Clone BS15309 Report

Search the DGRC for BS15309

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:153
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptTsp29Fb-RA
Protein status:BS15309.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15309.3prime Sequence

707 bp (645 high quality bases) assembled on 2006-10-24

> BS15309.3prime
ATGGTCTAGAAAGCTTTTAGTTAACGCTGGGGCTCTGGGGCGTGTAGGTG
TAGGGTTCGTGGGAGCCCTGCTCTCCGTTATCCAACTGCTGATAGCCGGT
GACAGCGGAATTCTGGGGCGGTGCCATCTTTCCGCCGGAGATGAGGACGC
CGAGGCTCTGCTGCAGCTGCCAGCGGCGTGCCTCGCGGATGGACTTGTTG
CGGCGCAGCGTCTTGGCCAGCATAAAGGCGCAGAGCACGCCGAGAAGCTG
GACAAAGGCCACAGTGGTGGCTCCGGTGGCAATCAGCATGGCGCTCTGCG
ACACAATGAAGTTCATCTTGCGGAAGCAGCCGTAGTCGTAGGTCTCCATA
CAGGTCATCTGGGTGGAGTCGTTCAGACTTGTTGGTTGGTTGCCGCAGCA
TGAGTTGGGCACCACCACGTCATCCACTCCCAGAGTGAAGTTCACATTGG
CGGATAGGTAGTCCTTCCAGTCCTCCGGCTCATTAACTCCGCAACACTCT
AGCATAGATTGCATGAAGTCCACTCCAGATTCCACGTAGGGATCGTGTTC
ATACTCAGCCAGGGCCTGGTTCATGGTTCGGATCAGCATGCCCCTCACCT
GCGATTGCATCACAAAGGCGGCGATGGCGGCAGAAACCTCAAGGATGAAC
ACCAGGAAAAGGCACACTCCGTACAGATTAATGACCATCACACTCTCCTT
GACGGCT

BS15309.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:18:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG9496-PB 927 Tsp29Fb-RB 237..927 707..17 3430 99.8 Minus
CG9496-PA 927 Tsp29Fb-RA 237..927 707..17 3430 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:33:43
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp29Fb-RC 1230 CG9496-RC 398..1088 707..17 3440 99.9 Minus
Tsp29Fb-RA 1159 CG9496-RA 327..1017 707..17 3440 99.9 Minus
Tsp29Fb-RB 1116 CG9496-RB 284..974 707..17 3440 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:33:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8939115..8939601 503..17 2435 100 Minus
2L 23513712 2L 8938856..8939027 674..503 845 99.4 Minus
Blast to na_te.dros performed on 2015-02-11 03:33:40 has no hits.

BS15309.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:23:02 Download gff for BS15309.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9496-PB 237..927 17..707 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:58:32 Download gff for BS15309.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9496-PA 237..927 17..707 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:06:15 Download gff for BS15309.3prime
Subject Subject Range Query Range Percent Splice Strand
Tsp29Fb-RB 284..976 13..707 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:42:00 Download gff for BS15309.3prime
Subject Subject Range Query Range Percent Splice Strand
Tsp29Fb-RB 284..976 13..707 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:42:00 Download gff for BS15309.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8938724..8938757 674..707 100 -> Minus
2L 8938857..8939027 503..673 99 -> Minus
2L 8939116..8939603 13..502 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:06:15 Download gff for BS15309.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8938724..8938757 674..707 100 -> Minus
arm_2L 8938857..8939027 503..673 99 -> Minus
arm_2L 8939116..8939603 13..502 99   Minus

