Clone Sequence Records
BS15321.complete Sequence
797 bp assembled on 2010-02-09
GenBank Submission: KX800355
> BS15321.complete
GAAGTTATCAGTCGACATGAAACTCGCTCTGCTTGCCATCCTGATCGTTT
CCTTGGCCCTGGCCCAGGCCACCGACTATTGTTCGTCGGACATCTGCAAC
GGTGGCTCCCACATCGCCTGTGGGCATAGCAACTGGTGGGACAGTAGCTG
TCCCGGCGATGCCGAGCTGATCGACATCAACGATGACTACAAGTGGGTCT
TTGTCCACTCGCACAACGACAAGAGGAACTACATTGCCGGTGGCTACGAT
TCCAATCACAATGCCGCCTGCCGTATGGCCACCATGGAGTGGGACGATGA
GCTGGCCTATCTGGCCTCCCTGAATGTGCGCCAGTGCAACATGGTGCACG
ATAGCTGCCACAACACCGACGCCTTCAAGTACTCCGGCCAGAATCTGGCA
TGGCAGGCCTACTCCGGCGACCTGCCCGACATGGGCTACATCCTGGACAA
CAGCGTGCAGATGTGGTTCGATGAGGTGCACAACTCCAACGCCGGTATTA
TTGCCGGCGGATACCCATCCGGATATAACGGACCTGCCATTGGCCACTTC
ACCGTGATGATGTCGGAGAGGAACACCCGCTTGGGATGTGCTGCTGCTCG
GTACAATCGCGATGGATGGAACCAAGTGCTGGTGGCCTGCAACTATGCTA
CCACCAATATGATCGGACGCCAGATCTACTCCAGCTGTGACTGGGGAGCA
CAGGGCTGCGGATCGGGCACCAATGGCGAGTTTGGTAACCTCTGCTCAAC
ATCCGAGTGGTACGACGTGAACAGCTGGTAAAAGCTTTCTAGACCAT
BS15321.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:29:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ag5r2-RA | 765 | CG9540-PA | 1..765 | 17..781 | 3825 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:29:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ag5r2-RA | 849 | CG9540-RA | 47..812 | 17..782 | 3830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:29:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14783489..14784006 | 534..17 | 2590 | 100 | Minus |
X | 23542271 | X | 14782999..14783246 | 782..535 | 1240 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:29:56 has no hits.
BS15321.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:11:44 Download gff for
BS15321.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ag5r2-RA | 37..799 | 17..779 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:00:29 Download gff for
BS15321.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ag5r2-RA | 47..809 | 17..779 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:24:25 Download gff for
BS15321.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ag5r2-RA | 37..799 | 17..779 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:30:18 Download gff for
BS15321.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ag5r2-RA | 47..809 | 17..779 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:30:18 Download gff for
BS15321.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14783002..14783246 | 535..779 | 100 | <- | Minus |
X | 14783489..14784006 | 17..534 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:00:29 Download gff for
BS15321.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14677035..14677279 | 535..779 | 100 | <- | Minus |
arm_X | 14677522..14678039 | 17..534 | 100 | | Minus |
BS15321.3prime Sequence
763 bp (711 high quality bases) assembled on 2006-10-24
> BS15321.3prime
ATGGTCTAGAAAGCTTTTACCAGCTGTTCACGTCGTACCACTCGGATGTT
GAGCAGAGGTTACCAAACTCGCCATTGGTGCCCGATCCGCAGCCCTGTGC
TCCCCAGTCACAGCTGGAGTAGATCTGGCGTCCGATCATATTGGTGGTAG
CATAGTTGCAGGCCACCAGCACTTGGTTCCATCCATCGCGATTGTACCGA
GCAGCAGCACATCCCAAGCGGGTGTTCCTCTCCGACATCATCACGGTGAA
GTGGCCAATGGCAGGTCCGTTATATCCGGATGGGTATCCGCCGGCAATAA
TACCGGCGTTGGAGTTGTGCACCTCATCGAACCACATCTGCACGCTGTTG
TCCAGGATGTAGCCCATGTCGGGCAGGTCGCCGGAGTAGGCCTGCCATGC
CAGATTCTGGCCGGAGTACTTGAAGGCGTCGGTGTTGTGGCAGCTATCGT
GCACCATGTTGCACTGGCGCACATTCAGGGAGGCCAGATAGGCCAGCTCA
TCGTCCCACTCCATGGTGGCCATACGGCAGGCGGCATTGTGATTGGAATC
GTAGCCACCGGCAATGTAGTTCCTCTTGTCGTTGTGCGAGTGGACAAAGA
CCCACTTGTAGTCATCGTTGATGTCGATCAGCTCGGCATCGCCGGGACAG
CTACTGTCCCACCAGTTGCTATGCCCACAGGCGATGTGGGAGCCACCGTT
GCAGATGTCCGACGAACAATAGTCGGTGGCCTGGGCCAGGGCCAAGGAAA
CGATCAGGATGGC
BS15321.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:18:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9540-PA | 765 | Ag5r2-RA | 19..765 | 763..17 | 3735 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:08:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ag5r2-RA | 849 | CG9540-RA | 65..812 | 763..16 | 3740 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:08:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14783489..14783988 | 264..763 | 2500 | 100 | Plus |
X | 23542271 | X | 14782999..14783246 | 16..263 | 1240 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 07:08:50 has no hits.
