Clone Sequence Records
BS15327.3prime Sequence
811 bp (734 high quality bases) assembled on 2006-10-24
> BS15327.3prime
ATGGTCTAGAAAGCTTTTAGTTGTCGCAGACCTGCTTTCCGCTTCCAATG
CACGCAGCATATGCCATCAGATGGGGAATGGTGCTCTGCTGCATCACTCC
GGTGAAGAGGTGACTCTGAGGTCCGGAGGCGAATATGCCCACGTCCTCGC
CGGAGTGGACGCCCTGATCCTTGGGAATGTAGCTGGGGGTGATGGCGTCG
TCCGAGCCAAGGATATCGTCCAAAGGAATGCGCTGTCCGTTCTCATCCAG
ATACTGATTGGGTCCAGCTGCATAGTTCAGAACCGAGTACTGCACTCCGT
TGATGTCGGTGTCATGTTGATTGATTCCCAGGATGGGTGTTCCTCTGCCA
GGATAGCCGGCTATGCTGACGGCGTGTCCGTGATCAGCGGTCACCACAAT
TAAAGTGTCCTCGATGTCCGTCATGTCACGGGCCAACTGAATGGCCTTCT
CGAATTCCAGGGCCTCATCCAGAGCATAGCCAGCTTTGGTGTAGTGGTTG
CCATAGTCAATTAGACCACCTTCAATGAACGCAAAGTATCCGTGTTCCTT
GTTCTGGCTGAGCTTCTTGATGGTCACCTCAGTGAGTTCGGAGAGGGTTG
GCTGGTAGGTGTCATCAGCCTCCAAGTGGAAGTTCATTAGCTTGGACTGG
AAGAGACCAATGACACTGGACACTGCTGACACGTTCAGTTTAAGCAGCTG
ATTGCGATTGGTGACCAAGACGCCTCCATCGTGGAGTCCCTGCCAGCGGG
AAAGCAGATTCACTCCGTCGGATCGCTCACCAGGGTTTCCGTGAGAATCA
ACGATGGAGTT
BS15327.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:18:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3264-PA | 1602 | CG3264-RA | 808..1602 | 811..17 | 3975 | 100 | Minus |
| CG3290-PA | 1617 | CG3290-RA | 1219..1413 | 400..206 | 475 | 89.7 | Minus |
| CG3290-PA | 1617 | CG3290-RA | 1501..1556 | 118..63 | 230 | 96.4 | Minus |
| CG3290-PA | 1617 | CG3290-RA | 844..932 | 778..690 | 195 | 88.7 | Minus |
| CG3292-PA | 1632 | CG3292-RA | 1528..1586 | 115..57 | 195 | 93.2 | Minus |
| CG3290-PA | 1617 | CG3290-RA | 1148..1199 | 471..420 | 185 | 94.2 | Minus |
| CG3290-PA | 1617 | CG3290-RA | 1011..1067 | 611..555 | 135 | 89.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:27:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3264-RB | 2182 | CG3264-RB | 850..1644 | 811..17 | 3975 | 100 | Minus |
| CG3264-RA | 1737 | CG3264-RA | 850..1644 | 811..17 | 3975 | 100 | Minus |
| CG3290-RA | 1762 | CG3290-RA | 858..1612 | 782..25 | 1830 | 83.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:27:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22209002..22209510 | 17..525 | 2530 | 99.8 | Plus |
| 2R | 25286936 | 2R | 22209559..22209854 | 516..811 | 1480 | 100 | Plus |
| 2R | 25286936 | 2R | 22206155..22206651 | 25..521 | 1315 | 84.3 | Plus |
| 2R | 25286936 | 2R | 22206717..22206978 | 518..782 | 510 | 80.4 | Plus |
| 2R | 25286936 | 2R | 22204014..22204141 | 228..355 | 295 | 82 | Plus |
| 2R | 25286936 | 2R | 22203766..22203872 | 45..151 | 280 | 84.1 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:27:53 has no hits.
