Clone Sequence Records
BS15313.3prime Sequence
655 bp (655 high quality bases) assembled on 2006-10-24
> BS15313.3prime
ATGGTCTAGAAAGCTTTTACACCACTGGTGGTTGGCCGTTGACCAAAAAT
ACGGTGGTGGTGGTGGAAGTGGTGGTTGTGGCCACGTTCGCCTCGTAAAC
CGGCGGTGGTTCGTTAATTCCAACCGCCAAATTGGGATTGCTCGCTTCCA
AGCTGGTGGCTATGGTCAGTGTGCTGTCCTGCTTTCGCTCGCTAAAAGCG
GCCTCGTCGTAGCTGGGCGGCAAATCCAAGGTCTTGGGCAGGACACTAAC
TTCGTTCTGGCTGTTTGAGCACACGTTTCCGACTCCTCCGGAGCCGCCGT
TGCAATTGTTCGTCACATTGATCTCCATTTGGCGACGGGCTCGTTGTCTC
TGCTGGGCCAGATTCCGCACATTGGTCTCTCGCTTGCGTTTGGCGCTCAT
AATCATGGCCAGAGGAAAGGCGATGACGAAGAGGAAGACCAGCACAATGT
AAATGACATAGCTGGGATAAAATAACATGTATGGACCATCGTAGCCGCCA
CCGTTGATCCAAATTGTGACGGAAGTGGTGTTAACGTATTCCCAATCCGA
TGTCGTACTTTCAGTGGTGTTAAGTGTTCCGTTGGCCACCGTGGTGGAGT
CAAAAGGGGTGCTGACCGTCGCGTTTATGGCAGGGGCCATGTCGACTGAT
AACTT
BS15313.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:18:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4741-PA | 624 | CG4741-RA | 1..624 | 640..17 | 3120 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:38:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4741-RA | 881 | CG4741-RA | 97..722 | 642..17 | 3130 | 100 | Minus |
CG4741-RB | 854 | CG4741-RB | 367..695 | 345..17 | 1630 | 99.7 | Minus |
CG4741-RC | 880 | CG4741-RC | 437..761 | 341..17 | 1625 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:38:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24610960..24611284 | 17..341 | 1625 | 100 | Plus |
2R | 25286936 | 2R | 24614033..24614277 | 398..642 | 1225 | 100 | Plus |
2R | 25286936 | 2R | 24613914..24613972 | 340..398 | 295 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:38:33 has no hits.
BS15313.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:23:11 Download gff for
BS15313.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4741-PA | 1..624 | 17..640 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:58:44 Download gff for
BS15313.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4741-PA | 1..624 | 17..640 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:30:55 Download gff for
BS15313.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4741-RA | 94..731 | 10..645 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:25:32 Download gff for
BS15313.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4741-RA | 94..731 | 10..645 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:25:32 Download gff for
BS15313.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24610951..24611282 | 10..339 | 99 | <- | Plus |
2R | 24613914..24613971 | 340..397 | 100 | <- | Plus |
2R | 24614033..24614280 | 398..645 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:30:55 Download gff for
BS15313.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20498474..20498805 | 10..339 | 99 | <- | Plus |
arm_2R | 20501437..20501494 | 340..397 | 100 | <- | Plus |
arm_2R | 20501556..20501803 | 398..645 | 99 | | Plus |
BS15313.5prime Sequence
654 bp (654 high quality bases) assembled on 2006-10-24
> BS15313.5prime
GAAGTTATCAGTCGACATGGCCCCTGCCATAAACGCGACGGTCAGCACCC
CTTTTGACTCCACCACGGTGGCCAACGGAACACTTAACACCACTGAAAGT
ACGACATCGGATTGGGAATACGTTAACACCACTTCCGTCACAATTTGGAT
CAACGGTGGCGGCTACGATGGTCCATACATGTTATTTTATCCCAGCTATG
TCATTTACATTGTGCTGGTCTTCCTCTTCGTCATCGCCTTTCCTCTGGCC
ATGATTATGAGCGCCAAACGCAAGCGAGAGACCAATGTGCGGAATCTGGC
CCAGCAGAGACAACGAGCCCGTCGCCAAATGGAGATCAATGTGACGAACA
ATTGCAACGGCGGCTCCGGAGGAGTCGGAAACGTGTGCTCAAACAGCCAG
AACGAAGTTAGTGTCCTGCCCAAGACCTTGGATTTGCCGCCCAGCTACGA
CGAGGCCGCTTTTAGCGAGCGAAAGCAGGACAGCACACTGACCATAGCCA
CCAGCTTGGAAGCGAGCAATCCCAATTTGGCGGTTGGAATTAACGAACCA
CCGCCGGTTTACGAGGCGAACGTGGCCACAACCACCACTTCCACCACCAC
CACCGTATTTTTGGTCAACGGCCAACCACCAGTGGTGTAAAAGCTTTCTA
GACC
BS15313.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:18:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4741-PA | 624 | CG4741-RA | 1..624 | 17..640 | 3120 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:57:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4741-RA | 881 | CG4741-RA | 97..722 | 15..640 | 3130 | 100 | Plus |
CG4741-RB | 854 | CG4741-RB | 367..695 | 312..640 | 1630 | 99.7 | Plus |
CG4741-RC | 880 | CG4741-RC | 437..761 | 316..640 | 1625 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:57:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24610960..24611284 | 640..316 | 1625 | 100 | Minus |
2R | 25286936 | 2R | 24614033..24614277 | 259..15 | 1225 | 100 | Minus |
2R | 25286936 | 2R | 24613914..24613972 | 317..259 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:57:13 has no hits.
