Clone BS15323 Report

Search the DGRC for BS15323

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:153
Well:23
Vector:pDNR-Dual
Associated Gene/TranscriptCep89-RA
Protein status:BS15323.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15323.3prime Sequence

789 bp (688 high quality bases) assembled on 2006-10-24

> BS15323.3prime
ATGGTCTAGAAAGCTTTTAATCCACCGCCGGTCTGCGCTCCATTTTGCCT
CTAAGCAGCGCACATATCGTTTCCTCCTTCTGCTGTAACTTATGACGCAA
CTTGTCCATTTCTTCTGCATTCCGGGCATGCAATCCGCGCAATTGTGACT
CCTTGTGCTGGACAAGTACTTCCAGGCGGCGTACCGCCTCGTAGGTATCG
CGCACCTCAGCCTGCCCTGCCTCCAGCTTTTGGGCCCACTGCAGCGCCAT
TCTCAGACGAGCCTTAAGCCGATCTCTGCTGTGCTTGGCTTTTTCCGTGC
TGCGGACCAGTGAAGCTGCCCGTGCGGTGGTGGCTTGCAGCTGTTCCTGG
AGGCAAGTTCGCTCTCTCGCATGCTCCTGCCGCAATTGCTCAAGCAGGGC
TTTGCACTGATGCAGTGCCTCGGATTCGGCGGGAACTGGAGGAGCAACCG
CAGCGGGCGCCGCCGATGAGGCACTTTTAAGCGCGGCTAGTTCGGATTTA
GTTCGCGCGTAGGCCGCCTGCAGGTGATCCATGTCCAGGATCAGCGTCTG
CATGCGCTGTTCGTAGCAGTGCATCACTTCCACCAGCTTCTCCTTGGCCA
AGTCCGTCTTGCGAGTTTGCGCCTCCGCTTTGGAGCGGCATACTCCTAGT
TGGGCCTGCAGACACACTCGCTCCTCTCGCCAGCCGCCGAGGTCACGACG
CAATTGCTCCTGGGACTGCAGCAGCTTTGTGTTCTCCTCCAGGGCTCGCT
TTAGTTCCCCAGTGAAGTGCTCCAACTCTGTGTTATATT

BS15323.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:18:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG8214-PA 1431 CG8214-RA 659..1431 789..17 3815 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:23:34
Subject Length Description Subject Range Query Range Score Percent Strand
Cep89-RA 1483 CG8214-RA 664..1436 789..17 3835 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:23:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15687435..15688140 17..722 3515 99.9 Plus
2R 25286936 2R 15688204..15688271 722..789 325 98.5 Plus
Blast to na_te.dros performed on 2015-02-11 23:23:31 has no hits.

BS15323.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:23:27 Download gff for BS15323.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8214-PA 659..1431 17..789 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:59:07 Download gff for BS15323.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8214-PA 659..1431 17..789 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:35:53 Download gff for BS15323.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8214-RA 664..1439 13..789 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:51:00 Download gff for BS15323.3prime
Subject Subject Range Query Range Percent Splice Strand
Cep89-RA 664..1439 13..789 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:51:00 Download gff for BS15323.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 15687432..15688139 13..721 99 <- Plus
2R 15688204..15688271 722..789 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:35:53 Download gff for BS15323.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11574937..11575644 13..721 99 <- Plus
arm_2R 11575709..11575776 722..789 98   Plus

BS15323.5prime Sequence

872 bp (780 high quality bases) assembled on 2006-10-24

> BS15323.5prime
GAAGTTATCAGTCGACATGAGCACGCGAAATGTGATGATAACGGACCTGG
ATCAGCCAGATCCGAACCAGCAGCAGCATCATCAAAATCCCAAAAAGAAC
CGAAAGGTTCTCCAAACTCTGTCGGGCAATTTTAATCGTCGGTCACGAAG
CGTGGAGGTGGAAGTAAAGCGACAGGATAACTTGGGTGTTGTCCACAAAG
ATCGCAAAAAGGATCGTTCGTTTAACTCGCTGTTGCAAGCCAAGGACCAG
CAGTTGGAGCAGCTTGTGCAGCGATTAGCCACCCTGCATCGATACAACGA
CCAATTCGCCAAGGAGAATGACCAACTACGCAAGGACAGCGGCCAGCTGG
AGCGGCGTCTTACGGAGGCGGAGCAGCAGGTTGCCAATTGCAGCCGCTGT
CAACAGCTCGGCCAACGACTGGACACCGTTCTTGCACAGAATAGAACATT
AGCCGGCGACGTGGACATGCTGAAGACGCTCGTCTTCAGGCTGAACGTGC
AAATTGAGAGTTACCAGGATCAACGGCGTCTCGGTGAGGGTGCACCCACT
TGTGGAGGATCAACGAAAGTCAGCTCGTCATCTGCTCCGTATCCGCCACT
GCCCACTCACACGTTGGGACCACTCCTGCAGGCATACGATGAATCTCTAA
GGGATAAGGACGCTCTTTTGGCTCAATATAACACAGAGTTCGAGCACTTC
ACTGGGGAACTAAAGCGAGCCCTGGAGGAGAACACAAAGCTGCTGCAGTC
CCAGGAGCAACTGCGTCGTGACCTCGGCGGCTGGCGAGAGGAGCGAGTGT
GTCTGCAGGCCCAACTAGGAGTATGCCGCTCCAAAGCGGAGGCGCAAACT
CGCAAGACGGACTTGGGCCAAG

