Clone Sequence Records
BS15323.3prime Sequence
789 bp (688 high quality bases) assembled on 2006-10-24
> BS15323.3prime
ATGGTCTAGAAAGCTTTTAATCCACCGCCGGTCTGCGCTCCATTTTGCCT
CTAAGCAGCGCACATATCGTTTCCTCCTTCTGCTGTAACTTATGACGCAA
CTTGTCCATTTCTTCTGCATTCCGGGCATGCAATCCGCGCAATTGTGACT
CCTTGTGCTGGACAAGTACTTCCAGGCGGCGTACCGCCTCGTAGGTATCG
CGCACCTCAGCCTGCCCTGCCTCCAGCTTTTGGGCCCACTGCAGCGCCAT
TCTCAGACGAGCCTTAAGCCGATCTCTGCTGTGCTTGGCTTTTTCCGTGC
TGCGGACCAGTGAAGCTGCCCGTGCGGTGGTGGCTTGCAGCTGTTCCTGG
AGGCAAGTTCGCTCTCTCGCATGCTCCTGCCGCAATTGCTCAAGCAGGGC
TTTGCACTGATGCAGTGCCTCGGATTCGGCGGGAACTGGAGGAGCAACCG
CAGCGGGCGCCGCCGATGAGGCACTTTTAAGCGCGGCTAGTTCGGATTTA
GTTCGCGCGTAGGCCGCCTGCAGGTGATCCATGTCCAGGATCAGCGTCTG
CATGCGCTGTTCGTAGCAGTGCATCACTTCCACCAGCTTCTCCTTGGCCA
AGTCCGTCTTGCGAGTTTGCGCCTCCGCTTTGGAGCGGCATACTCCTAGT
TGGGCCTGCAGACACACTCGCTCCTCTCGCCAGCCGCCGAGGTCACGACG
CAATTGCTCCTGGGACTGCAGCAGCTTTGTGTTCTCCTCCAGGGCTCGCT
TTAGTTCCCCAGTGAAGTGCTCCAACTCTGTGTTATATT
BS15323.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:18:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8214-PA | 1431 | CG8214-RA | 659..1431 | 789..17 | 3815 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:23:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cep89-RA | 1483 | CG8214-RA | 664..1436 | 789..17 | 3835 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:23:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15687435..15688140 | 17..722 | 3515 | 99.9 | Plus |
2R | 25286936 | 2R | 15688204..15688271 | 722..789 | 325 | 98.5 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:23:31 has no hits.
BS15323.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:23:27 Download gff for
BS15323.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8214-PA | 659..1431 | 17..789 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:59:07 Download gff for
BS15323.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8214-PA | 659..1431 | 17..789 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:35:53 Download gff for
BS15323.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8214-RA | 664..1439 | 13..789 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:51:00 Download gff for
BS15323.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cep89-RA | 664..1439 | 13..789 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:51:00 Download gff for
BS15323.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15687432..15688139 | 13..721 | 99 | <- | Plus |
2R | 15688204..15688271 | 722..789 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:35:53 Download gff for
BS15323.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11574937..11575644 | 13..721 | 99 | <- | Plus |
arm_2R | 11575709..11575776 | 722..789 | 98 | | Plus |
BS15323.5prime Sequence
872 bp (780 high quality bases) assembled on 2006-10-24
> BS15323.5prime
GAAGTTATCAGTCGACATGAGCACGCGAAATGTGATGATAACGGACCTGG
ATCAGCCAGATCCGAACCAGCAGCAGCATCATCAAAATCCCAAAAAGAAC
CGAAAGGTTCTCCAAACTCTGTCGGGCAATTTTAATCGTCGGTCACGAAG
CGTGGAGGTGGAAGTAAAGCGACAGGATAACTTGGGTGTTGTCCACAAAG
ATCGCAAAAAGGATCGTTCGTTTAACTCGCTGTTGCAAGCCAAGGACCAG
CAGTTGGAGCAGCTTGTGCAGCGATTAGCCACCCTGCATCGATACAACGA
CCAATTCGCCAAGGAGAATGACCAACTACGCAAGGACAGCGGCCAGCTGG
AGCGGCGTCTTACGGAGGCGGAGCAGCAGGTTGCCAATTGCAGCCGCTGT
CAACAGCTCGGCCAACGACTGGACACCGTTCTTGCACAGAATAGAACATT
AGCCGGCGACGTGGACATGCTGAAGACGCTCGTCTTCAGGCTGAACGTGC
AAATTGAGAGTTACCAGGATCAACGGCGTCTCGGTGAGGGTGCACCCACT
TGTGGAGGATCAACGAAAGTCAGCTCGTCATCTGCTCCGTATCCGCCACT
