Clone BS15302 Report

Search the DGRC for BS15302

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:153
Well:2
Vector:pDNR-Dual
Associated Gene/TranscriptCG11300-RA
Protein status:BS15302.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15302.3prime Sequence

504 bp (504 high quality bases) assembled on 2006-10-24

> BS15302.3prime
ATGGTCTAGAAAGCTTTTACAATAGACGACGGTGACGGTGTACACGGCGA
ACCACTCGCCCCTGACCACCACCTCCATTCTGATTACTCTGGTTGGCCTG
ACGCCTCTCGCGGCGGAGCTGACGCCTCAGCCGGCGCAGCCGACGCCTGA
GCCTAATCACTTCCTGGCTGCTGCTGGATCCACTGTCACTGGGCGATGTG
GGCGTAGCTGGTGATGTCGAGGAAGCGGGCGCATCAGGAGTAGCTGGCGA
GGACGGTGTTCCAGTCGCTGGAGTTGGCGAGGTCGGTGTACCAGCAGCTG
GGGATGCTGAAGGTGGTGTTCCAGTCGCTGGGGATGGTGAGGGCGGTGTT
CCAGTCGCTGGAGGTGGCGAGGTTGGGGTTCCAGCCGGTGGAGATGACGC
GGGTGGGGATCCTGCCGCAGGTGGAGAATCGGCGTAGGCAGTTGCTATTA
GGGCCAAAAGCCCAAAGGCGATAACGAATTGGCAACGCATGTCGACTGAT
AACT

BS15302.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:18:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG11300-PA 474 CG11300-RA 1..474 490..17 2370 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:21:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG11300-RA 581 CG11300-RA 35..510 490..15 2380 100 Minus
CG11300-RA 581 CG11300-RA 108..250 387..245 250 79.2 Minus
CG11300-RA 581 CG11300-RA 138..280 417..275 250 79.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:21:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23751949..23752424 490..15 2380 100 Minus
2R 25286936 2R 23752022..23752164 387..245 250 78.3 Minus
2R 25286936 2R 23752052..23752194 417..275 250 78.3 Minus
Blast to na_te.dros performed on 2015-02-04 21:21:25 has no hits.

BS15302.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:22:50 Download gff for BS15302.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11300-PA 1..474 17..490 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:58:14 Download gff for BS15302.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11300-PA 1..474 17..490 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:42:22 Download gff for BS15302.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11300-RA 35..512 11..490 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 00:46:00 Download gff for BS15302.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11300-RA 35..512 11..490 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 00:46:00 Download gff for BS15302.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23751949..23752426 11..490 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:42:22 Download gff for BS15302.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19639472..19639949 11..490 99   Minus

BS15302.5prime Sequence

504 bp (504 high quality bases) assembled on 2006-10-24

> BS15302.5prime
GAAGTTATCCTTCGACATGCGTTGCCAATTCGTTATCGCCTTTGGGCTTT
TGGCCCTAATAGCAACTGCCTACGCCGATTCTCCTCCTGGGGCAGGATCC
CCACCCGCGTCATCTCCACCGGCTGGAACCCCAACCTCGCCACCTCCAGC
GACTGGAACACCGCCCTCACCATCCCCAGCGACTGGAACACCACCTTCAG
CATCCCCAGCTGCTGGTACACCGACCTCGCCAACTCCAGCGACTGGAACA
CCGTCCTCGCCAGCTACTCCTGATGCGCCCGCTTCCTCGACATCACCAGC
TACGCCCACATCGCCCAGTGACAGTGGATCCAGCAGCAGCCAGGAAGTGA
TTAGGCTCAGGCGTCGGCTGCGCCGGCTGAGGCGTCAGCTCCGCCGCGAG
AGGCGTCAGGCCAACCAGAGTAATCAGAATGGAGGTGGTGGTCAGGGGCG
AGTGGTTCGCCGTGTACACCGTCACCGTCGTCTATTGTAAAAGCTTTCTA
GACC

BS15302.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:18:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG11300-PA 474 CG11300-RA 1..474 17..490 2320 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:54:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG11300-RA 581 CG11300-RA 35..510 17..492 2350 99.6 Plus
CG11300-RA 581 CG11300-RA 108..250 120..262 250 79.2 Plus
CG11300-RA 581 CG11300-RA 139..280 91..232 245 79 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:54:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23751949..23752424 17..492 2350 99.6 Plus
2R 25286936 2R 23752022..23752164 120..262 250 78.3 Plus
2R 25286936 2R 23752053..23752194 91..232 245 78.2 Plus
Blast to na_te.dros performed on 2015-02-13 05:54:29 has no hits.