BS15323.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:18:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG8214-PA 1431 CG8214-RA 1..850 17..866 4250 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:28:21
Subject Length Description Subject Range Query Range Score Percent Strand
Cep89-RA 1483 CG8214-RA 6..860 17..872 4255 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:28:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15688204..15688714 742..232 2555 100 Minus
2R 25286936 2R 15688765..15688980 232..17 1080 100 Minus
2R 25286936 2R 15688016..15688140 866..742 625 100 Minus
Blast to na_te.dros performed 2015-02-10 16:28:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6846..6900 45..99 113 67.3 Plus

BS15323.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:23:28 Download gff for BS15323.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8214-PA 1..855 17..872 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:59:08 Download gff for BS15323.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8214-PA 1..855 17..872 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:40:21 Download gff for BS15323.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8214-RA 1..860 13..872 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:32:10 Download gff for BS15323.5prime
Subject Subject Range Query Range Percent Splice Strand
Cep89-RA 1..860 13..872 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:32:10 Download gff for BS15323.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 15688765..15688980 17..232 100   Minus
2R 15688011..15688139 743..872 99 <- Minus
2R 15688204..15688713 233..742 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:40:21 Download gff for BS15323.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11575516..11575644 743..872 99 <- Minus
arm_2R 11575709..11576218 233..742 100 <- Minus
arm_2R 11576270..11576485 17..232 100   Minus

BS15323.complete Sequence

1463 bp assembled on 2006-11-01

GenBank Submission: FJ637916

> BS15323.complete
GAAGTTATCAGTCGACATGAGCACGCGAAATGTGATGATAACGGACCTGG
ATCAGCCAGATCCGAACCAGCAGCAGCATCATCAAAATCCCAAAAAGAAC
CGAAAGGTTCTCCAAACTCTGTCGGGCAATTTTAATCGTCGGTCACGAAG
CGTGGAGGTGGAAGTAAAGCGACAGGATAACTTGGGTGTTGTCCACAAAG
ATCGCAAAAAGGATCGTTCGTTTAACTCGCTGTTGCAAGCCAAGGACCAG
CAGTTGGAGCAGCTTGTGCAGCGATTAGCCACCCTGCATCGATACAACGA
CCAATTCGCCAAGGAGAATGACCAACTACGCAAGGACAGCGGCCAGCTGG
AGCGGCGTCTTACGGAGGCGGAGCAGCAGGTTGCCAATTGCAGCCGCTGT
CAACAGCTCGGCCAACGACTGGACACCGTTCTTGCACAGAATAGAACATT
AGCCGGCGACGTGGACATGCTGAAGACGCTCGTCTTCAGGCTGAACGTGC
AAATTGAGAGTTACCAGGATCAACGGCGTCTCGGTGAGGGTGCACCCACT
TGTGGAGGATCAACGAAAGTCAGCTCGTCATCTGCTCCGTATCCGCCACT
GCCCACTCACACGTTGGGACCACTCCTGCAGGCATACGATGAATCTCTAA
GGGATAAGGACGCTCTTTTGGCTCAATATAACACAGAGTTCGAGCACTTC
ACTGGGGAACTAAAGCGAGCCCTGGAGGAGAACACAAAGCTGCTGCAGTC
CCAGGAGCAACTGCGTCGTGACCTCGGCGGCTGGCGAGAGGAGCGAGTGT
GTCTGCAGGCCCAACTAGGAGTATGCCGCTCCAAAGCGGAGGCGCAAACT
CGCAAGACGGACTTGGCCAAGGAGAAGCTGGTGGAAGTGATGCACTGCTA
CGAACAGCGCATGCAGACGCTGATCCTGGACATGGATCACCTGCAGGCGG
CCTACGCGCGAACTAAATCCGAACTAGCCGCGCTTAAAAGTGCCTCATCG
GCGGCGCCCGCTGCGGTTGCTCCTCCAGTTCCCGCCGAATCCGAGGCACT
GCATCAGTGCAAAGCCCTGCTTGAGCAATTGCGGCAGGAGCATGCGAGAG
AGCGAACTTGCCTCCAGGAACAGCTGCAAGCCACCACCGCACGGGCAGCT
TCACTGGTCCGCAGCACGGAAAAAGCCAAGCACAGCAGAGATCGGCTTAA
GGCTCGTCTGAGAATGGCGCTGCAGTGGGCCCAAAAGCTGGAGGCAGGGC
AGGCTGAGGTGCGCGATACCTACGAGGCGGTACGCCGCCTGGAAGTACTT
GTCCAGCACAAGGAGTCACAATTGCGCGGATTGCATGCCCGGAATGCAGA
AGAAATGGACAAGTTGCGTCATAAGTTACAGCAGAAGGAGGAAACGATAT
GTGCGCTGCTTAGAGGCAAAATGGAGCGCAGACCGGCGGTGGATTAAAAG
CTTTCTAGACCAT

