Clone BS15313 Report

Search the DGRC for BS15313

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:153
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptCG4741-RA
Protein status:BS15313.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15313.3prime Sequence

655 bp (655 high quality bases) assembled on 2006-10-24

> BS15313.3prime
ATGGTCTAGAAAGCTTTTACACCACTGGTGGTTGGCCGTTGACCAAAAAT
ACGGTGGTGGTGGTGGAAGTGGTGGTTGTGGCCACGTTCGCCTCGTAAAC
CGGCGGTGGTTCGTTAATTCCAACCGCCAAATTGGGATTGCTCGCTTCCA
AGCTGGTGGCTATGGTCAGTGTGCTGTCCTGCTTTCGCTCGCTAAAAGCG
GCCTCGTCGTAGCTGGGCGGCAAATCCAAGGTCTTGGGCAGGACACTAAC
TTCGTTCTGGCTGTTTGAGCACACGTTTCCGACTCCTCCGGAGCCGCCGT
TGCAATTGTTCGTCACATTGATCTCCATTTGGCGACGGGCTCGTTGTCTC
TGCTGGGCCAGATTCCGCACATTGGTCTCTCGCTTGCGTTTGGCGCTCAT
AATCATGGCCAGAGGAAAGGCGATGACGAAGAGGAAGACCAGCACAATGT
AAATGACATAGCTGGGATAAAATAACATGTATGGACCATCGTAGCCGCCA
CCGTTGATCCAAATTGTGACGGAAGTGGTGTTAACGTATTCCCAATCCGA
TGTCGTACTTTCAGTGGTGTTAAGTGTTCCGTTGGCCACCGTGGTGGAGT
CAAAAGGGGTGCTGACCGTCGCGTTTATGGCAGGGGCCATGTCGACTGAT
AACTT

BS15313.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:18:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG4741-PA 624 CG4741-RA 1..624 640..17 3120 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:38:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG4741-RA 881 CG4741-RA 97..722 642..17 3130 100 Minus
CG4741-RB 854 CG4741-RB 367..695 345..17 1630 99.7 Minus
CG4741-RC 880 CG4741-RC 437..761 341..17 1625 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:38:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24610960..24611284 17..341 1625 100 Plus
2R 25286936 2R 24614033..24614277 398..642 1225 100 Plus
2R 25286936 2R 24613914..24613972 340..398 295 100 Plus
Blast to na_te.dros performed on 2015-02-10 16:38:33 has no hits.

BS15313.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:23:11 Download gff for BS15313.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4741-PA 1..624 17..640 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:58:44 Download gff for BS15313.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4741-PA 1..624 17..640 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:30:55 Download gff for BS15313.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4741-RA 94..731 10..645 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:25:32 Download gff for BS15313.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4741-RA 94..731 10..645 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:25:32 Download gff for BS15313.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 24610951..24611282 10..339 99 <- Plus
2R 24613914..24613971 340..397 100 <- Plus
2R 24614033..24614280 398..645 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:30:55 Download gff for BS15313.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20498474..20498805 10..339 99 <- Plus
arm_2R 20501437..20501494 340..397 100 <- Plus
arm_2R 20501556..20501803 398..645 99   Plus

BS15313.5prime Sequence

654 bp (654 high quality bases) assembled on 2006-10-24

> BS15313.5prime
GAAGTTATCAGTCGACATGGCCCCTGCCATAAACGCGACGGTCAGCACCC
CTTTTGACTCCACCACGGTGGCCAACGGAACACTTAACACCACTGAAAGT
ACGACATCGGATTGGGAATACGTTAACACCACTTCCGTCACAATTTGGAT
CAACGGTGGCGGCTACGATGGTCCATACATGTTATTTTATCCCAGCTATG
TCATTTACATTGTGCTGGTCTTCCTCTTCGTCATCGCCTTTCCTCTGGCC
ATGATTATGAGCGCCAAACGCAAGCGAGAGACCAATGTGCGGAATCTGGC
CCAGCAGAGACAACGAGCCCGTCGCCAAATGGAGATCAATGTGACGAACA
ATTGCAACGGCGGCTCCGGAGGAGTCGGAAACGTGTGCTCAAACAGCCAG
AACGAAGTTAGTGTCCTGCCCAAGACCTTGGATTTGCCGCCCAGCTACGA
CGAGGCCGCTTTTAGCGAGCGAAAGCAGGACAGCACACTGACCATAGCCA
CCAGCTTGGAAGCGAGCAATCCCAATTTGGCGGTTGGAATTAACGAACCA
CCGCCGGTTTACGAGGCGAACGTGGCCACAACCACCACTTCCACCACCAC
CACCGTATTTTTGGTCAACGGCCAACCACCAGTGGTGTAAAAGCTTTCTA
GACC

BS15313.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:18:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG4741-PA 624 CG4741-RA 1..624 17..640 3120 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:57:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG4741-RA 881 CG4741-RA 97..722 15..640 3130 100 Plus
CG4741-RB 854 CG4741-RB 367..695 312..640 1630 99.7 Plus
CG4741-RC 880 CG4741-RC 437..761 316..640 1625 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:57:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24610960..24611284 640..316 1625 100 Minus
2R 25286936 2R 24614033..24614277 259..15 1225 100 Minus
2R 25286936 2R 24613914..24613972 317..259 295 100 Minus
Blast to na_te.dros performed on 2015-02-13 00:57:13 has no hits.

