Clone BS15296 Report

Search the DGRC for BS15296

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:152
Well:96
Vector:pDNR-Dual
Associated Gene/Transcriptgrass-RA
Protein status:BS15296.pep: full length peptide match
Sequenced Size:1040

Clone Sequence Records

BS15296.complete Sequence

1040 bp assembled on 2010-02-09

GenBank Submission: KX804596

> BS15296.complete
GAAGTTATCAGTCGACATGCCCTTCTCCTCCTGCCGCACCATCGAGGAGC
GCCTGACGGAAGCCCAGAAGGCCGGACAGAAGGTGCCAGCCGACTACGCC
AGTTACCTGCAGAAGGCACTCTGCGGCGAGTTCAATGGAGTGCGCCACTT
CTGCTGCCCCTCAGCCAACATTCAGCACAACTCCAAGGTGATGAGCCTGT
TCAAGGACGAAAACTTTGACTGCGGCAACTTCCTCAGCCAAAGAGTGTCC
AATGGCTACGAGGTGAAGCTCTCCTCCAGACCCTGGATGGCCCTGCTCCG
TTATCAGCAGTTTGGAGAGTCCAGATTCCTTTGCGGCGGAGCTATGATAT
CCGAGCGCTACATCCTGACTGCTGCTCACTGTGTCCACGGTCTTCAGAAC
GATCTTTATGAGATCCGGCTCGGCGAGCACCGCATCTCTACGGAGGAGGA
TTGCCGGCAGCAGGGACGCAAGAAGAAATGTGCCCCGCCAGTTGTGAATG
TGGGCATTGAGAAGCATCTGATTCATGAGAAGTACGACGCCCGCCACATC
ATGCATGACATAGCTCTCCTGAAGCTCAACAGGAGCGTCCCCTTCCAGAA
GCACATCAAGCCCATTTGCCTGCCCATCACGGATGAGCTGAAGGAGAAGG
CAGAGCAGATAAGCACCTACTTCGTGACCGGCTGGGGCACCACGGAGAAC
GGCTCGTCGTCGGATGTGTTGCTCCAGGCGAACGTGCCGCTGCAGCCGCG
ATCCGCCTGTTCCCAGGCCTACCGCAGGGCAGTGCCGCTCAGTCAACTTT
GCGTGGGTGGTGGCGACCTGCAGGACTCCTGCAAGGGCGACTCCGGCGGC
CCCCTCCAAGCACCTGCCCAGTACTTGGGCGAGTATGCGCCGAAAATGGT
CGAGTTCGGGATCGTCAGCCAGGGTGTGGTCACCTGCGGGCAGATTAGCC
TGCCCGGTCTGTACACAAATGTGGGCGAGTACGTGCAGTGGATCACGGAC
ACCATGGCCAGCAATGGCCTGTGAAAGCTTTCTAGACCAT

BS15296.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:33:19
Subject Length Description Subject Range Query Range Score Percent Strand
grass-RB 1134 CG5896-PB 126..1134 16..1024 5045 100 Plus
grass-RA 1008 CG5896-PA 1..1008 17..1024 5040 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:33:20
Subject Length Description Subject Range Query Range Score Percent Strand
grass-RB 1317 CG5896-RB 217..1225 16..1024 5045 100 Plus
grass-RA 1391 CG5896-RA 291..1299 16..1024 5045 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:33:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27159265..27159689 600..1024 2125 100 Plus
3R 32079331 3R 27158630..27158845 142..357 1080 100 Plus
3R 32079331 3R 27159008..27159201 406..599 970 100 Plus
3R 32079331 3R 27158238..27158364 16..142 635 100 Plus
3R 32079331 3R 27158903..27158951 357..405 245 100 Plus
Blast to na_te.dros performed on 2014-11-28 04:33:18 has no hits.

BS15296.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:12:12 Download gff for BS15296.complete
Subject Subject Range Query Range Percent Splice Strand
grass-RB 220..1226 17..1023 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:01:42 Download gff for BS15296.complete
Subject Subject Range Query Range Percent Splice Strand
grass-RA 292..1298 17..1023 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:00:02 Download gff for BS15296.complete
Subject Subject Range Query Range Percent Splice Strand
grass-RB 220..1226 17..1023 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:31:29 Download gff for BS15296.complete
Subject Subject Range Query Range Percent Splice Strand
grass-RA 292..1298 17..1023 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:31:29 Download gff for BS15296.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27158239..27158364 17..142 100 -> Plus
3R 27158631..27158844 143..356 100 -> Plus
3R 27158903..27158951 357..405 100 -> Plus
3R 27159008..27159201 406..599 100 -> Plus
3R 27159265..27159688 600..1023 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:01:42 Download gff for BS15296.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22984353..22984566 143..356 100 -> Plus
arm_3R 22984625..22984673 357..405 100 -> Plus
arm_3R 22984730..22984923 406..599 100 -> Plus
arm_3R 22983961..22984086 17..142 100 -> Plus
arm_3R 22984987..22985410 600..1023 100   Plus