BS15323.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:15:36
Subject Length Description Subject Range Query Range Score Percent Strand
Cep89-RA 1431 CG8214-PA 1..1431 17..1447 7155 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:15:38
Subject Length Description Subject Range Query Range Score Percent Strand
Cep89-RA 1483 CG8214-RA 6..1436 17..1447 7155 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:15:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15687435..15688140 1447..742 3530 100 Minus
2R 25286936 2R 15688204..15688714 742..232 2555 100 Minus
2R 25286936 2R 15688765..15688980 232..17 1080 100 Minus
Blast to na_te.dros performed 2014-11-27 13:15:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6846..6900 45..99 113 67.3 Plus

BS15323.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:33:03 Download gff for BS15323.complete
Subject Subject Range Query Range Percent Splice Strand
CG8214-RA 1..1431 17..1447 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:05:38 Download gff for BS15323.complete
Subject Subject Range Query Range Percent Splice Strand
CG8214-RA 1..1439 13..1451 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:28:19 Download gff for BS15323.complete
Subject Subject Range Query Range Percent Splice Strand
CG8214-RA 6..1434 17..1445 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:33:03 Download gff for BS15323.complete
Subject Subject Range Query Range Percent Splice Strand
CG8214-RA 1..1439 13..1451 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:14:20 Download gff for BS15323.complete
Subject Subject Range Query Range Percent Splice Strand
Cep89-RA 6..1434 17..1445 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:14:20 Download gff for BS15323.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15687437..15688139 743..1445 100 <- Minus
2R 15688204..15688713 233..742 100 <- Minus
2R 15688765..15688980 17..232 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:28:19 Download gff for BS15323.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11574942..11575644 743..1445 100 <- Minus
arm_2R 11575709..11576218 233..742 100 <- Minus
arm_2R 11576270..11576485 17..232 100   Minus

BS15323.pep Sequence

Translation from 16 to 1446

> BS15323.pep
MSTRNVMITDLDQPDPNQQQHHQNPKKNRKVLQTLSGNFNRRSRSVEVEV
KRQDNLGVVHKDRKKDRSFNSLLQAKDQQLEQLVQRLATLHRYNDQFAKE
NDQLRKDSGQLERRLTEAEQQVANCSRCQQLGQRLDTVLAQNRTLAGDVD
MLKTLVFRLNVQIESYQDQRRLGEGAPTCGGSTKVSSSSAPYPPLPTHTL
GPLLQAYDESLRDKDALLAQYNTEFEHFTGELKRALEENTKLLQSQEQLR
RDLGGWREERVCLQAQLGVCRSKAEAQTRKTDLAKEKLVEVMHCYEQRMQ
TLILDMDHLQAAYARTKSELAALKSASSAAPAAVAPPVPAESEALHQCKA
LLEQLRQEHARERTCLQEQLQATTARAASLVRSTEKAKHSRDRLKARLRM
ALQWAQKLEAGQAEVRDTYEAVRRLEVLVQHKESQLRGLHARNAEEMDKL
RHKLQQKEETICALLRGKMERRPAVD*

BS15323.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:30:37
Subject Length Description Subject Range Query Range Score Percent Strand
Cep89-PA 476 CG8214-PA 1..476 1..476 2413 100 Plus