BS15321.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:23:25 Download gff for
BS15321.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ag5r2-PA | 19..765 | 17..763 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:59:03 Download gff for
BS15321.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9540-PA | 19..765 | 17..763 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:51:11 Download gff for
BS15321.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ag5r2-RA | 65..815 | 12..763 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:29:53 Download gff for
BS15321.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ag5r2-RA | 65..815 | 12..763 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:29:53 Download gff for
BS15321.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14782996..14783246 | 12..263 | 99 | <- | Plus |
X | 14783489..14783988 | 264..763 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:51:11 Download gff for
BS15321.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14677029..14677279 | 12..263 | 99 | <- | Plus |
arm_X | 14677522..14678021 | 264..763 | 100 | | Plus |
BS15321.5prime Sequence
731 bp (730 high quality bases) assembled on 2006-10-24
> BS15321.5prime
GAAGTTATCATTCGACATGAAACTCGCTCTGCTTGCCATCCTGATCGTTT
CCTTGGCCCTGGCCCAGGCCACCGACTATTGTTCGTCGGACATCTGCAAC
GGTGGCTCCCACATCGCCTGTGGGCATAGCAACTGGTGGGACAGTAGCTG
TCCCGGCGATGCCGAGCTGATCGACATCAACGATGACTACAAGTGGGTCT
TTGTCCACTCGCACAACGACAAGAGGAACTACATTGCCGGTGGCTACGAT
TCCAATCACAATGCCGCCTGCCGTATGGCCACCATGGAGTGGGACGATGA
GCTGGCCTATCTGGCCTCCCTGAATGTGCGCCAGTGCAACATGGTGCACG
ATAGCTGCCACAACACCGACGCCTTCAAGTACTCCGGCCAGAATCTGGCA
TGGCAGGCCTACTCCGGCGACCTGCCCGACATGGGCTACATCCTGGACAA
CAGCGTGCAGATGTGGTTCGATGAGGTGCACAACTCCAACGCCGGTATTA
TTGCCGGCGGATACCCATCCGGATATAACGGACCTGCCATTGGCCACTTC
ACCGTGATGATGTCGGAGAGGAACACCCGCTTGGGATGTGCTGCTGCTCG
GTACAATCGCGATGGATGGAACCAAGTGCTGGTGGCCTGCAACTATGCTA
CCACCAATATGATCGGACGCCAGATCTACTCCAGCTGTGACTGGGGAGCA
CAGGGCTGCGGATCGGGCACCAATGGCGAGT
BS15321.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:18:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9540-PA | 765 | Ag5r2-RA | 1..715 | 17..731 | 3575 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:52:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ag5r2-RA | 849 | CG9540-RA | 47..761 | 17..731 | 3575 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:52:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14783489..14784006 | 534..17 | 2590 | 100 | Minus |
X | 23542271 | X | 14783050..14783246 | 731..535 | 985 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:52:54 has no hits.
BS15321.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:23:26 Download gff for
BS15321.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ag5r2-PA | 1..715 | 17..731 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:59:05 Download gff for
BS15321.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9540-PA | 1..715 | 17..731 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:24:21 Download gff for
BS15321.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ag5r2-RA | 47..761 | 17..731 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:59:18 Download gff for
BS15321.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ag5r2-RA | 47..761 | 17..731 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:59:18 Download gff for
BS15321.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14783050..14783246 | 535..731 | 100 | <- | Minus |
X | 14783489..14784006 | 17..534 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:24:21 Download gff for
BS15321.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14677083..14677279 | 535..731 | 100 | <- | Minus |
arm_X | 14677522..14678039 | 17..534 | 100 | | Minus |
BS15321.pep Sequence
Translation from 16 to 780
> BS15321.pep
MKLALLAILIVSLALAQATDYCSSDICNGGSHIACGHSNWWDSSCPGDAE
LIDINDDYKWVFVHSHNDKRNYIAGGYDSNHNAACRMATMEWDDELAYLA
SLNVRQCNMVHDSCHNTDAFKYSGQNLAWQAYSGDLPDMGYILDNSVQMW
FDEVHNSNAGIIAGGYPSGYNGPAIGHFTVMMSERNTRLGCAAARYNRDG
WNQVLVACNYATTNMIGRQIYSSCDWGAQGCGSGTNGEFGNLCSTSEWYD
VNSW*
BS15321.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:12:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ag5r2-PA | 254 | CG9540-PA | 1..254 | 1..254 | 1425 | 100 | Plus |
Ag5r-PC | 256 | CG9538-PC | 10..253 | 9..253 | 637 | 50.4 | Plus |
Ag5r-PB | 256 | CG9538-PB | 10..253 | 9..253 | 637 | 50.4 | Plus |
Ag5r-PA | 256 | CG9538-PA | 10..253 | 9..253 | 637 | 50.4 | Plus |
CG32679-PA | 254 | CG32679-PA | 10..252 | 5..254 | 465 | 38.2 | Plus |