BS15296.5prime Sequence

814 bp (774 high quality bases) assembled on 2006-10-24

> BS15296.5prime
GAAGTTATCAGTCGACATGCCCTTCTCCTCCTGCCGCACCATCGAGGAGC
GCCTGACGGAAGCCCAGAAGGCCGGACAGAAGGTGCCAGCCGACTACGCC
AGTTACCTGCAGAAGGCACTCTGCGGCGAGTTCAATGGAGTGCGCCACTT
CTGCTGCCCCTCAGCCAACATTCAGCACAACTCCAAGGTGATGAGCCTGT
TCAAGGACGAAAACTTTGACTGCGGCAACTTCCTCAGCCAAAGAGTGTCC
AATGGCTACGAGGTGAAGCTCTCCTCCAGACCCTGGATGGCCCTGCTCCG
TTATCAGCAGTTTGGAGAGTCCAGATTCCTTTGCGGCGGAGCTATGATAT
CCGAGCGCTACATCCTGACTGCTGCTCACTGTGTCCACGGTCTTCAGAAC
GATCTTTATGAGATCCGGCTCGGCGAGCACCGCATCTCTACGGAGGAGGA
TTGCCGGCAGCAGGGACGCAAGAAGAAATGTGCCCCGCCAGTTGTGAATG
TGGGCATTGAGAAGCATCTGATTCATGAGAAGTACGACGCCCGCCACATC
ATGCATGACATAGCTCTCCTGAAGCTCAACAGGAGCGTCCCCTTCCAGAA
GCACATCAAGCCCATTTGCCTGCCCATCACGGATGAGCTGAAGGAGAAGG
CAGAGCAGATAAGCACCTACTTCGTGACCGGCTGGGGCACCACGGAGAAC
GGCTCGTCGTCGGATGTGTTGCTCCAGGCGAACGTGCCGCTGCAGCCGCG
ATCCGCCTGTTCCCAGGCCTACCGCATGGCAGTGCCGCTCAGTCAACTTT
TGCGTGGGTGGTGG

BS15296.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:18:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG5896-PB 1134 CG5896-RB 126..910 16..800 3900 99.8 Plus
CG5896-PA 1008 CG5896-RA 1..784 17..800 3895 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:06:38
Subject Length Description Subject Range Query Range Score Percent Strand
grass-RB 1317 CG5896-RB 217..1014 16..814 3955 99.7 Plus
grass-RA 1391 CG5896-RA 291..1088 16..814 3955 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:06:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27158630..27158845 142..357 1080 100 Plus
3R 32079331 3R 27159265..27159478 600..814 1010 99.1 Plus
3R 32079331 3R 27159008..27159201 406..599 970 100 Plus
3R 32079331 3R 27158238..27158364 16..142 635 100 Plus
3R 32079331 3R 27158903..27158951 357..405 245 100 Plus
Blast to na_te.dros performed on 2015-02-12 16:06:37 has no hits.

BS15296.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:22:47 Download gff for BS15296.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5896-PB 116..923 3..814 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:58:09 Download gff for BS15296.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5896-PB 116..923 3..814 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:24:30 Download gff for BS15296.5prime
Subject Subject Range Query Range Percent Splice Strand
grass-RA 281..1088 3..814 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:41:24 Download gff for BS15296.5prime
Subject Subject Range Query Range Percent Splice Strand
grass-RA 281..1088 3..814 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:41:24 Download gff for BS15296.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 27158228..27158364 3..142 96 -> Plus
3R 27158631..27158844 143..356 100 -> Plus
3R 27158903..27158951 357..405 100 -> Plus
3R 27159008..27159201 406..599 100 -> Plus
3R 27159265..27159478 600..814 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:24:30 Download gff for BS15296.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22983950..22984086 3..142 96 -> Plus
arm_3R 22984353..22984566 143..356 100 -> Plus
arm_3R 22984625..22984673 357..405 100 -> Plus
arm_3R 22984730..22984923 406..599 100 -> Plus
arm_3R 22984987..22985200 600..814 99   Plus

BS15296.pep Sequence

Translation from 16 to 1023

> BS15296.pep
MPFSSCRTIEERLTEAQKAGQKVPADYASYLQKALCGEFNGVRHFCCPSA
NIQHNSKVMSLFKDENFDCGNFLSQRVSNGYEVKLSSRPWMALLRYQQFG
ESRFLCGGAMISERYILTAAHCVHGLQNDLYEIRLGEHRISTEEDCRQQG
RKKKCAPPVVNVGIEKHLIHEKYDARHIMHDIALLKLNRSVPFQKHIKPI
CLPITDELKEKAEQISTYFVTGWGTTENGSSSDVLLQANVPLQPRSACSQ
AYRRAVPLSQLCVGGGDLQDSCKGDSGGPLQAPAQYLGEYAPKMVEFGIV
SQGVVTCGQISLPGLYTNVGEYVQWITDTMASNGL*

BS15296.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:10:53
Subject Length Description Subject Range Query Range Score Percent Strand
grass-PA 335 CG5896-PA 1..335 1..335 1786 100 Plus
grass-PB 377 CG5896-PB 43..377 1..335 1786 100 Plus
CG5909-PA 381 CG5909-PA 52..380 20..330 483 33.5 Plus
ea-PA 392 CG4920-PA 72..392 30..332 479 37 Plus
ea-PB 261 CG4920-PB 2..261 82..332 416 38.7 Plus