BS15309.5prime Sequence

754 bp (659 high quality bases) assembled on 2006-10-24

> BS15309.5prime
GAAGTTATCAGTCGACATGTCGAATAGGGAACTGCAACTGAATTCGGGCA
TGAAGTGCGCCAAGTACATGCTCATCATCGTGAGCTTCATGTTTGCGCTG
ACCGCCATCCTCCTGATTATGGTTGGAACTACGATCCAGACCATCTTCGG
CGACTTCAGCCTCTTCATCGATGGACACTTCTCGTCGCCACCGGCACTCC
TCATTGCCATCGGATTCATTCTGATCGCAGTGGCCGCACTGGGGGCCTAT
GGAGCCGTCAAGGAGAGTGTGATGGTCATTAATCTGTACGGAGTGTGCCT
TTTCCTGGTGTTCATCCTCGAGGTTTCTGCCGCCATCGCCGCCTTTGTGA
TGCAATCGCAGGTGAGGGGCATGCTGATCCGAACCATGAACCAGGCCCTG
GCTGAGTATGAACACGATCCCTACGTGGAATCTGGAGTGGACTTCATGCA
ATCTATGCTAGAGTGTTGCGGAGTTAATGAGCCGGAGGACTGGAAGGACT
ACCTATCCGCCAATGTGAACTTCACTCTGGGAGTGGATGACGTGGTGGTG
CCCAACTCATGCTGCGGCAACCAACCAACAAGTCTGAACGACTCCACCCA
GATGACCTGTATGGAGACCTACGACTACGGCTGCTTCCGCAAGATGAACT
TCATTGTGTCGCAGAGCGCCATGCTGATTGCCACCGGAGCCACCACTGTG
GCCTTTGTCCAGCTTCTCGGCGTGCTCTGCGCCTTTATGCTGGCCAAGAC
GCTG

BS15309.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:18:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG9496-PB 927 Tsp29Fb-RB 1..738 17..754 3690 100 Plus
CG9496-PA 927 Tsp29Fb-RA 1..738 17..754 3690 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:57:20
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp29Fb-RC 1230 CG9496-RC 162..899 17..754 3690 100 Plus
Tsp29Fb-RA 1159 CG9496-RA 91..828 17..754 3690 100 Plus
Tsp29Fb-RB 1116 CG9496-RB 48..785 17..754 3690 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:57:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8939115..8939412 457..754 1490 100 Plus
2L 23513712 2L 8938568..8938757 97..286 950 100 Plus
2L 23513712 2L 8938856..8939027 286..457 860 100 Plus
2L 23513712 2L 8937551..8937635 17..101 410 98.8 Plus
Blast to na_te.dros performed on 2015-02-12 05:57:17 has no hits.

BS15309.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:23:03 Download gff for BS15309.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9496-PB 1..738 17..754 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:58:33 Download gff for BS15309.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9496-PA 1..738 17..754 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 06:30:39 Download gff for BS15309.5prime
Subject Subject Range Query Range Percent Splice Strand
Tsp29Fb-RB 41..785 9..754 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:55:33 Download gff for BS15309.5prime
Subject Subject Range Query Range Percent Splice Strand
Tsp29Fb-RB 41..785 9..754 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:55:33 Download gff for BS15309.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8938569..8938757 98..286 100 -> Plus
2L 8938857..8939027 287..457 100 -> Plus
2L 8937544..8937631 9..97 96 -> Plus
2L 8939116..8939412 458..754 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 06:30:39 Download gff for BS15309.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8937544..8937631 9..97 96 -> Plus
arm_2L 8938569..8938757 98..286 100 -> Plus
arm_2L 8938857..8939027 287..457 100 -> Plus
arm_2L 8939116..8939412 458..754 100   Plus

BS15309.complete Sequence

959 bp assembled on 2006-11-01

GenBank Submission: FJ637913

> BS15309.complete
GAAGTTATCAGTCGACATGTCGAATAGGGAACTGCAACTGAATTCGGGCA
TGAAGTGCGCCAAGTACATGCTCATCATCGTGAGCTTCATGTTTGCGCTG
ACCGCCATCCTCCTGATTATGGTTGGAACTACGATCCAGACCATCTTCGG
CGACTTCAGCCTCTTCATCGATGGACACTTCTCGTCGCCACCGGCACTCC
TCATTGCCATCGGATTCATTCTGATCGCAGTGGCCGCACTGGGGGCCTAT
GGAGCCGTCAAGGAGAGTGTGATGGTCATTAATCTGTACGGAGTGTGCCT
TTTCCTGGTGTTCATCCTCGAGGTTTCTGCCGCCATCGCCGCCTTTGTGA
TGCAATCGCAGGTGAGGGGCATGCTGATCCGAACCATGAACCAGGCCCTG
GCTGAGTATGAACACGATCCCTACGTGGAATCTGGAGTGGACTTCATGCA
ATCTATGCTAGAGTGTTGCGGAGTTAATGAGCCGGAGGACTGGAAGGACT
ACCTATCCGCCAATGTGAACTTCACTCTGGGAGTGGATGACGTGGTGGTG
CCCAACTCATGCTGCGGCAACCAACCAACAAGTCTGAACGACTCCACCCA
GATGACCTGTATGGAGACCTACGACTACGGCTGCTTCCGCAAGATGAACT
TCATTGTGTCGCAGAGCGCCATGCTGATTGCCACCGGAGCCACCACTGTG
GCCTTTGTCCAGCTTCTCGGCGTGCTCTGCGCCTTTATGCTGGCCAAGAC
GCTGCGCCGCAACAAGTCCATCCGCGAGGCACGCCGCTGGCAGCTGCAGC
AGAGCCTCGGCGTCCTCATCTCCGGCGGAAAGATGGCACCGCCCCAGAAT
TCCGCTGTCACCGGCTATCAGCAGTTGGATAACGGAGAGCAGGGCTCCCA
CGAACCCTACACCTACACGCCCCAGAGCCCCAGCGTTAACTAAAAGCTTT
CTAGACCAT

