Clone BS15312 Report

Search the DGRC for BS15312

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:153
Well:12
Vector:pDNR-Dual
Associated Gene/Transcriptdpr19-RA
Protein status:BS15312.pep: full length peptide match
Sequenced Size:1190

Clone Sequence Records

BS15312.complete Sequence

1190 bp assembled on 2009-12-07

GenBank Submission: KX803616

> BS15312.complete
GAAGTTATCAGTCGACATGGAACCGAAAAGATGGCACTTGCATTTATCAT
GTTTTTTGCTACTCCTTAGTTCAACTTTTTCTGATGTCGGGAAGATCACT
TCGTCTCAAAATCATTTTGGTAACACCTTACAAAGTCAATTTAATACGAA
GAACAACACTCGAGTTATTGCACAAAAGGGAGGACTTGCCATTCTGCCCT
GTGTGGTCAAAGTTAACTCCCCAGCCACGGTTTCCTGGATACGTAGAAAG
GACTTCCAGCTCCTGACAGTGGGCCTATCCACCCACAGTAGTGACAAGCG
ATTCTTGGTGGAGCACACGCGGCACATGGGCCACTGGTCCCTGAGAATTA
AGGCAGTTCGGGAGGAAGATCGCGGTTTTTACGAGTGTCAATTGTCTATT
TATCCAACTCAGTCAATAGTTATAGAATTAAAGATTGTCGAAGCGGTAGC
TGAGATTTCTAGTGCACCGGAATTGCATATTGATGAGACTTCTACTCTGC
GACTCGAATGCAAACTGAAGCGAGCTACCGAGAATCCTGCATTTGTTTTT
TGGTACCATGATAGTAAAATGATCAATTACGACTCACAAGGCGGCTTCGT
TGTGACATCGATTGGGCAAAGCAATCCGCAGAGTGGCCAGTTTTACCGTA
GCTCGCCGGCGAACAAATCGCGCGCCACCATGCCCATGGAGTCCAGCAAT
GGGGTGCTCAACAGCCTGCTGGGCAGCTCGGATGCTATCAAGGCACCGGC
CGCCAATGTGCCCTCCTCCACGCCCTATATGACGCAACAGCATCAATCCG
CCTATCTCCTGAATCCCTCGGTCAGTGTGCTTACTGTGAAGCAAGTCAAT
TTCCGTCATGCCGGCAACTATACATGTGCTCCATCAAATGCCCGTCCTGC
CAGCATTACAGTGCATGTTCTAAGGGGTGAGAAAACGGCGGCCATGCAGC
ACGCCAATCGGAGCATTTTGGATACGGAGACCAACGGCAACGGCACCTTC
GGATTGATCACATTGGGTGGACTGAATGGAACTAGCGGCGTAACTCTGGC
CGGGGGAATCCTCTACTTCTCTGGGCTGTTCCTGCTGATGGGCGCGGTGG
TATTCGATCGATTCTCGTTGGCGGCAACTCACAAGGTATTCGTAGCATTT
ATAATAGTCACTATGCATAGCTGAAAGCTTTCTAGACCAT

BS15312.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:49:50
Subject Length Description Subject Range Query Range Score Percent Strand
dpr19-RC 1158 CG13140-PC 1..1158 17..1174 5790 100 Plus
dpr19-RB 1158 CG13140-PB 1..1158 17..1174 5790 100 Plus
dpr19-RA 1158 CG13140-PA 1..1158 17..1174 5790 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:49:51
Subject Length Description Subject Range Query Range Score Percent Strand
dpr19-RC 2162 CG13140-RC 270..1429 17..1176 5800 100 Plus
dpr19-RB 2353 CG13140-RB 461..1620 17..1176 5800 100 Plus
dpr19-RA 2374 CG13140-RA 482..1641 17..1176 5800 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:49:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10378486..10378870 548..932 1895 99.5 Plus
2L 23513712 2L 10378922..10379172 926..1176 1255 100 Plus
2L 23513712 2L 10378010..10378221 229..440 1060 100 Plus
2L 23513712 2L 10377791..10377944 78..231 755 99.4 Plus
2L 23513712 2L 10378287..10378402 440..555 580 100 Plus
2L 23513712 2L 10377322..10377388 17..83 335 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:49:49 has no hits.

