Clone Sequence Records
BS15309.3prime Sequence
707 bp (645 high quality bases) assembled on 2006-10-24
> BS15309.3prime
ATGGTCTAGAAAGCTTTTAGTTAACGCTGGGGCTCTGGGGCGTGTAGGTG
TAGGGTTCGTGGGAGCCCTGCTCTCCGTTATCCAACTGCTGATAGCCGGT
GACAGCGGAATTCTGGGGCGGTGCCATCTTTCCGCCGGAGATGAGGACGC
CGAGGCTCTGCTGCAGCTGCCAGCGGCGTGCCTCGCGGATGGACTTGTTG
CGGCGCAGCGTCTTGGCCAGCATAAAGGCGCAGAGCACGCCGAGAAGCTG
GACAAAGGCCACAGTGGTGGCTCCGGTGGCAATCAGCATGGCGCTCTGCG
ACACAATGAAGTTCATCTTGCGGAAGCAGCCGTAGTCGTAGGTCTCCATA
CAGGTCATCTGGGTGGAGTCGTTCAGACTTGTTGGTTGGTTGCCGCAGCA
TGAGTTGGGCACCACCACGTCATCCACTCCCAGAGTGAAGTTCACATTGG
CGGATAGGTAGTCCTTCCAGTCCTCCGGCTCATTAACTCCGCAACACTCT
AGCATAGATTGCATGAAGTCCACTCCAGATTCCACGTAGGGATCGTGTTC
ATACTCAGCCAGGGCCTGGTTCATGGTTCGGATCAGCATGCCCCTCACCT
GCGATTGCATCACAAAGGCGGCGATGGCGGCAGAAACCTCAAGGATGAAC
ACCAGGAAAAGGCACACTCCGTACAGATTAATGACCATCACACTCTCCTT
GACGGCT
BS15309.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:18:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9496-PB | 927 | Tsp29Fb-RB | 237..927 | 707..17 | 3430 | 99.8 | Minus |
CG9496-PA | 927 | Tsp29Fb-RA | 237..927 | 707..17 | 3430 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:33:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp29Fb-RC | 1230 | CG9496-RC | 398..1088 | 707..17 | 3440 | 99.9 | Minus |
Tsp29Fb-RA | 1159 | CG9496-RA | 327..1017 | 707..17 | 3440 | 99.9 | Minus |
Tsp29Fb-RB | 1116 | CG9496-RB | 284..974 | 707..17 | 3440 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:33:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8939115..8939601 | 503..17 | 2435 | 100 | Minus |
2L | 23513712 | 2L | 8938856..8939027 | 674..503 | 845 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-11 03:33:40 has no hits.
BS15309.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:23:02 Download gff for
BS15309.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9496-PB | 237..927 | 17..707 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:58:32 Download gff for
BS15309.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9496-PA | 237..927 | 17..707 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:06:15 Download gff for
BS15309.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp29Fb-RB | 284..976 | 13..707 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:42:00 Download gff for
BS15309.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp29Fb-RB | 284..976 | 13..707 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:42:00 Download gff for
BS15309.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8938724..8938757 | 674..707 | 100 | -> | Minus |
2L | 8938857..8939027 | 503..673 | 99 | -> | Minus |
2L | 8939116..8939603 | 13..502 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:06:15 Download gff for
BS15309.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8938724..8938757 | 674..707 | 100 | -> | Minus |
arm_2L | 8938857..8939027 | 503..673 | 99 | -> | Minus |
arm_2L | 8939116..8939603 | 13..502 | 99 | | Minus |
BS15309.5prime Sequence
754 bp (659 high quality bases) assembled on 2006-10-24
> BS15309.5prime
GAAGTTATCAGTCGACATGTCGAATAGGGAACTGCAACTGAATTCGGGCA
TGAAGTGCGCCAAGTACATGCTCATCATCGTGAGCTTCATGTTTGCGCTG
ACCGCCATCCTCCTGATTATGGTTGGAACTACGATCCAGACCATCTTCGG
CGACTTCAGCCTCTTCATCGATGGACACTTCTCGTCGCCACCGGCACTCC
TCATTGCCATCGGATTCATTCTGATCGCAGTGGCCGCACTGGGGGCCTAT
GGAGCCGTCAAGGAGAGTGTGATGGTCATTAATCTGTACGGAGTGTGCCT
TTTCCTGGTGTTCATCCTCGAGGTTTCTGCCGCCATCGCCGCCTTTGTGA
TGCAATCGCAGGTGAGGGGCATGCTGATCCGAACCATGAACCAGGCCCTG
GCTGAGTATGAACACGATCCCTACGTGGAATCTGGAGTGGACTTCATGCA
ATCTATGCTAGAGTGTTGCGGAGTTAATGAGCCGGAGGACTGGAAGGACT
