Clone Sequence Records
BS15296.complete Sequence
1040 bp assembled on 2010-02-09
GenBank Submission: KX804596
> BS15296.complete
GAAGTTATCAGTCGACATGCCCTTCTCCTCCTGCCGCACCATCGAGGAGC
GCCTGACGGAAGCCCAGAAGGCCGGACAGAAGGTGCCAGCCGACTACGCC
AGTTACCTGCAGAAGGCACTCTGCGGCGAGTTCAATGGAGTGCGCCACTT
CTGCTGCCCCTCAGCCAACATTCAGCACAACTCCAAGGTGATGAGCCTGT
TCAAGGACGAAAACTTTGACTGCGGCAACTTCCTCAGCCAAAGAGTGTCC
AATGGCTACGAGGTGAAGCTCTCCTCCAGACCCTGGATGGCCCTGCTCCG
TTATCAGCAGTTTGGAGAGTCCAGATTCCTTTGCGGCGGAGCTATGATAT
CCGAGCGCTACATCCTGACTGCTGCTCACTGTGTCCACGGTCTTCAGAAC
GATCTTTATGAGATCCGGCTCGGCGAGCACCGCATCTCTACGGAGGAGGA
TTGCCGGCAGCAGGGACGCAAGAAGAAATGTGCCCCGCCAGTTGTGAATG
TGGGCATTGAGAAGCATCTGATTCATGAGAAGTACGACGCCCGCCACATC
ATGCATGACATAGCTCTCCTGAAGCTCAACAGGAGCGTCCCCTTCCAGAA
GCACATCAAGCCCATTTGCCTGCCCATCACGGATGAGCTGAAGGAGAAGG
CAGAGCAGATAAGCACCTACTTCGTGACCGGCTGGGGCACCACGGAGAAC
GGCTCGTCGTCGGATGTGTTGCTCCAGGCGAACGTGCCGCTGCAGCCGCG
ATCCGCCTGTTCCCAGGCCTACCGCAGGGCAGTGCCGCTCAGTCAACTTT
GCGTGGGTGGTGGCGACCTGCAGGACTCCTGCAAGGGCGACTCCGGCGGC
CCCCTCCAAGCACCTGCCCAGTACTTGGGCGAGTATGCGCCGAAAATGGT
CGAGTTCGGGATCGTCAGCCAGGGTGTGGTCACCTGCGGGCAGATTAGCC
TGCCCGGTCTGTACACAAATGTGGGCGAGTACGTGCAGTGGATCACGGAC
ACCATGGCCAGCAATGGCCTGTGAAAGCTTTCTAGACCAT
BS15296.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:33:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
grass-RB | 1134 | CG5896-PB | 126..1134 | 16..1024 | 5045 | 100 | Plus |
grass-RA | 1008 | CG5896-PA | 1..1008 | 17..1024 | 5040 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:33:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
grass-RB | 1317 | CG5896-RB | 217..1225 | 16..1024 | 5045 | 100 | Plus |
grass-RA | 1391 | CG5896-RA | 291..1299 | 16..1024 | 5045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:33:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27159265..27159689 | 600..1024 | 2125 | 100 | Plus |
3R | 32079331 | 3R | 27158630..27158845 | 142..357 | 1080 | 100 | Plus |
3R | 32079331 | 3R | 27159008..27159201 | 406..599 | 970 | 100 | Plus |
3R | 32079331 | 3R | 27158238..27158364 | 16..142 | 635 | 100 | Plus |
3R | 32079331 | 3R | 27158903..27158951 | 357..405 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:33:18 has no hits.
BS15296.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:12:12 Download gff for
BS15296.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grass-RB | 220..1226 | 17..1023 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:01:42 Download gff for
BS15296.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grass-RA | 292..1298 | 17..1023 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:00:02 Download gff for
BS15296.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grass-RB | 220..1226 | 17..1023 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:31:29 Download gff for
BS15296.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grass-RA | 292..1298 | 17..1023 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:31:29 Download gff for
BS15296.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27158239..27158364 | 17..142 | 100 | -> | Plus |
3R | 27158631..27158844 | 143..356 | 100 | -> | Plus |
3R | 27158903..27158951 | 357..405 | 100 | -> | Plus |
3R | 27159008..27159201 | 406..599 | 100 | -> | Plus |
3R | 27159265..27159688 | 600..1023 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:01:42 Download gff for
BS15296.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22984353..22984566 | 143..356 | 100 | -> | Plus |
arm_3R | 22984625..22984673 | 357..405 | 100 | -> | Plus |
arm_3R | 22984730..22984923 | 406..599 | 100 | -> | Plus |
arm_3R | 22983961..22984086 | 17..142 | 100 | -> | Plus |
arm_3R | 22984987..22985410 | 600..1023 | 100 | | Plus |
BS15296.5prime Sequence
814 bp (774 high quality bases) assembled on 2006-10-24
> BS15296.5prime
GAAGTTATCAGTCGACATGCCCTTCTCCTCCTGCCGCACCATCGAGGAGC
GCCTGACGGAAGCCCAGAAGGCCGGACAGAAGGTGCCAGCCGACTACGCC
AGTTACCTGCAGAAGGCACTCTGCGGCGAGTTCAATGGAGTGCGCCACTT
CTGCTGCCCCTCAGCCAACATTCAGCACAACTCCAAGGTGATGAGCCTGT
