Clone Sequence Records
BS15316.3prime Sequence
516 bp (516 high quality bases) assembled on 2006-10-24
> BS15316.3prime
ATGGTCTAGAAAGCTTTTAGCCTGTGCGTTTGCGTTTGTTGGCGGCAGTA
TTCGCCTTCTTCTTGGCTGCCACAGGTGTCTTCTTCTTTTGGGCAACAGG
TGTTTGCTTCTTGGCAGACGCGGCTGCCGCTACTTTGCGTTTGGGAGCAG
CGGTGGTGGTGCGCCTGCGCCGTCTAGCTCTGCGTGCAGCAGTTTTCTTG
GCTTTTTCTGCCTTGGTTGGAGTTGAACTGGAGGTCGTTTCGGCGGAGGA
ACCATCTCCAGAAGTTTCTGAAGAACTACCTGTATCGGAAGCTTCGCCGG
AGGAACTGTCCTCGGAGGTACTAGCATCATCTTCTGAGCTACTGGATGCA
CCAACACCACTTTCCGAACTGGACTCTACATCAGAGTCGTCATAGTAGTC
ATCACCATAGTCGTAATAATCGTAATAGTCATCGTCAGTGTCATCAGCAC
CCGTTACGAAGGCAACCAATATGGCCAGGCTTAAAACCAACAGCAGCCTC
ATGTCGACTGATAACT
BS15316.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:18:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9040-PA | 486 | CG9040-RA | 1..486 | 502..17 | 2430 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:09:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9040-RA | 749 | CG9040-RA | 65..550 | 502..17 | 2430 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:09:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13987942..13988427 | 502..17 | 2430 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:09:32 has no hits.
BS15316.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:23:17 Download gff for
BS15316.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9040-PA | 1..486 | 17..502 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:58:52 Download gff for
BS15316.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9040-PA | 1..486 | 17..502 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:51:15 Download gff for
BS15316.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9040-RA | 65..552 | 13..502 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:30:52 Download gff for
BS15316.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9040-RA | 65..552 | 13..502 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:30:52 Download gff for
BS15316.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13987942..13988429 | 13..502 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:51:15 Download gff for
BS15316.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13981042..13981529 | 13..502 | 99 | | Minus |
BS15316.5prime Sequence
516 bp (516 high quality bases) assembled on 2006-10-24
> BS15316.5prime
GAAGTTATCAGTCGACATGAGGCTGCTGTTGGTTTTAAGCCTGGCCATAT
TGGTTGCCTTCGTAACGGGTGCTGATGACACTGACGATGACTATTACGAT
TATTACGACTATGGTGATGACTACTATGACGACTCTGATGTAGAGTCCAG
TTCGGAAAGTGGTGTTGGTGCATCCAGTAGCTCAGAAGATGATGCTAGTA
CCTCCGAGGACAGTTCCTCCGGCGAAGCTTCCGATACAGGTAGTTCTTCA
GAAACTTCTGGAGATGGTTCCTCCGCCGAAACGACCTCCAGTTCAACTCC
AACCAAGGCAGAAAAAGCCAAGAAAACTGCTGCACGCAGAGCTAGACGGC
GCAGGCGCACCACCACCGCTGCTCCCAAACGCAAAGTAGCGGCAGCCGCG
TCTGCCAAGAAGCAAACACCTGTTGCCCAAAAGAAGAAGACACCTGTGGC
AGCCAAGAAGAAGGCGAATACTGCCGCCAACAAACGCAAACGCACAGGCT
AAAAGCTTTCTAGACC
BS15316.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:18:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9040-PA | 486 | CG9040-RA | 1..486 | 17..502 | 2430 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:33:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9040-RA | 749 | CG9040-RA | 65..550 | 17..502 | 2430 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:32:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13987942..13988427 | 17..502 | 2430 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 03:33:00 has no hits.
BS15316.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:23:18 Download gff for
BS15316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9040-PA | 1..486 | 17..502 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:58:53 Download gff for
BS15316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9040-PA | 1..486 | 17..502 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:06:09 Download gff for
BS15316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9040-RA | 65..552 | 17..506 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:39:32 Download gff for
BS15316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9040-RA | 65..552 | 17..506 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:39:32 Download gff for
BS15316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13987942..13988429 | 17..506 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:06:09 Download gff for
BS15316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13981042..13981529 | 17..506 | 99 | | Plus |
BS15316.complete Sequence
518 bp assembled on 2006-11-01
GenBank Submission: FJ637915
> BS15316.complete
GAAGTTATCAGTCGACATGAGGCTGCTGTTGGTTTTAAGCCTGGCCATAT
TGGTTGCCTTCGTAACGGGTGCTGATGACACTGACGATGACTATTACGAT
TATTACGACTATGGTGATGACTACTATGACGACTCTGATGTAGAGTCCAG
TTCGGAAAGTGGTGTTGGTGCATCCAGTAGCTCAGAAGATGATGCTAGTA
CCTCCGAGGACAGTTCCTCCGGCGAAGCTTCCGATACAGGTAGTTCTTCA
GAAACTTCTGGAGATGGTTCCTCCGCCGAAACGACCTCCAGTTCAACTCC
AACCAAGGCAGAAAAAGCCAAGAAAACTGCTGCACGCAGAGCTAGACGGC
GCAGGCGCACCACCACCGCTGCTCCCAAACGCAAAGTAGCGGCAGCCGCG
TCTGCCAAGAAGCAAACACCTGTTGCCCAAAAGAAGAAGACACCTGTGGC
AGCCAAGAAGAAGGCGAATACTGCCGCCAACAAACGCAAACGCACAGGCT
AAAAGCTTTCTAGACCAT
BS15316.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:02:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9040-RA | 486 | CG9040-PA | 1..486 | 17..502 | 2430 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:02:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9040-RA | 749 | CG9040-RA | 65..550 | 17..502 | 2430 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:02:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13987942..13988427 | 17..502 | 2430 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:02:19 has no hits.
BS15316.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:32:34 Download gff for
BS15316.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9040-RA | 1..486 | 17..502 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:16:48 Download gff for
BS15316.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9040-RA | 44..531 | 17..506 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:48:03 Download gff for
BS15316.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9040-RA | 65..548 | 17..500 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:32:35 Download gff for
BS15316.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9040-RA | 44..531 | 17..506 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:09:45 Download gff for
BS15316.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9040-RA | 65..548 | 17..500 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:09:45 Download gff for
BS15316.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13987942..13988425 | 17..500 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:48:03 Download gff for
BS15316.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13981042..13981525 | 17..500 | 100 | | Plus |
BS15316.pep Sequence
Translation from 16 to 501
> BS15316.pep
MRLLLVLSLAILVAFVTGADDTDDDYYDYYDYGDDYYDDSDVESSSESGV
GASSSSEDDASTSEDSSSGEASDTGSSSETSGDGSSAETTSSSTPTKAEK
AKKTAARRARRRRRTTTAAPKRKVAAAASAKKQTPVAQKKKTPVAAKKKA
NTAANKRKRTG*
BS15316.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:30:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9040-PA | 161 | CG9040-PA | 1..161 | 1..161 | 790 | 100 | Plus |
| CG17362-PB | 153 | CG17362-PB | 1..153 | 1..161 | 253 | 42.9 | Plus |
| CG14265-PB | 119 | CG14265-PB | 26..108 | 40..127 | 136 | 39.8 | Plus |