BS15312.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:41:55 Download gff for BS15312.complete
Subject Subject Range Query Range Percent Splice Strand
dpr19-RA 468..1624 17..1173 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:59:00 Download gff for BS15312.complete
Subject Subject Range Query Range Percent Splice Strand
dpr19-RA 482..1638 17..1173 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:11:36 Download gff for BS15312.complete
Subject Subject Range Query Range Percent Splice Strand
dpr19-RA 468..1624 17..1173 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:57:49 Download gff for BS15312.complete
Subject Subject Range Query Range Percent Splice Strand
dpr19-RA 482..1638 17..1173 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:57:49 Download gff for BS15312.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10378923..10379169 927..1173 100   Plus
2L 10377797..10377942 84..229 100 -> Plus
2L 10378011..10378221 230..440 100 -> Plus
2L 10378288..10378399 441..552 100 -> Plus
2L 10378491..10378864 553..926 100 -> Plus
2L 10377322..10377388 17..83 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:59:00 Download gff for BS15312.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10378491..10378864 553..926 100 -> Plus
arm_2L 10378923..10379169 927..1173 100   Plus
arm_2L 10377322..10377388 17..83 100 -> Plus
arm_2L 10377797..10377942 84..229 100 -> Plus
arm_2L 10378011..10378221 230..440 100 -> Plus
arm_2L 10378288..10378399 441..552 100 -> Plus

BS15312.3prime Sequence

739 bp (737 high quality bases) assembled on 2006-10-24

> BS15312.3prime
ATGGTCTAGAAAGCTTTCAGCTATGCATAGTGACTATTATAAATGCTACG
AATACCTTGTGAGTTGCCGCCAACGAGAATCGATCGAATACCACCGCGCC
CATCAGCAGGAACAGCCCAGAGAAGTAGAGGATTCCCCCGGCCAGAGTTA
CGCCGCTAGTTCCATTCAGTCCACCCAATGTGATCAATCCGAAGGTGCCG
TTGCCGTTGGTCTCCGTATCCAAAATGCTCCGATTGGCGTGCTGCATGGC
CGCCGTTTTCTCACCCCTTAGAACATGCACTGTAATGCTGGCAGGACGGG
CATTTGATGGAGCACATGTATAGTTGCCGGCATGACGGAAATTGACTTGC
TTCACAGTAAGCACACTGACCGAGGGATTCAGGAGATAGGCGGATTGATG
CTGTTGCGTCATATAGGGCGTGGAGGAGGGCACATTGGCGGCCGGTGCCT
TGATAGCATCCGAGCTGCCCAGCAGGCTGTTGAGCACCCCATTGCTGGAC
TCCATGGGCATGGTGGCGCGCGATTTGTTCGCCGGCGAGCTACGGTAAAA
CTGGCCACTCTGCGGATTGCTTTGCCCAATCGATGTCACAACGAAGCCGC
CTTGTGAGTCGTAATTGATCATTTTACTATCATGGTACCAAAAAACAAAT
GCAGGATTCTCGGTAGCTCGCTTCAGTTTGCATTCGAGTCGCAGAGTAGA
AGTCTCATCAATATGCAATTCCGGTGCACTAGAAATCTC

BS15312.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:18:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG13140-PA 1158 dpr19-RA 436..1158 739..17 3615 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:42:35
Subject Length Description Subject Range Query Range Score Percent Strand
dpr19-RC 2162 CG13140-RC 705..1429 739..15 3625 100 Minus
dpr19-RB 2353 CG13140-RB 896..1620 739..15 3625 100 Minus
dpr19-RA 2374 CG13140-RA 917..1641 739..15 3625 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:42:26
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10378486..10378870 643..259 1895 99.5 Minus
2L 23513712 2L 10378922..10379172 265..15 1255 100 Minus
2L 23513712 2L 10378299..10378402 739..636 520 100 Minus
Blast to na_te.dros performed on 2015-02-11 04:42:33 has no hits.

BS15312.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:23:08 Download gff for BS15312.3prime
Subject Subject Range Query Range Percent Splice Strand
dpr19-PA 436..1158 17..739 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:58:41 Download gff for BS15312.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13140-PA 436..1158 17..739 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:39:05 Download gff for BS15312.3prime
Subject Subject Range Query Range Percent Splice Strand
dpr19-RA 917..1647 7..739 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:18:05 Download gff for BS15312.3prime
Subject Subject Range Query Range Percent Splice Strand
dpr19-RA 917..1647 7..739 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:18:05 Download gff for BS15312.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10378491..10378864 265..638 100 -> Minus
2L 10378923..10379178 7..264 98   Minus
2L 10378299..10378399 639..739 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:39:05 Download gff for BS15312.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10378299..10378399 639..739 100 -> Minus
arm_2L 10378491..10378864 265..638 100 -> Minus
arm_2L 10378923..10379178 7..264 98   Minus