ACCTATCCGCCAATGTGAACTTCACTCTGGGAGTGGATGACGTGGTGGTG
CCCAACTCATGCTGCGGCAACCAACCAACAAGTCTGAACGACTCCACCCA
GATGACCTGTATGGAGACCTACGACTACGGCTGCTTCCGCAAGATGAACT
TCATTGTGTCGCAGAGCGCCATGCTGATTGCCACCGGAGCCACCACTGTG
GCCTTTGTCCAGCTTCTCGGCGTGCTCTGCGCCTTTATGCTGGCCAAGAC
GCTG
BS15309.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:18:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9496-PB | 927 | Tsp29Fb-RB | 1..738 | 17..754 | 3690 | 100 | Plus |
CG9496-PA | 927 | Tsp29Fb-RA | 1..738 | 17..754 | 3690 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:57:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp29Fb-RC | 1230 | CG9496-RC | 162..899 | 17..754 | 3690 | 100 | Plus |
Tsp29Fb-RA | 1159 | CG9496-RA | 91..828 | 17..754 | 3690 | 100 | Plus |
Tsp29Fb-RB | 1116 | CG9496-RB | 48..785 | 17..754 | 3690 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:57:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8939115..8939412 | 457..754 | 1490 | 100 | Plus |
2L | 23513712 | 2L | 8938568..8938757 | 97..286 | 950 | 100 | Plus |
2L | 23513712 | 2L | 8938856..8939027 | 286..457 | 860 | 100 | Plus |
2L | 23513712 | 2L | 8937551..8937635 | 17..101 | 410 | 98.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:57:17 has no hits.
BS15309.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:23:03 Download gff for
BS15309.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9496-PB | 1..738 | 17..754 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:58:33 Download gff for
BS15309.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9496-PA | 1..738 | 17..754 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 06:30:39 Download gff for
BS15309.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp29Fb-RB | 41..785 | 9..754 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:55:33 Download gff for
BS15309.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp29Fb-RB | 41..785 | 9..754 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:55:33 Download gff for
BS15309.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8938569..8938757 | 98..286 | 100 | -> | Plus |
2L | 8938857..8939027 | 287..457 | 100 | -> | Plus |
2L | 8937544..8937631 | 9..97 | 96 | -> | Plus |
2L | 8939116..8939412 | 458..754 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 06:30:39 Download gff for
BS15309.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8937544..8937631 | 9..97 | 96 | -> | Plus |
arm_2L | 8938569..8938757 | 98..286 | 100 | -> | Plus |
arm_2L | 8938857..8939027 | 287..457 | 100 | -> | Plus |
arm_2L | 8939116..8939412 | 458..754 | 100 | | Plus |
BS15309.complete Sequence
959 bp assembled on 2006-11-01
GenBank Submission: FJ637913
> BS15309.complete
GAAGTTATCAGTCGACATGTCGAATAGGGAACTGCAACTGAATTCGGGCA
TGAAGTGCGCCAAGTACATGCTCATCATCGTGAGCTTCATGTTTGCGCTG
ACCGCCATCCTCCTGATTATGGTTGGAACTACGATCCAGACCATCTTCGG
CGACTTCAGCCTCTTCATCGATGGACACTTCTCGTCGCCACCGGCACTCC
TCATTGCCATCGGATTCATTCTGATCGCAGTGGCCGCACTGGGGGCCTAT
GGAGCCGTCAAGGAGAGTGTGATGGTCATTAATCTGTACGGAGTGTGCCT
TTTCCTGGTGTTCATCCTCGAGGTTTCTGCCGCCATCGCCGCCTTTGTGA
TGCAATCGCAGGTGAGGGGCATGCTGATCCGAACCATGAACCAGGCCCTG
GCTGAGTATGAACACGATCCCTACGTGGAATCTGGAGTGGACTTCATGCA
ATCTATGCTAGAGTGTTGCGGAGTTAATGAGCCGGAGGACTGGAAGGACT
ACCTATCCGCCAATGTGAACTTCACTCTGGGAGTGGATGACGTGGTGGTG
CCCAACTCATGCTGCGGCAACCAACCAACAAGTCTGAACGACTCCACCCA
GATGACCTGTATGGAGACCTACGACTACGGCTGCTTCCGCAAGATGAACT
TCATTGTGTCGCAGAGCGCCATGCTGATTGCCACCGGAGCCACCACTGTG
GCCTTTGTCCAGCTTCTCGGCGTGCTCTGCGCCTTTATGCTGGCCAAGAC
GCTGCGCCGCAACAAGTCCATCCGCGAGGCACGCCGCTGGCAGCTGCAGC