BS15309.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:19:39
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp29Fb-RC 927 CG9496-PC 1..927 17..943 4635 100 Plus
Tsp29Fb-RA 927 CG9496-PA 1..927 17..943 4635 100 Plus
Tsp29Fb-RB 927 CG9496-PB 1..927 17..943 4635 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:19:40
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp29Fb-RC 1230 CG9496-RC 162..1088 17..943 4635 100 Plus
Tsp29Fb-RA 1159 CG9496-RA 91..1017 17..943 4635 100 Plus
Tsp29Fb-RB 1116 CG9496-RB 48..974 17..943 4635 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:19:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8939115..8939601 457..943 2435 100 Plus
2L 23513712 2L 8938568..8938757 97..286 950 100 Plus
2L 23513712 2L 8938856..8939027 286..457 860 100 Plus
2L 23513712 2L 8937551..8937635 17..101 410 98.8 Plus
Blast to na_te.dros performed on 2014-11-27 15:19:37 has no hits.

BS15309.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:33:00 Download gff for BS15309.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp29Fb-RC 1..927 17..943 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:05:35 Download gff for BS15309.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp29Fb-RC 147..1082 9..947 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:48 Download gff for BS15309.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp29Fb-RB 48..972 17..941 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:33:01 Download gff for BS15309.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp29Fb-RC 147..1082 9..947 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:05:09 Download gff for BS15309.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp29Fb-RB 48..972 17..941 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:05:09 Download gff for BS15309.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8937551..8937631 17..97 100 -> Plus
2L 8938569..8938757 98..286 100 -> Plus
2L 8938857..8939027 287..457 100 -> Plus
2L 8939116..8939599 458..941 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:48 Download gff for BS15309.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8937551..8937631 17..97 100 -> Plus
arm_2L 8938569..8938757 98..286 100 -> Plus
arm_2L 8938857..8939027 287..457 100 -> Plus
arm_2L 8939116..8939599 458..941 100   Plus

BS15309.pep Sequence

Translation from 16 to 942

> BS15309.pep
MSNRELQLNSGMKCAKYMLIIVSFMFALTAILLIMVGTTIQTIFGDFSLF
IDGHFSSPPALLIAIGFILIAVAALGAYGAVKESVMVINLYGVCLFLVFI
LEVSAAIAAFVMQSQVRGMLIRTMNQALAEYEHDPYVESGVDFMQSMLEC
CGVNEPEDWKDYLSANVNFTLGVDDVVVPNSCCGNQPTSLNDSTQMTCME
TYDYGCFRKMNFIVSQSAMLIATGATTVAFVQLLGVLCAFMLAKTLRRNK
SIREARRWQLQQSLGVLISGGKMAPPQNSAVTGYQQLDNGEQGSHEPYTY
TPQSPSVN*

BS15309.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:30:40
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp29Fb-PC 308 CG9496-PC 1..308 1..308 1579 100 Plus
Tsp29Fb-PA 308 CG9496-PA 1..308 1..308 1579 100 Plus
Tsp29Fb-PB 308 CG9496-PB 1..308 1..308 1579 100 Plus
Tsp47F-PB 239 CG9033-PB 5..238 11..251 324 29.3 Plus
Tsp39D-PB 235 CG8666-PB 3..231 9..249 300 26.1 Plus