BS15312.5prime Sequence

755 bp (746 high quality bases) assembled on 2006-10-24

> BS15312.5prime
GAAGTTATCTGTCGACATGGAACCGAAAAGATGGCACTTGCATTTATCAT
GTTTTTTGCTACTCCTTAGTTCAACTTTTTCTGATGTCGGGAAGATCACT
TCGTCTCAAAATCATTTTGGTAACACCTTACAAAGTCAATTTAATACGAA
GAACAACACTCGAGTTATTGCACAAAAGGGAGGACTTGCCATTCTGCCCT
GTGTGGTCAAAGTTAACTCCCCAGCCACGGTTTCCTGGATACGTAGAAAG
GACTTCCAGCTCCTGACAGTGGGCCTATCCACCCACAGTAGTGACAAGCG
ATTCTTGGTGGAGCACACGCGGCACATGGGCCACTGGTCCCTGAGAATTA
AGGCAGTTCGGGAGGAAGATCGCGGTTTTTACGAGTGTCAATTGTCTATT
TATCCAACTCAGTCAATAGTTATAGAATTAAAGATTGTCGAAGCGGTAGC
TGAGATTTCTAGTGCACCGGAATTGCATATTGATGAGACTTCTACTCTGC
GACTCGAATGCAAACTGAAGCGAGCTACCGAGAATCCTGCATTTGTTTTT
TGGTACCATGATAGTAAAATGATCAATTACGACTCACAAGGCGGCTTCGT
TGTGACATCGATTGGGCAAAGCAATCCCGCAGAGTGGCCAGTTTTACCGT
AACTCGCCGGCGAACAAATCGCGCGCCACCATGCCCATGGAGTCCAGCAA
TGGGGTGCTCAACAGCCTGCTGGGCAGCTCGGATGCTATCAAGGCACCGG
CCGCC

BS15312.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:18:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG13140-PA 1158 dpr19-RA 1..611 17..627 3055 100 Plus
CG13140-PA 1158 dpr19-RA 610..738 627..755 620 99.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:54:20
Subject Length Description Subject Range Query Range Score Percent Strand
dpr19-RC 2162 CG13140-RC 270..1007 17..755 3655 99.7 Plus
dpr19-RB 2353 CG13140-RB 461..1198 17..755 3655 99.7 Plus
dpr19-RA 2374 CG13140-RA 482..1219 17..755 3655 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:54:18
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10378010..10378221 229..440 1060 100 Plus
2L 23513712 2L 10378486..10378692 548..755 960 98.6 Plus
2L 23513712 2L 10377791..10377944 78..231 755 99.4 Plus
2L 23513712 2L 10378287..10378402 440..555 580 100 Plus
2L 23513712 2L 10377322..10377388 17..83 335 100 Plus
Blast to na_te.dros performed 2015-02-13 12:54:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\HeT-A 5691 Dyak\HeT-A YAKHETA 5691bp 3384..3440 67..10 107 67.2 Minus

BS15312.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:23:09 Download gff for BS15312.5prime
Subject Subject Range Query Range Percent Splice Strand
dpr19-PA 1..738 17..755 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:58:42 Download gff for BS15312.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13140-PA 1..738 17..755 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:05:20 Download gff for BS15312.5prime
Subject Subject Range Query Range Percent Splice Strand
dpr19-RA 482..1219 17..755 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:14:34 Download gff for BS15312.5prime
Subject Subject Range Query Range Percent Splice Strand
dpr19-RA 482..1219 17..755 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:14:34 Download gff for BS15312.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10378011..10378221 230..440 100 -> Plus
2L 10378288..10378399 441..552 100 -> Plus
2L 10378491..10378692 553..755 99   Plus
2L 10377322..10377388 17..83 100 -> Plus
2L 10377797..10377942 84..229 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:05:20 Download gff for BS15312.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10377322..10377388 17..83 100 -> Plus
arm_2L 10377797..10377942 84..229 100 -> Plus
arm_2L 10378011..10378221 230..440 100 -> Plus
arm_2L 10378288..10378399 441..552 100 -> Plus
arm_2L 10378491..10378692 553..755 99   Plus

BS15312.pep Sequence

Translation from 16 to 1173

> BS15312.pep
MEPKRWHLHLSCFLLLLSSTFSDVGKITSSQNHFGNTLQSQFNTKNNTRV
IAQKGGLAILPCVVKVNSPATVSWIRRKDFQLLTVGLSTHSSDKRFLVEH
TRHMGHWSLRIKAVREEDRGFYECQLSIYPTQSIVIELKIVEAVAEISSA
PELHIDETSTLRLECKLKRATENPAFVFWYHDSKMINYDSQGGFVVTSIG
QSNPQSGQFYRSSPANKSRATMPMESSNGVLNSLLGSSDAIKAPAANVPS
STPYMTQQHQSAYLLNPSVSVLTVKQVNFRHAGNYTCAPSNARPASITVH
VLRGEKTAAMQHANRSILDTETNGNGTFGLITLGGLNGTSGVTLAGGILY
FSGLFLLMGAVVFDRFSLAATHKVFVAFIIVTMHS*

BS15312.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:14:17
Subject Length Description Subject Range Query Range Score Percent Strand
dpr19-PC 385 CG13140-PC 1..385 1..385 1981 100 Plus
dpr19-PB 385 CG13140-PB 1..385 1..385 1981 100 Plus
dpr19-PA 385 CG13140-PA 1..385 1..385 1981 100 Plus
dpr13-PB 419 CG33996-PB 177..333 42..198 393 47.8 Plus
dpr13-PC 418 CG33996-PC 177..332 42..198 376 47.1 Plus