Clone Sequence Records
BS15312.complete Sequence
1190 bp assembled on 2009-12-07
GenBank Submission: KX803616
> BS15312.complete
GAAGTTATCAGTCGACATGGAACCGAAAAGATGGCACTTGCATTTATCAT
GTTTTTTGCTACTCCTTAGTTCAACTTTTTCTGATGTCGGGAAGATCACT
TCGTCTCAAAATCATTTTGGTAACACCTTACAAAGTCAATTTAATACGAA
GAACAACACTCGAGTTATTGCACAAAAGGGAGGACTTGCCATTCTGCCCT
GTGTGGTCAAAGTTAACTCCCCAGCCACGGTTTCCTGGATACGTAGAAAG
GACTTCCAGCTCCTGACAGTGGGCCTATCCACCCACAGTAGTGACAAGCG
ATTCTTGGTGGAGCACACGCGGCACATGGGCCACTGGTCCCTGAGAATTA
AGGCAGTTCGGGAGGAAGATCGCGGTTTTTACGAGTGTCAATTGTCTATT
TATCCAACTCAGTCAATAGTTATAGAATTAAAGATTGTCGAAGCGGTAGC
TGAGATTTCTAGTGCACCGGAATTGCATATTGATGAGACTTCTACTCTGC
GACTCGAATGCAAACTGAAGCGAGCTACCGAGAATCCTGCATTTGTTTTT
TGGTACCATGATAGTAAAATGATCAATTACGACTCACAAGGCGGCTTCGT
TGTGACATCGATTGGGCAAAGCAATCCGCAGAGTGGCCAGTTTTACCGTA
GCTCGCCGGCGAACAAATCGCGCGCCACCATGCCCATGGAGTCCAGCAAT
GGGGTGCTCAACAGCCTGCTGGGCAGCTCGGATGCTATCAAGGCACCGGC
CGCCAATGTGCCCTCCTCCACGCCCTATATGACGCAACAGCATCAATCCG
CCTATCTCCTGAATCCCTCGGTCAGTGTGCTTACTGTGAAGCAAGTCAAT
TTCCGTCATGCCGGCAACTATACATGTGCTCCATCAAATGCCCGTCCTGC
CAGCATTACAGTGCATGTTCTAAGGGGTGAGAAAACGGCGGCCATGCAGC
ACGCCAATCGGAGCATTTTGGATACGGAGACCAACGGCAACGGCACCTTC
GGATTGATCACATTGGGTGGACTGAATGGAACTAGCGGCGTAACTCTGGC
CGGGGGAATCCTCTACTTCTCTGGGCTGTTCCTGCTGATGGGCGCGGTGG
TATTCGATCGATTCTCGTTGGCGGCAACTCACAAGGTATTCGTAGCATTT
ATAATAGTCACTATGCATAGCTGAAAGCTTTCTAGACCAT
BS15312.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:49:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr19-RC | 1158 | CG13140-PC | 1..1158 | 17..1174 | 5790 | 100 | Plus |
dpr19-RB | 1158 | CG13140-PB | 1..1158 | 17..1174 | 5790 | 100 | Plus |
dpr19-RA | 1158 | CG13140-PA | 1..1158 | 17..1174 | 5790 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:49:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr19-RC | 2162 | CG13140-RC | 270..1429 | 17..1176 | 5800 | 100 | Plus |
dpr19-RB | 2353 | CG13140-RB | 461..1620 | 17..1176 | 5800 | 100 | Plus |
dpr19-RA | 2374 | CG13140-RA | 482..1641 | 17..1176 | 5800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:49:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10378486..10378870 | 548..932 | 1895 | 99.5 | Plus |
2L | 23513712 | 2L | 10378922..10379172 | 926..1176 | 1255 | 100 | Plus |
2L | 23513712 | 2L | 10378010..10378221 | 229..440 | 1060 | 100 | Plus |
2L | 23513712 | 2L | 10377791..10377944 | 78..231 | 755 | 99.4 | Plus |
2L | 23513712 | 2L | 10378287..10378402 | 440..555 | 580 | 100 | Plus |
2L | 23513712 | 2L | 10377322..10377388 | 17..83 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:49:49 has no hits.
