Clone Sequence Records
BS15328.3prime Sequence
573 bp (573 high quality bases) assembled on 2006-10-24
> BS15328.3prime
ATGGTCTAGAAAGCTTTTAGTAGTATGTTCCATTGCCTTTAGGCTGGGCC
ACCAGAACTTCATATTTGTCGAACTTTCGCAGGGCCAAGCTCTCGTGCTT
GATGATGCACACCTTCTGGCTGCTAAGGAGCAGGGTGCCGATTAGGATGC
CTCCATCGGTCTTAGCACGGCAGCAGAACACCCGCTCATTTTTGACCGTC
GTGCCCACGGCAACGGCTCCCTTTTCATAGAATCCATCGAAGCTCCTGAC
CCACACGTAATTTACATCCCGCTCAGCCACTAGGATGTCGTAGACGAGGA
GCTTCGAGGATGTGGTTTCCGTATTGAAGTAAGCAGTACCAGTTTCCGCA
ACAACTCGAGCCGGCAGGATGCTATTGGAGTACTTAACACGACCAACATA
GGTGGTAAATCCGTAGGGATCGAAGCCACCCACAACGGCATTATAGGGAA
TAACGTAGGACAGGTTACCAGCCTTCCACACGTGCTCGGTATCATAAGTC
GAGGGAACCGCGTAGGCAACTGCAAACAGGGCCAAAACTACACAGACAAG
TTTGTACATGTCGACTGATAACT
BS15328.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:18:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5506-PA | 543 | CG5506-RA | 1..543 | 559..17 | 2715 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:09:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5506-RA | 661 | CG5506-RA | 32..575 | 559..16 | 2720 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:09:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17883735..17884212 | 16..493 | 2390 | 100 | Plus |
3L | 28110227 | 3L | 17884279..17884345 | 493..559 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 07:09:36 has no hits.
BS15328.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:23:37 Download gff for
BS15328.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5506-PA | 1..543 | 17..559 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:59:19 Download gff for
BS15328.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5506-PA | 1..543 | 17..559 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:51:17 Download gff for
BS15328.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5506-RA | 23..580 | 7..568 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:31:11 Download gff for
BS15328.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5506-RA | 23..580 | 7..568 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:31:11 Download gff for
BS15328.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17883727..17884211 | 7..492 | 99 | <- | Plus |
3L | 17884279..17884354 | 493..568 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:51:17 Download gff for
BS15328.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17876827..17877311 | 7..492 | 99 | <- | Plus |
arm_3L | 17877379..17877454 | 493..568 | 96 | | Plus |
BS15328.5prime Sequence
573 bp (573 high quality bases) assembled on 2006-10-24
> BS15328.5prime
GAAGTTATCATTCGACATGTACAAACTTGTCTGTGTAGTTTTGGCCCTGT
TTGCAGTTGCCTACGCGGTTCCCTCGACTTATGATACCGAGCACGTGTGG
AAGGCTGGTAACCTGTCCTACGTTATTCCCTATAATGCCGTTGTGGGTGG
CTTCGATCCCTACGGATTTACCACCTATGTTGGTCGTGTTAAGTACTCCA
ATAGCATCCTGCCGGCTCGAGTTGTTGCGGAAACTGGTACTGCTTACTTC
AATACGGAAACCACATCCTCGAAGCTCCTCGTCTACGACATCCTAGTGGC
TGAGCGGGATGTAAATTACGTGTGGGTCAGGAGCTTCGATGGATTCTATG
AAAAGGGAGCCGTTGCCGTGGGCACGACGGTCAAAAATGAGCGGGTGTTC
TGCTGCCGTGCTAAGACCGATGGAGGCATCCTAATCGGCACCCTGCTCCT
TAGCAGCCAGAAGGTGTGCATCATCAAGCACGAGAGCTTGGCCCTGCGAA
AGTTCGACAAATATGAAGTTCTGGTGGCCCAGCCTAAAGGCAATGGAACA
TACTACTAAAAGCTTTCTAGACC
BS15328.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:18:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5506-PA | 543 | CG5506-RA | 1..543 | 17..559 | 2715 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:20:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5506-RA | 661 | CG5506-RA | 32..575 | 17..560 | 2720 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:20:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17883735..17884212 | 560..83 | 2390 | 100 | Minus |
3L | 28110227 | 3L | 17884279..17884345 | 83..17 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:20:28 has no hits.
