGCCTAACAATGATCACGA
TCCAAGCTACGGCTTTGCCAGTCGCTACTCCGATTCCAAATCGTATTTCA
GGGCCCACAATGTGGACAACACCATACCAACATTTGTAAAGCGAGAGGAT
CTGTTCAACGGGGACAATATGTTCCCTGTGCATTTAAAGAGTCATGAGGA
GATCTGCACGCCGCCGCAGAAAAAGCGCGTCAAGTTCGACGACACCTTGG
ATGCAGTGTCTCCGGTTTTGGTCGAGAAGCCTTTTGCTTTCTCCAGCGAG
TCGTCCTCCGCCCTAAAACCCACATCTTTGCGTGAGCGGATTTATGATTT
CTTTGCTAATCTATTCTTAGAAGCTTTCTAGACCAT
BS15294.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:56:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoGEF4-RA | 1944 | CG8606-PA | 141..1942 | 16..1817 | 9010 | 100 | Plus |
| RhoGEF4-RB | 1803 | CG8606-PB | 1..1801 | 17..1817 | 9005 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:56:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoGEF4-RB | 1933 | CG8606-RB | 43..1844 | 16..1817 | 9010 | 100 | Plus |
| RhoGEF4-RA | 2132 | CG8606-RA | 242..2043 | 16..1817 | 9010 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:56:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7321188..7321884 | 1817..1121 | 3485 | 100 | Minus |
| 3L | 28110227 | 3L | 7321943..7322499 | 1121..565 | 2785 | 100 | Minus |
| 3L | 28110227 | 3L | 7322555..7323105 | 566..16 | 2755 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:56:51 has no hits.
BS15294.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:45:35 Download gff for
BS15294.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGEF4-RB | 41..1850 | 12..1825 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:05:37 Download gff for
BS15294.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGEF4-RA | 243..2045 | 17..1820 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:05:26 Download gff for
BS15294.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGEF4-RB | 44..1846 | 17..1820 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:34:46 Download gff for
BS15294.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGEF4-RA | 243..2045 | 17..1820 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:34:46 Download gff for
BS15294.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7321186..7321884 | 1121..1820 | 99 | <- | Minus |
| 3L | 7321944..7322497 | 567..1120 | 100 | <- | Minus |
| 3L | 7322555..7323104 | 17..566 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:05:37 Download gff for
BS15294.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7314286..7314984 | 1121..1820 | 99 | <- | Minus |
| arm_3L | 7315044..7315597 | 567..1120 | 100 | <- | Minus |
| arm_3L | 7315655..7316204 | 17..566 | 100 | | Minus |
BS15294.pep Sequence
Translation from 16 to 1830
> BS15294.pep
MLDSNNSSPIGSPNPDAGKRLGFRRQAIQEIISSEKSYLEQLELLMNFFV
RPLKEQAIIDCSNHTLLFGQIEMIHNLNGEFLRELEANMENVAHAFLKMA
PFFKLYSVYAFDYRGALFIIQDLISKNPVFRKFLEQTESRPEVQRKLNSL
MIVPIQRVPRYKLLLEQVLLYTSPADADYKLLKESVKEIEATASHINTCV
EEQEITQYLIHLQNSLVNRTPNIVKPSRRVIKEGVLQKITHKGTEIKRYC
VLMSDIFMYCKMIKERAPNTVVENSLECCCIFPLKKCKVYEMLPGNFKLT
CQSDGIIFGSGDVQLSRTWVGFIRDAIDLHVQCRKTLRKDSSKRTPIRKK
DMKKFGADYVLSPNKRKCEYDTVFRNKNRSTDSEEETEDSACFSRKRKVA
SGILRAPNGNPMGKASSSSSSSVSMKRVAPPPPAPPPPPAVQMRHQPGRP
GELATASKENRISKLYKKIAAGDKVANVRGILKRSNVPAPNNDHDPSYGF
ASRYSDSKSYFRAHNVDNTIPTFVKREDLFNGDNMFPVHLKSHEEICTPP
QKKRVKFDDTLDAVSPVLVEKPFAFSSESSSALKPTSLRERIYDFFANLF
LEAF*
BS15294.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:16:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoGEF4-PB | 600 | CG8606-PB | 1..600 | 1..600 | 3114 | 100 | Plus |
| RhoGEF4-PA | 647 | CG8606-PA | 48..647 | 1..600 | 3114 | 100 | Plus |
| sif-PL | 1270 | CG34418-PL | 643..908 | 25..261 | 193 | 25.7 | Plus |
| sif-PA | 2052 | CG34418-PA | 1418..1683 | 25..261 | 193 | 25.7 | Plus |
| sif-PC | 2061 | CG34418-PC | 1427..1692 | 25..261 | 193 | 25.7 | Plus |