BS15312.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:41:55 Download gff for
BS15312.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr19-RA | 468..1624 | 17..1173 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:59:00 Download gff for
BS15312.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr19-RA | 482..1638 | 17..1173 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:11:36 Download gff for
BS15312.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr19-RA | 468..1624 | 17..1173 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:57:49 Download gff for
BS15312.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr19-RA | 482..1638 | 17..1173 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:57:49 Download gff for
BS15312.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10378923..10379169 | 927..1173 | 100 | | Plus |
2L | 10377797..10377942 | 84..229 | 100 | -> | Plus |
2L | 10378011..10378221 | 230..440 | 100 | -> | Plus |
2L | 10378288..10378399 | 441..552 | 100 | -> | Plus |
2L | 10378491..10378864 | 553..926 | 100 | -> | Plus |
2L | 10377322..10377388 | 17..83 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:59:00 Download gff for
BS15312.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10378491..10378864 | 553..926 | 100 | -> | Plus |
arm_2L | 10378923..10379169 | 927..1173 | 100 | | Plus |
arm_2L | 10377322..10377388 | 17..83 | 100 | -> | Plus |
arm_2L | 10377797..10377942 | 84..229 | 100 | -> | Plus |
arm_2L | 10378011..10378221 | 230..440 | 100 | -> | Plus |
arm_2L | 10378288..10378399 | 441..552 | 100 | -> | Plus |
BS15312.3prime Sequence
739 bp (737 high quality bases) assembled on 2006-10-24
> BS15312.3prime
ATGGTCTAGAAAGCTTTCAGCTATGCATAGTGACTATTATAAATGCTACG
AATACCTTGTGAGTTGCCGCCAACGAGAATCGATCGAATACCACCGCGCC
CATCAGCAGGAACAGCCCAGAGAAGTAGAGGATTCCCCCGGCCAGAGTTA
CGCCGCTAGTTCCATTCAGTCCACCCAATGTGATCAATCCGAAGGTGCCG
TTGCCGTTGGTCTCCGTATCCAAAATGCTCCGATTGGCGTGCTGCATGGC
CGCCGTTTTCTCACCCCTTAGAACATGCACTGTAATGCTGGCAGGACGGG
CATTTGATGGAGCACATGTATAGTTGCCGGCATGACGGAAATTGACTTGC
TTCACAGTAAGCACACTGACCGAGGGATTCAGGAGATAGGCGGATTGATG
CTGTTGCGTCATATAGGGCGTGGAGGAGGGCACATTGGCGGCCGGTGCCT
TGATAGCATCCGAGCTGCCCAGCAGGCTGTTGAGCACCCCATTGCTGGAC
TCCATGGGCATGGTGGCGCGCGATTTGTTCGCCGGCGAGCTACGGTAAAA
CTGGCCACTCTGCGGATTGCTTTGCCCAATCGATGTCACAACGAAGCCGC
CTTGTGAGTCGTAATTGATCATTTTACTATCATGGTACCAAAAAACAAAT
GCAGGATTCTCGGTAGCTCGCTTCAGTTTGCATTCGAGTCGCAGAGTAGA
AGTCTCATCAATATGCAATTCCGGTGCACTAGAAATCTC
BS15312.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:18:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13140-PA | 1158 | dpr19-RA | 436..1158 | 739..17 | 3615 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:42:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr19-RC | 2162 | CG13140-RC | 705..1429 | 739..15 | 3625 | 100 | Minus |
dpr19-RB | 2353 | CG13140-RB | 896..1620 | 739..15 | 3625 | 100 | Minus |
dpr19-RA | 2374 | CG13140-RA | 917..1641 | 739..15 | 3625 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:42:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10378486..10378870 | 643..259 | 1895 | 99.5 | Minus |
2L | 23513712 | 2L | 10378922..10379172 | 265..15 | 1255 | 100 | Minus |
2L | 23513712 | 2L | 10378299..10378402 | 739..636 | 520 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:42:33 has no hits.
BS15312.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:23:08 Download gff for
BS15312.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr19-PA | 436..1158 | 17..739 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:58:41 Download gff for
BS15312.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13140-PA | 436..1158 | 17..739 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:39:05 Download gff for
BS15312.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr19-RA | 917..1647 | 7..739 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:18:05 Download gff for
BS15312.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr19-RA | 917..1647 | 7..739 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:18:05 Download gff for
BS15312.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10378491..10378864 | 265..638 | 100 | -> | Minus |
2L | 10378923..10379178 | 7..264 | 98 | | Minus |
2L | 10378299..10378399 | 639..739 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:39:05 Download gff for
BS15312.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10378299..10378399 | 639..739 | 100 | -> | Minus |
arm_2L | 10378491..10378864 | 265..638 | 100 | -> | Minus |
