Clone Sequence Records
BS15307.3prime Sequence
390 bp (390 high quality bases) assembled on 2006-10-24
> BS15307.3prime
ATGGTCTAGAAAGCTTCTACGAAGTGCATGGGTTTACTTTAGTAGTATGG
ATTTCCATTGCCCCGCGACTGATAAGCTTGACCTTCTGGGCCGCCAAGGC
CGGGCAATGTATTATAGTAGTCGCCTTGCCCACTGCTCCGCTGTAAAGCC
CGTTGCGAGAGTTCATCTCACGAAGCATTTTTGTGTATCGCAAGGGACTG
CGATAGCCAGGACCACCAAGCGATGCAGATGCACCATTAAAATTTGAAGA
ACCTTGTCCGCAATTACTCTGCTGCTGGCTATATCCATGGCCACTGCTCG
TTTGGTTGTACAGCATTTCAAAGCCCTCGCCACCTTGGCTATAACCATCG
TATTGCATACCATTTCCGTATTCCATGTCGACTGATAACT
BS15307.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:18:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15219-PB | 360 | CG15219-RB | 1..360 | 376..17 | 1800 | 100 | Minus |
CG15219-PA | 354 | CG15219-RA | 1..234 | 376..143 | 1170 | 100 | Minus |
CG15219-PA | 354 | CG15219-RA | 250..354 | 143..39 | 525 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:00:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15219-RC | 505 | CG15219-RC | 111..473 | 377..15 | 1815 | 100 | Minus |
CG15219-RA | 521 | CG15219-RA | 111..489 | 377..15 | 1645 | 95.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:00:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 22105116..22105299 | 144..327 | 920 | 100 | Plus |
2L | 23513712 | 2L | 22104923..22105051 | 15..143 | 645 | 100 | Plus |
2L | 23513712 | 2L | 22105350..22105402 | 325..377 | 265 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:00:42 has no hits.
BS15307.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:22:58 Download gff for
BS15307.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15219-PB | 1..360 | 17..376 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:58:26 Download gff for
BS15307.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15219-PB | 1..360 | 17..376 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:25:09 Download gff for
BS15307.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15219-RC | 101..476 | 11..390 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:05:04 Download gff for
BS15307.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15219-RC | 101..476 | 11..390 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:05:04 Download gff for
BS15307.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22104920..22105051 | 11..143 | 98 | <- | Plus |
2L | 22105116..22105297 | 144..325 | 100 | <- | Plus |
2L | 22105351..22105411 | 326..390 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:25:09 Download gff for
BS15307.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22104920..22105051 | 11..143 | 98 | <- | Plus |
arm_2L | 22105116..22105297 | 144..325 | 100 | <- | Plus |
arm_2L | 22105351..22105411 | 326..390 | 92 | | Plus |
BS15307.5prime Sequence
390 bp (390 high quality bases) assembled on 2006-10-24
> BS15307.5prime
GAAGTTACCCTTCGACATGGAATACGGAAATGGTATGCAATACGATGGTT
ATAGCCAAGGTGGCGAGGGCTTTGAAATGCTGTCCAACCAAACGAGCAGT
GGCCATGGATATAGCCAGCAGCAGAGTAATTGCGGACAAGGTTCTTCAAA
TTTTAATGGTGCATCTGCATCGCTTGGTGGTCCTGGCTATCGCAGTCCCT
TGCGATACACAAAAATGCTTCGTGAGATGAACTCTCGCAACGGGCTTTAC
AGCGGAGCAGTGGGCAAGGCGACTACTATAATACATTGCCCGGCCTTGGC
GGCCCAGAAGGTCAAGCTTATCAGTCGCGGGGCAATGGAAATCCATACTA
CTAAAGTAAACCCATGCACTTCGTAGAAGCTTTCTAGACC
BS15307.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:18:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15219-PB | 360 | CG15219-RB | 1..360 | 17..376 | 1775 | 99.7 | Plus |
CG15219-PA | 354 | CG15219-RA | 1..234 | 17..250 | 1145 | 99.5 | Plus |
CG15219-PA | 354 | CG15219-RA | 250..354 | 250..354 | 525 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:07:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15219-RC | 505 | CG15219-RC | 111..473 | 16..378 | 1800 | 99.7 | Plus |
CG15219-RA | 521 | CG15219-RA | 111..489 | 16..378 | 1630 | 95.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:07:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 22105116..22105299 | 249..66 | 905 | 99.5 | Minus |
2L | 23513712 | 2L | 22104923..22105051 | 378..250 | 645 | 100 | Minus |
2L | 23513712 | 2L | 22105350..22105402 | 68..16 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:07:19 has no hits.