BS15313.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:23:12 Download gff for
BS15313.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4741-PA | 1..624 | 17..640 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:58:45 Download gff for
BS15313.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4741-PA | 1..624 | 17..640 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:24:44 Download gff for
BS15313.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4741-RA | 94..731 | 12..647 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:55:49 Download gff for
BS15313.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4741-RA | 94..731 | 12..647 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:55:49 Download gff for
BS15313.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24610951..24611282 | 318..647 | 99 | <- | Minus |
2R | 24613914..24613971 | 260..317 | 100 | <- | Minus |
2R | 24614033..24614280 | 12..259 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:24:44 Download gff for
BS15313.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20501556..20501803 | 12..259 | 99 | | Minus |
arm_2R | 20498474..20498805 | 318..647 | 99 | <- | Minus |
arm_2R | 20501437..20501494 | 260..317 | 100 | <- | Minus |
BS15313.complete Sequence
656 bp assembled on 2006-11-01
GenBank Submission: FJ637914
> BS15313.complete
GAAGTTATCAGTCGACATGGCCCCTGCCATAAACGCGACGGTCAGCACCC
CTTTTGACTCCACCACGGTGGCCAACGGAACACTTAACACCACTGAAAGT
ACGACATCGGATTGGGAATACGTTAACACCACTTCCGTCACAATTTGGAT
CAACGGTGGCGGCTACGATGGTCCATACATGTTATTTTATCCCAGCTATG
TCATTTACATTGTGCTGGTCTTCCTCTTCGTCATCGCCTTTCCTCTGGCC
ATGATTATGAGCGCCAAACGCAAGCGAGAGACCAATGTGCGGAATCTGGC
CCAGCAGAGACAACGAGCCCGTCGCCAAATGGAGATCAATGTGACGAACA
ATTGCAACGGCGGCTCCGGAGGAGTCGGAAACGTGTGCTCAAACAGCCAG
AACGAAGTTAGTGTCCTGCCCAAGACCTTGGATTTGCCGCCCAGCTACGA
CGAGGCCGCTTTTAGCGAGCGAAAGCAGGACAGCACACTGACCATAGCCA
CCAGCTTGGAAGCGAGCAATCCCAATTTGGCGGTTGGAATTAACGAACCA
CCGCCGGTTTACGAGGCGAACGTGGCCACAACCACCACTTCCACCACCAC
CACCGTATTTTTGGTCAACGGCCAACCACCAGTGGTGTAAAAGCTTTCTA
GACCAT
BS15313.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:37:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4741-RA | 624 | CG4741-PA | 1..624 | 17..640 | 3120 | 100 | Plus |
CG4741-RB | 447 | CG4741-PB | 119..447 | 312..640 | 1630 | 99.7 | Plus |
CG4741-RC | 312 | CG4741-PC | 1..312 | 329..640 | 1560 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:37:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4741-RA | 881 | CG4741-RA | 97..722 | 15..640 | 3130 | 100 | Plus |
CG4741-RB | 854 | CG4741-RB | 367..695 | 312..640 | 1630 | 99.7 | Plus |
CG4741-RC | 880 | CG4741-RC | 437..761 | 316..640 | 1625 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:37:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24610960..24611284 | 640..316 | 1625 | 100 | Minus |
2R | 25286936 | 2R | 24614033..24614277 | 259..15 | 1225 | 100 | Minus |
2R | 25286936 | 2R | 24613914..24613972 | 317..259 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:37:24 has no hits.
BS15313.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:33:02 Download gff for
BS15313.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4741-RA | 1..624 | 17..640 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:05:36 Download gff for
BS15313.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4741-RA | 77..714 | 12..647 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:13 Download gff for
BS15313.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4741-RA | 99..720 | 17..638 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:33:02 Download gff for
BS15313.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4741-RA | 77..714 | 12..647 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:49:18 Download gff for
BS15313.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4741-RA | 99..720 | 17..638 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:49:18 Download gff for
BS15313.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24610962..24611282 | 318..638 | 100 | <- | Minus |
2R | 24613914..24613971 | 260..317 | 100 | <- | Minus |
2R | 24614033..24614275 | 17..259 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:13 Download gff for
BS15313.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20498485..20498805 | 318..638 | 100 | <- | Minus |
arm_2R | 20501437..20501494 | 260..317 | 100 | <- | Minus |
arm_2R | 20501556..20501798 | 17..259 | 100 | | Minus |
BS15313.pep Sequence
Translation from 16 to 639
> BS15313.pep
MAPAINATVSTPFDSTTVANGTLNTTESTTSDWEYVNTTSVTIWINGGGY
DGPYMLFYPSYVIYIVLVFLFVIAFPLAMIMSAKRKRETNVRNLAQQRQR
ARRQMEINVTNNCNGGSGGVGNVCSNSQNEVSVLPKTLDLPPSYDEAAFS
ERKQDSTLTIATSLEASNPNLAVGINEPPPVYEANVATTTTSTTTTVFLV
NGQPPVV*
BS15313.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:30:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4741-PA | 207 | CG4741-PA | 1..207 | 1..207 | 1066 | 100 | Plus |
CG4741-PB | 148 | CG4741-PB | 6..148 | 62..207 | 569 | 78.8 | Plus |
CG4741-PC | 103 | CG4741-PC | 1..103 | 105..207 | 530 | 100 | Plus |