arm_2L | 10378923..10379178 | 7..264 | 98 | | Minus |
BS15312.5prime Sequence
755 bp (746 high quality bases) assembled on 2006-10-24
> BS15312.5prime
GAAGTTATCTGTCGACATGGAACCGAAAAGATGGCACTTGCATTTATCAT
GTTTTTTGCTACTCCTTAGTTCAACTTTTTCTGATGTCGGGAAGATCACT
TCGTCTCAAAATCATTTTGGTAACACCTTACAAAGTCAATTTAATACGAA
GAACAACACTCGAGTTATTGCACAAAAGGGAGGACTTGCCATTCTGCCCT
GTGTGGTCAAAGTTAACTCCCCAGCCACGGTTTCCTGGATACGTAGAAAG
GACTTCCAGCTCCTGACAGTGGGCCTATCCACCCACAGTAGTGACAAGCG
ATTCTTGGTGGAGCACACGCGGCACATGGGCCACTGGTCCCTGAGAATTA
AGGCAGTTCGGGAGGAAGATCGCGGTTTTTACGAGTGTCAATTGTCTATT
TATCCAACTCAGTCAATAGTTATAGAATTAAAGATTGTCGAAGCGGTAGC
TGAGATTTCTAGTGCACCGGAATTGCATATTGATGAGACTTCTACTCTGC
GACTCGAATGCAAACTGAAGCGAGCTACCGAGAATCCTGCATTTGTTTTT
TGGTACCATGATAGTAAAATGATCAATTACGACTCACAAGGCGGCTTCGT
TGTGACATCGATTGGGCAAAGCAATCCCGCAGAGTGGCCAGTTTTACCGT
AACTCGCCGGCGAACAAATCGCGCGCCACCATGCCCATGGAGTCCAGCAA
TGGGGTGCTCAACAGCCTGCTGGGCAGCTCGGATGCTATCAAGGCACCGG
CCGCC
BS15312.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:18:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13140-PA | 1158 | dpr19-RA | 1..611 | 17..627 | 3055 | 100 | Plus |
CG13140-PA | 1158 | dpr19-RA | 610..738 | 627..755 | 620 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:54:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr19-RC | 2162 | CG13140-RC | 270..1007 | 17..755 | 3655 | 99.7 | Plus |
dpr19-RB | 2353 | CG13140-RB | 461..1198 | 17..755 | 3655 | 99.7 | Plus |
dpr19-RA | 2374 | CG13140-RA | 482..1219 | 17..755 | 3655 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:54:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10378010..10378221 | 229..440 | 1060 | 100 | Plus |
2L | 23513712 | 2L | 10378486..10378692 | 548..755 | 960 | 98.6 | Plus |
2L | 23513712 | 2L | 10377791..10377944 | 78..231 | 755 | 99.4 | Plus |
2L | 23513712 | 2L | 10378287..10378402 | 440..555 | 580 | 100 | Plus |
2L | 23513712 | 2L | 10377322..10377388 | 17..83 | 335 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 12:54:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\HeT-A | 5691 | Dyak\HeT-A YAKHETA 5691bp | 3384..3440 | 67..10 | 107 | 67.2 | Minus |
BS15312.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:23:09 Download gff for
BS15312.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr19-PA | 1..738 | 17..755 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:58:42 Download gff for
BS15312.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13140-PA | 1..738 | 17..755 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:05:20 Download gff for
BS15312.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr19-RA | 482..1219 | 17..755 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:14:34 Download gff for
BS15312.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr19-RA | 482..1219 | 17..755 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:14:34 Download gff for
BS15312.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10378011..10378221 | 230..440 | 100 | -> | Plus |
2L | 10378288..10378399 | 441..552 | 100 | -> | Plus |
2L | 10378491..10378692 | 553..755 | 99 | | Plus |
2L | 10377322..10377388 | 17..83 | 100 | -> | Plus |
2L | 10377797..10377942 | 84..229 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:05:20 Download gff for
BS15312.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10377322..10377388 | 17..83 | 100 | -> | Plus |
arm_2L | 10377797..10377942 | 84..229 | 100 | -> | Plus |
arm_2L | 10378011..10378221 | 230..440 | 100 | -> | Plus |
arm_2L | 10378288..10378399 | 441..552 | 100 | -> | Plus |
arm_2L | 10378491..10378692 | 553..755 | 99 | | Plus |
BS15312.pep Sequence
Translation from 16 to 1173
> BS15312.pep
MEPKRWHLHLSCFLLLLSSTFSDVGKITSSQNHFGNTLQSQFNTKNNTRV
IAQKGGLAILPCVVKVNSPATVSWIRRKDFQLLTVGLSTHSSDKRFLVEH
TRHMGHWSLRIKAVREEDRGFYECQLSIYPTQSIVIELKIVEAVAEISSA
PELHIDETSTLRLECKLKRATENPAFVFWYHDSKMINYDSQGGFVVTSIG
QSNPQSGQFYRSSPANKSRATMPMESSNGVLNSLLGSSDAIKAPAANVPS
STPYMTQQHQSAYLLNPSVSVLTVKQVNFRHAGNYTCAPSNARPASITVH
VLRGEKTAAMQHANRSILDTETNGNGTFGLITLGGLNGTSGVTLAGGILY
FSGLFLLMGAVVFDRFSLAATHKVFVAFIIVTMHS*
BS15312.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:14:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr19-PC | 385 | CG13140-PC | 1..385 | 1..385 | 1981 | 100 | Plus |
dpr19-PB | 385 | CG13140-PB | 1..385 | 1..385 | 1981 | 100 | Plus |
dpr19-PA | 385 | CG13140-PA | 1..385 | 1..385 | 1981 | 100 | Plus |
dpr13-PB | 419 | CG33996-PB | 177..333 | 42..198 | 393 | 47.8 | Plus |
dpr13-PC | 418 | CG33996-PC | 177..332 | 42..198 | 376 | 47.1 | Plus |