BS15307.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:22:59 Download gff for
BS15307.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15219-PB | 1..360 | 17..376 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:58:27 Download gff for
BS15307.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15219-PB | 1..360 | 17..376 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:24:39 Download gff for
BS15307.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15219-RC | 105..476 | 11..382 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:42:47 Download gff for
BS15307.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15219-RC | 105..476 | 11..382 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:42:47 Download gff for
BS15307.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22104920..22105051 | 250..382 | 98 | <- | Minus |
2L | 22105116..22105297 | 68..249 | 99 | <- | Minus |
2L | 22105351..22105408 | 11..67 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:24:39 Download gff for
BS15307.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22104920..22105051 | 250..382 | 98 | <- | Minus |
arm_2L | 22105116..22105297 | 68..249 | 99 | <- | Minus |
arm_2L | 22105351..22105408 | 11..67 | 96 | | Minus |
BS15307.complete Sequence
392 bp assembled on 2006-11-01
GenBank Submission: KX800344
> BS15307.complete
GAAGTTATCAGTCGACATGGAATACGGAAATGGTATGCAATACGATGGTT
ATAGCCAAGGTGGCGAGGGCTTTGAAATGCTGTACAACCAAACGAGCAGT
GGCCATGGATATAGCCAGCAGCAGAGTAATTGCGGACAAGGTTCTTCAAA
TTTTAATGGTGCATCTGCATCGCTTGGTGGTCCTGGCTATCGCAGTCCCT
TGCGATACACAAAAATGCTTCGTGAGATGAACTCTCGCAACGGGCTTTAC
AGCGGAGCAGTGGGCAAGGCGACTACTATAATACATTGCCCGGCCTTGGC
GGCCCAGAAGGTCAAGCTTATCAGTCGCGGGGCAATGGAAATCCATACTA
CTAAAGTAAACCCATGCACTTCGTAGAAGCTTTCTAGACCAT
BS15307.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:16:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15219-RC | 360 | CG15219-PC | 1..360 | 17..376 | 1800 | 100 | Plus |
CG15219-RA | 354 | CG15219-PA | 1..354 | 17..354 | 1495 | 95.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:16:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15219-RC | 505 | CG15219-RC | 111..473 | 16..378 | 1815 | 100 | Plus |
CG15219-RA | 521 | CG15219-RA | 111..489 | 16..378 | 1620 | 95.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:16:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 22105116..22105299 | 249..66 | 920 | 100 | Minus |
2L | 23513712 | 2L | 22104923..22105051 | 378..250 | 645 | 100 | Minus |
2L | 23513712 | 2L | 22105350..22105402 | 68..16 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:16:35 has no hits.
BS15307.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:32:59 Download gff for
BS15307.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15219-RA | 1..233 | 17..249 | 100 | <- | Plus |
CG15219-RA | 248..354 | 250..354 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:05:33 Download gff for
BS15307.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15219-RA | 94..338 | 2..249 | 97 | <- | Plus |
CG15219-RA | 353..486 | 250..382 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:41 Download gff for
BS15307.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15219-RC | 112..471 | 17..376 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:32:59 Download gff for
BS15307.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15219-RA | 94..338 | 2..249 | 97 | <- | Plus |
CG15219-RA | 353..486 | 250..382 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:14:55 Download gff for
BS15307.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15219-RC | 112..471 | 17..376 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:14:55 Download gff for
BS15307.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22104925..22105051 | 250..376 | 100 | <- | Minus |
2L | 22105116..22105297 | 68..249 | 100 | <- | Minus |
2L | 22105351..22105401 | 17..67 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:41 Download gff for
BS15307.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22104925..22105051 | 250..376 | 100 | <- | Minus |
arm_2L | 22105116..22105297 | 68..249 | 100 | <- | Minus |
arm_2L | 22105351..22105401 | 17..67 | 100 | | Minus |
BS15307.pep Sequence
Translation from 16 to 375
> BS15307.pep
MEYGNGMQYDGYSQGGEGFEMLYNQTSSGHGYSQQQSNCGQGSSNFNGAS
ASLGGPGYRSPLRYTKMLREMNSRNGLYSGAVGKATTIIHCPALAAQKVK
LISRGAMEIHTTKVNPCTS*
BS15307.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:30:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15219-PC | 119 | CG15219-PC | 1..119 | 1..119 | 633 | 100 | Plus |
CG15219-PA | 117 | CG15219-PA | 1..79 | 1..79 | 428 | 100 | Plus |