BS15327.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:23:34 Download gff for
BS15327.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3264-PA | 808..1602 | 17..811 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:59:16 Download gff for
BS15327.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3264-PA | 808..1602 | 17..811 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:22:13 Download gff for
BS15327.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3264-RA | 827..1625 | 14..811 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:07:25 Download gff for
BS15327.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3264-RA | 850..1648 | 14..811 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:07:25 Download gff for
BS15327.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22208998..22209504 | 14..519 | 99 | <- | Plus |
| 2R | 22209563..22209854 | 520..811 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:22:13 Download gff for
BS15327.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18096503..18097009 | 14..519 | 99 | <- | Plus |
| arm_2R | 18097068..18097359 | 520..811 | 100 | | Plus |
BS15327.5prime Sequence
864 bp (844 high quality bases) assembled on 2006-10-24
> BS15327.5prime
GAAGTTATCAGTCGACATGGGTTCCTCCCAGCGGCAGTTAGTACTCCCAA
TCCTGCTCCTTCTGGCCTTGGCCGGAACAGCACTGTGTGGAGTACAGGAG
GTGCACAACGTTCTGGAGTTGACAGGACAGGCAGCGAATAAGTTGAAGTT
TTCCACGGATGTGGCTACCGAAAAGTACACTCCCCCGGAGGAGATGGATC
CCCAGTACTGGTACAACATCGCCGACGAGGAGATCACCAAGAGGCTACAA
CTACCACAACCCAATTCCCAGAAGGCCAAGAACATTATTATGTTCCTCGG
AGATGGCATGCCTCTCTCCACCGTTGCAGCTGCTCGCATCCTGAAAGGAC
AACGACAAGGAAACACCGGTGAGGAATCCTCCCTGAGCTTCGAGCGATTC
CCCTACACGGGTTTGAGCAGGACCTACTGCTCCAATGCCCAAGTGCCCGA
CTCCGCCTGCACTGCCACCGCGTATTTGTGCGGCGTAAAGACCAACATCG
TCAATATCGGAGTAAGTGCAGCAGTGGAATACAATAACTGCACCGCCAGC
CAGGATCCCGCGAACCGCCTGACCTCCATCGCCGAGTGGGCCCAGAATGC
TGGAAAGTCCACTGGTATTGTGACCACCACCACCCTGACCCACGCCAGTC
CTTCGGGAGCATATGCAAAGACAGCCAACCGCATGTGGGAATGCGACACG
GATGTGACCAGCTATGGTGTGGATGCCAATTCCTGCATTGACATGGCCAC
CCAGCTTGTCACCCAGACGCCCGGCAAGAACTTCGAGGTCATGTTCGGCG
GCGGAATGGGCAAGTTCCTCCCCAACTCCATCGTTGATTCTCACGGAAAC
CCTGGTGAGCGATC
BS15327.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:18:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3264-PA | 1602 | CG3264-RA | 1..848 | 17..864 | 4240 | 100 | Plus |
| CG3290-PA | 1617 | CG3290-RA | 523..715 | 536..728 | 490 | 90.1 | Plus |
| CG3290-PA | 1617 | CG3290-RA | 314..485 | 327..498 | 310 | 87.2 | Plus |
| CG3290-PA | 1617 | CG3290-RA | 727..812 | 740..825 | 305 | 94.1 | Plus |
| CG3290-PA | 1617 | CG3290-RA | 160..251 | 173..264 | 235 | 90.2 | Plus |
| CG3292-PA | 1632 | CG3292-RA | 400..485 | 398..483 | 230 | 90.6 | Plus |
| CG3292-PA | 1632 | CG3292-RA | 589..674 | 587..672 | 205 | 89.5 | Plus |
| CG3292-PA | 1632 | CG3292-RA | 781..837 | 770..826 | 135 | 89.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:57:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3264-RB | 2182 | CG3264-RB | 43..890 | 17..864 | 4240 | 100 | Plus |
| CG3264-RA | 1737 | CG3264-RA | 43..890 | 17..864 | 4240 | 100 | Plus |
| CG3290-RA | 1762 | CG3290-RA | 62..830 | 57..825 | 2120 | 85 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:56:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22209814..22210257 | 864..421 | 2220 | 100 | Minus |
| 2R | 25286936 | 2R | 22210319..22210723 | 421..17 | 2025 | 100 | Minus |
| 2R | 25286936 | 2R | 22207006..22207410 | 825..421 | 1290 | 87.9 | Minus |
| 2R | 25286936 | 2R | 22207563..22207926 | 420..57 | 845 | 82.1 | Minus |
| 2R | 25286936 | 2R | 22204592..22205006 | 826..421 | 615 | 77.1 | Minus |
| 2R | 25286936 | 2R | 22205070..22205220 | 421..271 | 260 | 78.1 | Minus |
| 3R | 32079331 | 3R | 9495317..9495455 | 388..526 | 260 | 79.1 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:56:56 has no hits.