BS15302.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:22:51 Download gff for BS15302.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11300-PA 1..474 17..490 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:58:15 Download gff for BS15302.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11300-PA 1..474 17..490 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:54:16 Download gff for BS15302.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11300-RA 35..512 17..496 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:56:29 Download gff for BS15302.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11300-RA 35..512 17..496 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:56:29 Download gff for BS15302.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23751949..23752426 17..496 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:54:16 Download gff for BS15302.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19639472..19639949 17..496 99   Plus

BS15302.complete Sequence

506 bp assembled on 2006-11-01

GenBank Submission: FJ637912

> BS15302.complete
GAAGTTATCAGTCGACATGCGTTGCCAATTCGTTATCGCCTTTGGGCTTT
TGGCCCTAATAGCAACTGCCTACGCCGATTCTCCACCTGCGGCAGGATCC
CCACCCGCGTCATCTCCACCGGCTGGAACCCCAACCTCGCCACCTCCAGC
GACTGGAACACCGCCCTCACCATCCCCAGCGACTGGAACACCACCTTCAG
CATCCCCAGCTGCTGGTACACCGACCTCGCCAACTCCAGCGACTGGAACA
CCGTCCTCGCCAGCTACTCCTGATGCGCCCGCTTCCTCGACATCACCAGC
TACGCCCACATCGCCCAGTGACAGTGGATCCAGCAGCAGCCAGGAAGTGA
TTAGGCTCAGGCGTCGGCTGCGCCGGCTGAGGCGTCAGCTCCGCCGCGAG
AGGCGTCAGGCCAACCAGAGTAATCAGAATGGAGGTGGTGGTCAGGGGCG
AGTGGTTCGCCGTGTACACCGTCACCGTCGTCTATTGTAAAAGCTTTCTA
GACCAT

BS15302.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:51:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG11300-RA 474 CG11300-PA 1..474 17..490 2370 100 Plus
CG11300-RA 474 CG11300-PA 74..216 120..262 250 78.3 Plus
CG11300-RA 474 CG11300-PA 104..246 90..232 250 78.3 Plus
CG11300-RA 474 CG11300-PA 95..156 201..262 175 85.5 Plus
CG11300-RA 474 CG11300-PA 185..246 111..172 175 85.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:51:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG11300-RA 581 CG11300-RA 35..510 17..492 2380 100 Plus
CG11300-RA 581 CG11300-RA 108..250 120..262 250 78.3 Plus
CG11300-RA 581 CG11300-RA 138..280 90..232 250 78.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:51:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23751949..23752424 17..492 2380 100 Plus
2R 25286936 2R 23752022..23752164 120..262 250 78.3 Plus
2R 25286936 2R 23752052..23752194 90..232 250 78.3 Plus
Blast to na_te.dros performed on 2014-11-27 23:51:41 has no hits.

BS15302.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:32:58 Download gff for BS15302.complete
Subject Subject Range Query Range Percent Splice Strand
CG11300-RA 1..474 17..490 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:05:32 Download gff for BS15302.complete
Subject Subject Range Query Range Percent Splice Strand
CG11300-RA 2..483 14..496 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:40:03 Download gff for BS15302.complete
Subject Subject Range Query Range Percent Splice Strand
CG11300-RA 35..506 17..488 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:32:58 Download gff for BS15302.complete
Subject Subject Range Query Range Percent Splice Strand
CG11300-RA 2..483 14..496 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:09:49 Download gff for BS15302.complete
Subject Subject Range Query Range Percent Splice Strand
CG11300-RA 35..506 17..488 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:09:49 Download gff for BS15302.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23751949..23752420 17..488 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:40:03 Download gff for BS15302.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19639472..19639943 17..488 100   Plus

BS15302.pep Sequence

Translation from 16 to 489

> BS15302.pep
MRCQFVIAFGLLALIATAYADSPPAAGSPPASSPPAGTPTSPPPATGTPP
SPSPATGTPPSASPAAGTPTSPTPATGTPSSPATPDAPASSTSPATPTSP
SDSGSSSSQEVIRLRRRLRRLRRQLRRERRQANQSNQNGGGGQGRVVRRV
HRHRRLL*

BS15302.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:30:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG11300-PA 157 CG11300-PA 1..157 1..157 812 100 Plus
CG34105-PA 157 CG34105-PA 1..155 1..152 242 38.1 Plus
CG12491-PA 157 CG12491-PA 1..155 1..152 242 38.1 Plus
CG13560-PB 181 CG13560-PB 1..174 1..137 198 35.4 Plus
CG13560-PA 181 CG13560-PA 1..174 1..137 198 35.4 Plus