Clone BS15328 Report

Search the DGRC for BS15328

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:153
Well:28
Vector:pDNR-Dual
Associated Gene/TranscriptCG5506-RA
Protein status:BS15328.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15328.3prime Sequence

573 bp (573 high quality bases) assembled on 2006-10-24

> BS15328.3prime
ATGGTCTAGAAAGCTTTTAGTAGTATGTTCCATTGCCTTTAGGCTGGGCC
ACCAGAACTTCATATTTGTCGAACTTTCGCAGGGCCAAGCTCTCGTGCTT
GATGATGCACACCTTCTGGCTGCTAAGGAGCAGGGTGCCGATTAGGATGC
CTCCATCGGTCTTAGCACGGCAGCAGAACACCCGCTCATTTTTGACCGTC
GTGCCCACGGCAACGGCTCCCTTTTCATAGAATCCATCGAAGCTCCTGAC
CCACACGTAATTTACATCCCGCTCAGCCACTAGGATGTCGTAGACGAGGA
GCTTCGAGGATGTGGTTTCCGTATTGAAGTAAGCAGTACCAGTTTCCGCA
ACAACTCGAGCCGGCAGGATGCTATTGGAGTACTTAACACGACCAACATA
GGTGGTAAATCCGTAGGGATCGAAGCCACCCACAACGGCATTATAGGGAA
TAACGTAGGACAGGTTACCAGCCTTCCACACGTGCTCGGTATCATAAGTC
GAGGGAACCGCGTAGGCAACTGCAAACAGGGCCAAAACTACACAGACAAG
TTTGTACATGTCGACTGATAACT

BS15328.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:18:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG5506-PA 543 CG5506-RA 1..543 559..17 2715 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:09:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG5506-RA 661 CG5506-RA 32..575 559..16 2720 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:09:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17883735..17884212 16..493 2390 100 Plus
3L 28110227 3L 17884279..17884345 493..559 335 100 Plus
Blast to na_te.dros performed on 2015-02-13 07:09:36 has no hits.

BS15328.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:23:37 Download gff for BS15328.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5506-PA 1..543 17..559 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:59:19 Download gff for BS15328.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5506-PA 1..543 17..559 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:51:17 Download gff for BS15328.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5506-RA 23..580 7..568 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:31:11 Download gff for BS15328.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5506-RA 23..580 7..568 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:31:11 Download gff for BS15328.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 17883727..17884211 7..492 99 <- Plus
3L 17884279..17884354 493..568 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:51:17 Download gff for BS15328.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17876827..17877311 7..492 99 <- Plus
arm_3L 17877379..17877454 493..568 96   Plus

BS15328.5prime Sequence

573 bp (573 high quality bases) assembled on 2006-10-24

> BS15328.5prime
GAAGTTATCATTCGACATGTACAAACTTGTCTGTGTAGTTTTGGCCCTGT
TTGCAGTTGCCTACGCGGTTCCCTCGACTTATGATACCGAGCACGTGTGG
AAGGCTGGTAACCTGTCCTACGTTATTCCCTATAATGCCGTTGTGGGTGG
CTTCGATCCCTACGGATTTACCACCTATGTTGGTCGTGTTAAGTACTCCA
ATAGCATCCTGCCGGCTCGAGTTGTTGCGGAAACTGGTACTGCTTACTTC
AATACGGAAACCACATCCTCGAAGCTCCTCGTCTACGACATCCTAGTGGC
TGAGCGGGATGTAAATTACGTGTGGGTCAGGAGCTTCGATGGATTCTATG
AAAAGGGAGCCGTTGCCGTGGGCACGACGGTCAAAAATGAGCGGGTGTTC
TGCTGCCGTGCTAAGACCGATGGAGGCATCCTAATCGGCACCCTGCTCCT
TAGCAGCCAGAAGGTGTGCATCATCAAGCACGAGAGCTTGGCCCTGCGAA
AGTTCGACAAATATGAAGTTCTGGTGGCCCAGCCTAAAGGCAATGGAACA
TACTACTAAAAGCTTTCTAGACC

BS15328.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:18:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG5506-PA 543 CG5506-RA 1..543 17..559 2715 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:20:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG5506-RA 661 CG5506-RA 32..575 17..560 2720 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:20:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17883735..17884212 560..83 2390 100 Minus
3L 28110227 3L 17884279..17884345 83..17 335 100 Minus
Blast to na_te.dros performed on 2015-02-11 23:20:28 has no hits.