BS15327.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:23:35 Download gff for
BS15327.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3264-PA | 1..848 | 17..864 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:59:18 Download gff for
BS15327.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3264-PA | 1..848 | 17..864 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 06:30:34 Download gff for
BS15327.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3264-RA | 17..867 | 14..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:54:47 Download gff for
BS15327.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3264-RA | 40..890 | 14..864 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:54:47 Download gff for
BS15327.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22209814..22210256 | 422..864 | 100 | <- | Minus |
| 2R | 22210319..22210726 | 14..421 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 06:30:34 Download gff for
BS15327.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18097319..18097761 | 422..864 | 100 | <- | Minus |
| arm_2R | 18097824..18098231 | 14..421 | 99 | | Minus |
BS15327.complete Sequence
1634 bp assembled on 2006-11-01
GenBank Submission: FJ637917
> BS15327.complete
GAAGTTATCAGTCGACATGGGTTCCTCCCAGCGGCAGTTAGTACTCCCAA
TCCTGCTCCTTCTGGCCTTGGCCGGAACAGCACTGTGTGGAGTACAGGAG
GTGCACAACGTTCTGGAGTTGACAGGACAGGCAGCGAATAAGTTGAAGTT
TTCCACGGATGTGGCTACCGAAAAGTACACTCCCCCGGAGGAGATGGATC
CCCAGTACTGGTACAACATCGCCGACGAGGAGATCACCAAGAGGCTACAA
CTACCACAACCCAATTCCCAGAAGGCCAAGAACATTATTATGTTCCTCGG
AGATGGCATGCCTCTCTCCACCGTTGCAGCTGCTCGCATCCTGAAAGGAC
AACGACAAGGAAACACCGGTGAGGAATCCTCCCTGAGCTTCGAGCGATTC
CCCTACACGGGTTTGAGCAGGACCTACTGCTCCAATGCCCAAGTGCCCGA
CTCCGCCTGCACTGCCACCGCGTATTTGTGCGGCGTAAAGACCAACATCG
TCAATATCGGAGTAAGTGCAGCAGTGGAATACAATAACTGCACCGCCAGC
CAGGATCCCGCGAACCGCCTGACCTCCATCGCCGAGTGGGCCCAGAATGC
TGGAAAGTCCACTGGTATTGTGACCACCACCACCCTGACCCACGCCAGTC
CTTCGGGAGCATATGCAAAGACAGCCAACCGCATGTGGGAATGCGACACG
GATGTGACCAGCTATGGTGTGGATGCCAATTCCTGCATTGACATGGCCAC
CCAGCTTGTCACCCAGACGCCCGGCAAGAACTTCGAGGTCATGTTCGGCG
GCGGAATGGGCAAGTTCCTCCCCAACTCCATCGTTGATTCTCACGGAAAC
CCTGGTGAGCGATCCGACGGAGTGAATCTGCTTTCCCGCTGGCAGGGACT
CCACGATGGAGGCGTCTTGGTCACCAATCGCAATCAGCTGCTTAAACTGA
ACGTGTCAGCAGTGTCCAGTGTCATTGGTCTCTTCCAGTCCAAGCTAATG
AACTTCCACTTGGAGGCTGATGACACCTACCAGCCAACCCTCTCCGAACT
CACTGAGGTGACCATCAAGAAGCTCAGCCAGAACAAGGAACACGGATACT
TTGCGTTCATTGAAGGTGGTCTAATTGACTATGGCAACCACTACACCAAA
GCTGGCTATGCTCTGGATGAGGCCCTGGAATTCGAGAAGGCCATTCAGTT
GGCCCGTGACATGACGGACATCGAGGACACTTTAATTGTGGTGACCGCTG
ATCACGGACACGCCGTCAGCATAGCCGGCTATCCTGGCAGAGGAACACCC
ATCCTGGGAATCAATCAACATGACACCGACATCAACGGAGTGCAGTACTC
GGTTCTGAACTATGCAGCTGGACCCAATCAGTATCTGGATGAGAACGGAC
AGCGCATTCCTTTGGACGATATCCTTGGCTCGGACGACGCCATCACCCCC
AGCTACATTCCCAAGGATCAGGGCGTCCACTCCGGCGAGGACGTGGGCAT
ATTCGCCTCCGGACCTCAGAGTCACCTCTTCACCGGAGTGATGCAGCAGA
GCACCATTCCCCATCTGATGGCATATGCTGCGTGCATTGGAAGCGGAAAG
CAGGTCTGCGACAACTAAAAGCTTTCTAGACCAT
BS15327.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:59:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3264-RB | 1602 | CG3264-PB | 1..1602 | 17..1618 | 8010 | 100 | Plus |
| CG3264-RA | 1602 | CG3264-PA | 1..1602 | 17..1618 | 8010 | 100 | Plus |
| CG3290-RA | 1617 | CG3290-PA | 44..1594 | 57..1610 | 3865 | 83.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:59:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3264-RB | 2182 | CG3264-RB | 43..1644 | 17..1618 | 8010 | 100 | Plus |
| CG3264-RA | 1737 | CG3264-RA | 43..1644 | 17..1618 | 8010 | 100 | Plus |