BS15313.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:23:12 Download gff for BS15313.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4741-PA 1..624 17..640 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:58:45 Download gff for BS15313.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4741-PA 1..624 17..640 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:24:44 Download gff for BS15313.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4741-RA 94..731 12..647 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:55:49 Download gff for BS15313.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4741-RA 94..731 12..647 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:55:49 Download gff for BS15313.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24610951..24611282 318..647 99 <- Minus
2R 24613914..24613971 260..317 100 <- Minus
2R 24614033..24614280 12..259 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:24:44 Download gff for BS15313.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20501556..20501803 12..259 99   Minus
arm_2R 20498474..20498805 318..647 99 <- Minus
arm_2R 20501437..20501494 260..317 100 <- Minus

BS15313.complete Sequence

656 bp assembled on 2006-11-01

GenBank Submission: FJ637914

> BS15313.complete
GAAGTTATCAGTCGACATGGCCCCTGCCATAAACGCGACGGTCAGCACCC
CTTTTGACTCCACCACGGTGGCCAACGGAACACTTAACACCACTGAAAGT
ACGACATCGGATTGGGAATACGTTAACACCACTTCCGTCACAATTTGGAT
CAACGGTGGCGGCTACGATGGTCCATACATGTTATTTTATCCCAGCTATG
TCATTTACATTGTGCTGGTCTTCCTCTTCGTCATCGCCTTTCCTCTGGCC
ATGATTATGAGCGCCAAACGCAAGCGAGAGACCAATGTGCGGAATCTGGC
CCAGCAGAGACAACGAGCCCGTCGCCAAATGGAGATCAATGTGACGAACA
ATTGCAACGGCGGCTCCGGAGGAGTCGGAAACGTGTGCTCAAACAGCCAG
AACGAAGTTAGTGTCCTGCCCAAGACCTTGGATTTGCCGCCCAGCTACGA
CGAGGCCGCTTTTAGCGAGCGAAAGCAGGACAGCACACTGACCATAGCCA
CCAGCTTGGAAGCGAGCAATCCCAATTTGGCGGTTGGAATTAACGAACCA
CCGCCGGTTTACGAGGCGAACGTGGCCACAACCACCACTTCCACCACCAC
CACCGTATTTTTGGTCAACGGCCAACCACCAGTGGTGTAAAAGCTTTCTA
GACCAT

BS15313.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:37:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG4741-RA 624 CG4741-PA 1..624 17..640 3120 100 Plus
CG4741-RB 447 CG4741-PB 119..447 312..640 1630 99.7 Plus
CG4741-RC 312 CG4741-PC 1..312 329..640 1560 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:37:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG4741-RA 881 CG4741-RA 97..722 15..640 3130 100 Plus
CG4741-RB 854 CG4741-RB 367..695 312..640 1630 99.7 Plus
CG4741-RC 880 CG4741-RC 437..761 316..640 1625 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:37:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24610960..24611284 640..316 1625 100 Minus
2R 25286936 2R 24614033..24614277 259..15 1225 100 Minus
2R 25286936 2R 24613914..24613972 317..259 295 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:37:24 has no hits.

BS15313.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:33:02 Download gff for BS15313.complete
Subject Subject Range Query Range Percent Splice Strand
CG4741-RA 1..624 17..640 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:05:36 Download gff for BS15313.complete
Subject Subject Range Query Range Percent Splice Strand
CG4741-RA 77..714 12..647 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:13 Download gff for BS15313.complete
Subject Subject Range Query Range Percent Splice Strand
CG4741-RA 99..720 17..638 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:33:02 Download gff for BS15313.complete
Subject Subject Range Query Range Percent Splice Strand
CG4741-RA 77..714 12..647 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:49:18 Download gff for BS15313.complete
Subject Subject Range Query Range Percent Splice Strand
CG4741-RA 99..720 17..638 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:49:18 Download gff for BS15313.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24610962..24611282 318..638 100 <- Minus
2R 24613914..24613971 260..317 100 <- Minus
2R 24614033..24614275 17..259 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:13 Download gff for BS15313.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20498485..20498805 318..638 100 <- Minus
arm_2R 20501437..20501494 260..317 100 <- Minus
arm_2R 20501556..20501798 17..259 100   Minus

BS15313.pep Sequence

Translation from 16 to 639

> BS15313.pep
MAPAINATVSTPFDSTTVANGTLNTTESTTSDWEYVNTTSVTIWINGGGY
DGPYMLFYPSYVIYIVLVFLFVIAFPLAMIMSAKRKRETNVRNLAQQRQR
ARRQMEINVTNNCNGGSGGVGNVCSNSQNEVSVLPKTLDLPPSYDEAAFS
ERKQDSTLTIATSLEASNPNLAVGINEPPPVYEANVATTTTSTTTTVFLV
NGQPPVV*

BS15313.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:30:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG4741-PA 207 CG4741-PA 1..207 1..207 1066 100 Plus
CG4741-PB 148 CG4741-PB 6..148 62..207 569 78.8 Plus
CG4741-PC 103 CG4741-PC 1..103 105..207 530 100 Plus