BS15328.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:23:38 Download gff for BS15328.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5506-PA 1..543 17..559 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:59:21 Download gff for BS15328.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5506-PA 1..543 17..559 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:35:46 Download gff for BS15328.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5506-RA 23..580 8..569 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:44:26 Download gff for BS15328.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5506-RA 23..580 8..569 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:44:26 Download gff for BS15328.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 17883727..17884211 84..569 99 <- Minus
3L 17884279..17884354 8..83 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:35:46 Download gff for BS15328.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17877379..17877454 8..83 94   Minus
arm_3L 17876827..17877311 84..569 99 <- Minus

BS15328.complete Sequence

575 bp assembled on 2006-11-01

GenBank Submission: FJ637918

> BS15328.complete
GAAGTTATCAGTCGACATGTACAAACTTGTCTGTGTAGTTTTGGCCCTGT
TTGCAGTTGCCTACGCGGTTCCCTCGACTTATGATACCGAGCACGTGTGG
AAGGCTGGTAACCTGTCCTACGTTATTCCCTATAATGCCGTTGTGGGTGG
CTTCGATCCCTACGGATTTACCACCTATGTTGGTCGTGTTAAGTACTCCA
ATAGCATCCTGCCGGCTCGAGTTGTTGCGGAAACTGGTACTGCTTACTTC
AATACGGAAACCACATCCTCGAAGCTCCTCGTCTACGACATCCTAGTGGC
TGAGCGGGATGTAAATTACGTGTGGGTCAGGAGCTTCGATGGATTCTATG
AAAAGGGAGCCGTTGCCGTGGGCACGACGGTCAAAAATGAGCGGGTGTTC
TGCTGCCGTGCTAAGACCGATGGAGGCATCCTAATCGGCACCCTGCTCCT
TAGCAGCCAGAAGGTGTGCATCATCAAGCACGAGAGCTTGGCCCTGCGAA
AGTTCGACAAATATGAAGTTCTGGTGGCCCAGCCTAAAGGCAATGGAACA
TACTACTAAAAGCTTTCTAGACCAT

BS15328.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:52:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG5506-RA 543 CG5506-PA 1..543 17..559 2715 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:52:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG5506-RA 661 CG5506-RA 32..575 17..560 2720 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:52:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17883735..17884212 560..83 2390 100 Minus
3L 28110227 3L 17884279..17884345 83..17 335 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:52:37 has no hits.

BS15328.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:33:08 Download gff for BS15328.complete
Subject Subject Range Query Range Percent Splice Strand
CG5506-RA 1..543 17..559 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:05:45 Download gff for BS15328.complete
Subject Subject Range Query Range Percent Splice Strand
CG5506-RA 21..578 8..569 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:07 Download gff for BS15328.complete
Subject Subject Range Query Range Percent Splice Strand
CG5506-RA 32..572 17..557 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:33:08 Download gff for BS15328.complete
Subject Subject Range Query Range Percent Splice Strand
CG5506-RA 7..564 8..569 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:29:11 Download gff for BS15328.complete
Subject Subject Range Query Range Percent Splice Strand
CG5506-RA 32..572 17..557 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:29:11 Download gff for BS15328.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17883738..17884211 84..557 100 <- Minus
3L 17884279..17884345 17..83 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:07 Download gff for BS15328.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17876838..17877311 84..557 100 <- Minus
arm_3L 17877379..17877445 17..83 100   Minus

BS15328.pep Sequence

Translation from 16 to 558

> BS15328.pep
MYKLVCVVLALFAVAYAVPSTYDTEHVWKAGNLSYVIPYNAVVGGFDPYG
FTTYVGRVKYSNSILPARVVAETGTAYFNTETTSSKLLVYDILVAERDVN
YVWVRSFDGFYEKGAVAVGTTVKNERVFCCRAKTDGGILIGTLLLSSQKV
CIIKHESLALRKFDKYEVLVAQPKGNGTYY*

BS15328.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:30:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG5506-PA 180 CG5506-PA 1..180 1..180 938 100 Plus
CG16775-PB 191 CG16775-PB 9..175 4..172 400 48.5 Plus
CG32633-PB 285 CG32633-PB 14..145 37..174 165 35.5 Plus
CG32633-PA 285 CG32633-PA 14..145 37..174 165 35.5 Plus
CG31086-PB 148 CG31086-PB 14..141 37..169 155 33.1 Plus