GCCCACTCACACGTTGGGACCACTCCTGCAGGCATACGATGAATCTCTAA
GGGATAAGGACGCTCTTTTGGCTCAATATAACACAGAGTTCGAGCACTTC
ACTGGGGAACTAAAGCGAGCCCTGGAGGAGAACACAAAGCTGCTGCAGTC
CCAGGAGCAACTGCGTCGTGACCTCGGCGGCTGGCGAGAGGAGCGAGTGT
GTCTGCAGGCCCAACTAGGAGTATGCCGCTCCAAAGCGGAGGCGCAAACT
CGCAAGACGGACTTGGGCCAAG
BS15323.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:18:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8214-PA | 1431 | CG8214-RA | 1..850 | 17..866 | 4250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:28:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cep89-RA | 1483 | CG8214-RA | 6..860 | 17..872 | 4255 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:28:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15688204..15688714 | 742..232 | 2555 | 100 | Minus |
2R | 25286936 | 2R | 15688765..15688980 | 232..17 | 1080 | 100 | Minus |
2R | 25286936 | 2R | 15688016..15688140 | 866..742 | 625 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 16:28:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6846..6900 | 45..99 | 113 | 67.3 | Plus |
BS15323.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:23:28 Download gff for
BS15323.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8214-PA | 1..855 | 17..872 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:59:08 Download gff for
BS15323.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8214-PA | 1..855 | 17..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:40:21 Download gff for
BS15323.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8214-RA | 1..860 | 13..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:32:10 Download gff for
BS15323.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cep89-RA | 1..860 | 13..872 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:32:10 Download gff for
BS15323.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15688765..15688980 | 17..232 | 100 | | Minus |
2R | 15688011..15688139 | 743..872 | 99 | <- | Minus |
2R | 15688204..15688713 | 233..742 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:40:21 Download gff for
BS15323.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11575516..11575644 | 743..872 | 99 | <- | Minus |
arm_2R | 11575709..11576218 | 233..742 | 100 | <- | Minus |
arm_2R | 11576270..11576485 | 17..232 | 100 | | Minus |
BS15323.complete Sequence
1463 bp assembled on 2006-11-01
GenBank Submission: FJ637916
> BS15323.complete
GAAGTTATCAGTCGACATGAGCACGCGAAATGTGATGATAACGGACCTGG
ATCAGCCAGATCCGAACCAGCAGCAGCATCATCAAAATCCCAAAAAGAAC
CGAAAGGTTCTCCAAACTCTGTCGGGCAATTTTAATCGTCGGTCACGAAG
CGTGGAGGTGGAAGTAAAGCGACAGGATAACTTGGGTGTTGTCCACAAAG
ATCGCAAAAAGGATCGTTCGTTTAACTCGCTGTTGCAAGCCAAGGACCAG
CAGTTGGAGCAGCTTGTGCAGCGATTAGCCACCCTGCATCGATACAACGA
CCAATTCGCCAAGGAGAATGACCAACTACGCAAGGACAGCGGCCAGCTGG
AGCGGCGTCTTACGGAGGCGGAGCAGCAGGTTGCCAATTGCAGCCGCTGT
CAACAGCTCGGCCAACGACTGGACACCGTTCTTGCACAGAATAGAACATT
AGCCGGCGACGTGGACATGCTGAAGACGCTCGTCTTCAGGCTGAACGTGC
AAATTGAGAGTTACCAGGATCAACGGCGTCTCGGTGAGGGTGCACCCACT
TGTGGAGGATCAACGAAAGTCAGCTCGTCATCTGCTCCGTATCCGCCACT
GCCCACTCACACGTTGGGACCACTCCTGCAGGCATACGATGAATCTCTAA
GGGATAAGGACGCTCTTTTGGCTCAATATAACACAGAGTTCGAGCACTTC
ACTGGGGAACTAAAGCGAGCCCTGGAGGAGAACACAAAGCTGCTGCAGTC
CCAGGAGCAACTGCGTCGTGACCTCGGCGGCTGGCGAGAGGAGCGAGTGT
GTCTGCAGGCCCAACTAGGAGTATGCCGCTCCAAAGCGGAGGCGCAAACT
CGCAAGACGGACTTGGCCAAGGAGAAGCTGGTGGAAGTGATGCACTGCTA
CGAACAGCGCATGCAGACGCTGATCCTGGACATGGATCACCTGCAGGCGG
CCTACGCGCGAACTAAATCCGAACTAGCCGCGCTTAAAAGTGCCTCATCG