TCAAGGACGAAAACTTTGACTGCGGCAACTTCCTCAGCCAAAGAGTGTCC
AATGGCTACGAGGTGAAGCTCTCCTCCAGACCCTGGATGGCCCTGCTCCG
TTATCAGCAGTTTGGAGAGTCCAGATTCCTTTGCGGCGGAGCTATGATAT
CCGAGCGCTACATCCTGACTGCTGCTCACTGTGTCCACGGTCTTCAGAAC
GATCTTTATGAGATCCGGCTCGGCGAGCACCGCATCTCTACGGAGGAGGA
TTGCCGGCAGCAGGGACGCAAGAAGAAATGTGCCCCGCCAGTTGTGAATG
TGGGCATTGAGAAGCATCTGATTCATGAGAAGTACGACGCCCGCCACATC
ATGCATGACATAGCTCTCCTGAAGCTCAACAGGAGCGTCCCCTTCCAGAA
GCACATCAAGCCCATTTGCCTGCCCATCACGGATGAGCTGAAGGAGAAGG
CAGAGCAGATAAGCACCTACTTCGTGACCGGCTGGGGCACCACGGAGAAC
GGCTCGTCGTCGGATGTGTTGCTCCAGGCGAACGTGCCGCTGCAGCCGCG
ATCCGCCTGTTCCCAGGCCTACCGCATGGCAGTGCCGCTCAGTCAACTTT
TGCGTGGGTGGTGG
BS15296.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:18:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5896-PB | 1134 | CG5896-RB | 126..910 | 16..800 | 3900 | 99.8 | Plus |
CG5896-PA | 1008 | CG5896-RA | 1..784 | 17..800 | 3895 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:06:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
grass-RB | 1317 | CG5896-RB | 217..1014 | 16..814 | 3955 | 99.7 | Plus |
grass-RA | 1391 | CG5896-RA | 291..1088 | 16..814 | 3955 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:06:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27158630..27158845 | 142..357 | 1080 | 100 | Plus |
3R | 32079331 | 3R | 27159265..27159478 | 600..814 | 1010 | 99.1 | Plus |
3R | 32079331 | 3R | 27159008..27159201 | 406..599 | 970 | 100 | Plus |
3R | 32079331 | 3R | 27158238..27158364 | 16..142 | 635 | 100 | Plus |
3R | 32079331 | 3R | 27158903..27158951 | 357..405 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:06:37 has no hits.
BS15296.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:22:47 Download gff for
BS15296.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5896-PB | 116..923 | 3..814 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:58:09 Download gff for
BS15296.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5896-PB | 116..923 | 3..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:24:30 Download gff for
BS15296.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grass-RA | 281..1088 | 3..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:41:24 Download gff for
BS15296.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grass-RA | 281..1088 | 3..814 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:41:24 Download gff for
BS15296.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27158228..27158364 | 3..142 | 96 | -> | Plus |
3R | 27158631..27158844 | 143..356 | 100 | -> | Plus |
3R | 27158903..27158951 | 357..405 | 100 | -> | Plus |
3R | 27159008..27159201 | 406..599 | 100 | -> | Plus |
3R | 27159265..27159478 | 600..814 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:24:30 Download gff for
BS15296.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22983950..22984086 | 3..142 | 96 | -> | Plus |
arm_3R | 22984353..22984566 | 143..356 | 100 | -> | Plus |
arm_3R | 22984625..22984673 | 357..405 | 100 | -> | Plus |
arm_3R | 22984730..22984923 | 406..599 | 100 | -> | Plus |
arm_3R | 22984987..22985200 | 600..814 | 99 | | Plus |
BS15296.pep Sequence
Translation from 16 to 1023
> BS15296.pep
MPFSSCRTIEERLTEAQKAGQKVPADYASYLQKALCGEFNGVRHFCCPSA
NIQHNSKVMSLFKDENFDCGNFLSQRVSNGYEVKLSSRPWMALLRYQQFG
ESRFLCGGAMISERYILTAAHCVHGLQNDLYEIRLGEHRISTEEDCRQQG
RKKKCAPPVVNVGIEKHLIHEKYDARHIMHDIALLKLNRSVPFQKHIKPI
CLPITDELKEKAEQISTYFVTGWGTTENGSSSDVLLQANVPLQPRSACSQ
AYRRAVPLSQLCVGGGDLQDSCKGDSGGPLQAPAQYLGEYAPKMVEFGIV
SQGVVTCGQISLPGLYTNVGEYVQWITDTMASNGL*
BS15296.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:10:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
grass-PA | 335 | CG5896-PA | 1..335 | 1..335 | 1786 | 100 | Plus |
grass-PB | 377 | CG5896-PB | 43..377 | 1..335 | 1786 | 100 | Plus |
CG5909-PA | 381 | CG5909-PA | 52..380 | 20..330 | 483 | 33.5 | Plus |
ea-PA | 392 | CG4920-PA | 72..392 | 30..332 | 479 | 37 | Plus |
ea-PB | 261 | CG4920-PB | 2..261 | 82..332 | 416 | 38.7 | Plus |