| CG3290-RA | 1762 | CG3290-RA | 62..1612 | 57..1610 | 3865 | 83.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:59:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22209559..22210257 | 1119..421 | 3495 | 100 | Minus |
| 2R | 25286936 | 2R | 22209002..22209510 | 1618..1110 | 2530 | 99.8 | Minus |
| 2R | 25286936 | 2R | 22210319..22210723 | 421..17 | 2025 | 100 | Minus |
| 2R | 25286936 | 2R | 22206717..22207410 | 1117..421 | 1740 | 83.6 | Minus |
| 2R | 25286936 | 2R | 22206155..22206651 | 1610..1114 | 1315 | 84.3 | Minus |
| 2R | 25286936 | 2R | 22207563..22207926 | 420..57 | 845 | 82.1 | Minus |
| 2R | 25286936 | 2R | 22204518..22205006 | 900..421 | 655 | 76.1 | Minus |
| 2R | 25286936 | 2R | 22204014..22204141 | 1407..1280 | 295 | 82 | Minus |
| 2R | 25286936 | 2R | 22203766..22203872 | 1590..1484 | 280 | 84.1 | Minus |
| 2R | 25286936 | 2R | 22205070..22205220 | 421..271 | 260 | 78.1 | Minus |
| 3R | 32079331 | 3R | 9495317..9495455 | 388..526 | 260 | 79.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:59:41 has no hits.
BS15327.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:33:07 Download gff for
BS15327.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3264-RA | 1..1602 | 17..1618 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:05:43 Download gff for
BS15327.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3264-RA | 17..1625 | 14..1621 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:17 Download gff for
BS15327.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3264-RA | 20..1619 | 17..1616 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:33:07 Download gff for
BS15327.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3264-RA | 17..1625 | 14..1621 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:32:31 Download gff for
BS15327.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3264-RA | 43..1642 | 17..1616 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:32:31 Download gff for
BS15327.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22209004..22209504 | 1116..1616 | 100 | <- | Minus |
| 2R | 22209563..22210256 | 422..1115 | 100 | <- | Minus |
| 2R | 22210319..22210723 | 17..421 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:17 Download gff for
BS15327.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18096509..18097009 | 1116..1616 | 100 | <- | Minus |
| arm_2R | 18097068..18097761 | 422..1115 | 100 | <- | Minus |
| arm_2R | 18097824..18098228 | 17..421 | 100 | | Minus |
BS15327.pep Sequence
Translation from 16 to 1617
> BS15327.pep
MGSSQRQLVLPILLLLALAGTALCGVQEVHNVLELTGQAANKLKFSTDVA
TEKYTPPEEMDPQYWYNIADEEITKRLQLPQPNSQKAKNIIMFLGDGMPL
STVAAARILKGQRQGNTGEESSLSFERFPYTGLSRTYCSNAQVPDSACTA
TAYLCGVKTNIVNIGVSAAVEYNNCTASQDPANRLTSIAEWAQNAGKSTG
IVTTTTLTHASPSGAYAKTANRMWECDTDVTSYGVDANSCIDMATQLVTQ
TPGKNFEVMFGGGMGKFLPNSIVDSHGNPGERSDGVNLLSRWQGLHDGGV
LVTNRNQLLKLNVSAVSSVIGLFQSKLMNFHLEADDTYQPTLSELTEVTI
KKLSQNKEHGYFAFIEGGLIDYGNHYTKAGYALDEALEFEKAIQLARDMT
DIEDTLIVVTADHGHAVSIAGYPGRGTPILGINQHDTDINGVQYSVLNYA
AGPNQYLDENGQRIPLDDILGSDDAITPSYIPKDQGVHSGEDVGIFASGP
QSHLFTGVMQQSTIPHLMAYAACIGSGKQVCDN*
BS15327.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:30:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3264-PB | 533 | CG3264-PB | 1..533 | 1..533 | 2780 | 100 | Plus |
| CG3264-PA | 533 | CG3264-PA | 1..533 | 1..533 | 2780 | 100 | Plus |
| CG3290-PA | 538 | CG3290-PA | 1..531 | 1..531 | 2396 | 85.9 | Plus |
| CG3292-PA | 543 | CG3292-PA | 9..541 | 13..533 | 1772 | 63.7 | Plus |
| CG5656-PA | 523 | CG5656-PA | 8..514 | 39..532 | 1085 | 44.5 | Plus |