AGAGCCTCGGCGTCCTCATCTCCGGCGGAAAGATGGCACCGCCCCAGAAT
TCCGCTGTCACCGGCTATCAGCAGTTGGATAACGGAGAGCAGGGCTCCCA
CGAACCCTACACCTACACGCCCCAGAGCCCCAGCGTTAACTAAAAGCTTT
CTAGACCAT
BS15309.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:19:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp29Fb-RC | 927 | CG9496-PC | 1..927 | 17..943 | 4635 | 100 | Plus |
Tsp29Fb-RA | 927 | CG9496-PA | 1..927 | 17..943 | 4635 | 100 | Plus |
Tsp29Fb-RB | 927 | CG9496-PB | 1..927 | 17..943 | 4635 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:19:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp29Fb-RC | 1230 | CG9496-RC | 162..1088 | 17..943 | 4635 | 100 | Plus |
Tsp29Fb-RA | 1159 | CG9496-RA | 91..1017 | 17..943 | 4635 | 100 | Plus |
Tsp29Fb-RB | 1116 | CG9496-RB | 48..974 | 17..943 | 4635 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:19:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8939115..8939601 | 457..943 | 2435 | 100 | Plus |
2L | 23513712 | 2L | 8938568..8938757 | 97..286 | 950 | 100 | Plus |
2L | 23513712 | 2L | 8938856..8939027 | 286..457 | 860 | 100 | Plus |
2L | 23513712 | 2L | 8937551..8937635 | 17..101 | 410 | 98.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:19:37 has no hits.
BS15309.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:33:00 Download gff for
BS15309.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp29Fb-RC | 1..927 | 17..943 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:05:35 Download gff for
BS15309.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp29Fb-RC | 147..1082 | 9..947 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:48 Download gff for
BS15309.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp29Fb-RB | 48..972 | 17..941 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:33:01 Download gff for
BS15309.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp29Fb-RC | 147..1082 | 9..947 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:05:09 Download gff for
BS15309.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp29Fb-RB | 48..972 | 17..941 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:05:09 Download gff for
BS15309.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8937551..8937631 | 17..97 | 100 | -> | Plus |
2L | 8938569..8938757 | 98..286 | 100 | -> | Plus |
2L | 8938857..8939027 | 287..457 | 100 | -> | Plus |
2L | 8939116..8939599 | 458..941 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:48 Download gff for
BS15309.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8937551..8937631 | 17..97 | 100 | -> | Plus |
arm_2L | 8938569..8938757 | 98..286 | 100 | -> | Plus |
arm_2L | 8938857..8939027 | 287..457 | 100 | -> | Plus |
arm_2L | 8939116..8939599 | 458..941 | 100 | | Plus |
BS15309.pep Sequence
Translation from 16 to 942
> BS15309.pep
MSNRELQLNSGMKCAKYMLIIVSFMFALTAILLIMVGTTIQTIFGDFSLF
IDGHFSSPPALLIAIGFILIAVAALGAYGAVKESVMVINLYGVCLFLVFI
LEVSAAIAAFVMQSQVRGMLIRTMNQALAEYEHDPYVESGVDFMQSMLEC
CGVNEPEDWKDYLSANVNFTLGVDDVVVPNSCCGNQPTSLNDSTQMTCME
TYDYGCFRKMNFIVSQSAMLIATGATTVAFVQLLGVLCAFMLAKTLRRNK
SIREARRWQLQQSLGVLISGGKMAPPQNSAVTGYQQLDNGEQGSHEPYTY
TPQSPSVN*
BS15309.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:30:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp29Fb-PC | 308 | CG9496-PC | 1..308 | 1..308 | 1579 | 100 | Plus |
Tsp29Fb-PA | 308 | CG9496-PA | 1..308 | 1..308 | 1579 | 100 | Plus |
Tsp29Fb-PB | 308 | CG9496-PB | 1..308 | 1..308 | 1579 | 100 | Plus |
Tsp47F-PB | 239 | CG9033-PB | 5..238 | 11..251 | 324 | 29.3 | Plus |
Tsp39D-PB | 235 | CG8666-PB | 3..231 | 9..249 | 300 | 26.1 | Plus |