GCGGCGCCCGCTGCGGTTGCTCCTCCAGTTCCCGCCGAATCCGAGGCACT
GCATCAGTGCAAAGCCCTGCTTGAGCAATTGCGGCAGGAGCATGCGAGAG
AGCGAACTTGCCTCCAGGAACAGCTGCAAGCCACCACCGCACGGGCAGCT
TCACTGGTCCGCAGCACGGAAAAAGCCAAGCACAGCAGAGATCGGCTTAA
GGCTCGTCTGAGAATGGCGCTGCAGTGGGCCCAAAAGCTGGAGGCAGGGC
AGGCTGAGGTGCGCGATACCTACGAGGCGGTACGCCGCCTGGAAGTACTT
GTCCAGCACAAGGAGTCACAATTGCGCGGATTGCATGCCCGGAATGCAGA
AGAAATGGACAAGTTGCGTCATAAGTTACAGCAGAAGGAGGAAACGATAT
GTGCGCTGCTTAGAGGCAAAATGGAGCGCAGACCGGCGGTGGATTAAAAG
CTTTCTAGACCAT
BS15323.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:15:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cep89-RA | 1431 | CG8214-PA | 1..1431 | 17..1447 | 7155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:15:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cep89-RA | 1483 | CG8214-RA | 6..1436 | 17..1447 | 7155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:15:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15687435..15688140 | 1447..742 | 3530 | 100 | Minus |
2R | 25286936 | 2R | 15688204..15688714 | 742..232 | 2555 | 100 | Minus |
2R | 25286936 | 2R | 15688765..15688980 | 232..17 | 1080 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 13:15:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6846..6900 | 45..99 | 113 | 67.3 | Plus |
BS15323.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:33:03 Download gff for
BS15323.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8214-RA | 1..1431 | 17..1447 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:05:38 Download gff for
BS15323.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8214-RA | 1..1439 | 13..1451 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:28:19 Download gff for
BS15323.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8214-RA | 6..1434 | 17..1445 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:33:03 Download gff for
BS15323.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8214-RA | 1..1439 | 13..1451 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:14:20 Download gff for
BS15323.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cep89-RA | 6..1434 | 17..1445 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:14:20 Download gff for
BS15323.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15687437..15688139 | 743..1445 | 100 | <- | Minus |
2R | 15688204..15688713 | 233..742 | 100 | <- | Minus |
2R | 15688765..15688980 | 17..232 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:28:19 Download gff for
BS15323.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11574942..11575644 | 743..1445 | 100 | <- | Minus |
arm_2R | 11575709..11576218 | 233..742 | 100 | <- | Minus |
arm_2R | 11576270..11576485 | 17..232 | 100 | | Minus |
BS15323.pep Sequence
Translation from 16 to 1446
> BS15323.pep
MSTRNVMITDLDQPDPNQQQHHQNPKKNRKVLQTLSGNFNRRSRSVEVEV
KRQDNLGVVHKDRKKDRSFNSLLQAKDQQLEQLVQRLATLHRYNDQFAKE
NDQLRKDSGQLERRLTEAEQQVANCSRCQQLGQRLDTVLAQNRTLAGDVD
MLKTLVFRLNVQIESYQDQRRLGEGAPTCGGSTKVSSSSAPYPPLPTHTL
GPLLQAYDESLRDKDALLAQYNTEFEHFTGELKRALEENTKLLQSQEQLR
RDLGGWREERVCLQAQLGVCRSKAEAQTRKTDLAKEKLVEVMHCYEQRMQ
TLILDMDHLQAAYARTKSELAALKSASSAAPAAVAPPVPAESEALHQCKA
LLEQLRQEHARERTCLQEQLQATTARAASLVRSTEKAKHSRDRLKARLRM
ALQWAQKLEAGQAEVRDTYEAVRRLEVLVQHKESQLRGLHARNAEEMDKL
RHKLQQKEETICALLRGKMERRPAVD*
BS15323.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:30:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cep89-PA | 476 | CG8214-PA | 1..476 | 1..476 | 2413 | 100 | Plus |