BS15328.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:23:38 Download gff for
BS15328.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5506-PA | 1..543 | 17..559 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:59:21 Download gff for
BS15328.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5506-PA | 1..543 | 17..559 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:35:46 Download gff for
BS15328.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5506-RA | 23..580 | 8..569 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:44:26 Download gff for
BS15328.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5506-RA | 23..580 | 8..569 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:44:26 Download gff for
BS15328.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17883727..17884211 | 84..569 | 99 | <- | Minus |
3L | 17884279..17884354 | 8..83 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:35:46 Download gff for
BS15328.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17877379..17877454 | 8..83 | 94 | | Minus |
arm_3L | 17876827..17877311 | 84..569 | 99 | <- | Minus |
BS15328.complete Sequence
575 bp assembled on 2006-11-01
GenBank Submission: FJ637918
> BS15328.complete
GAAGTTATCAGTCGACATGTACAAACTTGTCTGTGTAGTTTTGGCCCTGT
TTGCAGTTGCCTACGCGGTTCCCTCGACTTATGATACCGAGCACGTGTGG
AAGGCTGGTAACCTGTCCTACGTTATTCCCTATAATGCCGTTGTGGGTGG
CTTCGATCCCTACGGATTTACCACCTATGTTGGTCGTGTTAAGTACTCCA
ATAGCATCCTGCCGGCTCGAGTTGTTGCGGAAACTGGTACTGCTTACTTC
AATACGGAAACCACATCCTCGAAGCTCCTCGTCTACGACATCCTAGTGGC
TGAGCGGGATGTAAATTACGTGTGGGTCAGGAGCTTCGATGGATTCTATG
AAAAGGGAGCCGTTGCCGTGGGCACGACGGTCAAAAATGAGCGGGTGTTC
TGCTGCCGTGCTAAGACCGATGGAGGCATCCTAATCGGCACCCTGCTCCT
TAGCAGCCAGAAGGTGTGCATCATCAAGCACGAGAGCTTGGCCCTGCGAA
AGTTCGACAAATATGAAGTTCTGGTGGCCCAGCCTAAAGGCAATGGAACA
TACTACTAAAAGCTTTCTAGACCAT
BS15328.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:52:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5506-RA | 543 | CG5506-PA | 1..543 | 17..559 | 2715 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:52:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5506-RA | 661 | CG5506-RA | 32..575 | 17..560 | 2720 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:52:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17883735..17884212 | 560..83 | 2390 | 100 | Minus |
3L | 28110227 | 3L | 17884279..17884345 | 83..17 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:52:37 has no hits.
BS15328.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:33:08 Download gff for
BS15328.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5506-RA | 1..543 | 17..559 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:05:45 Download gff for
BS15328.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5506-RA | 21..578 | 8..569 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:07 Download gff for
BS15328.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5506-RA | 32..572 | 17..557 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:33:08 Download gff for
BS15328.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5506-RA | 7..564 | 8..569 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:29:11 Download gff for
BS15328.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5506-RA | 32..572 | 17..557 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:29:11 Download gff for
BS15328.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17883738..17884211 | 84..557 | 100 | <- | Minus |
3L | 17884279..17884345 | 17..83 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:07 Download gff for
BS15328.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17876838..17877311 | 84..557 | 100 | <- | Minus |
arm_3L | 17877379..17877445 | 17..83 | 100 | | Minus |
BS15328.pep Sequence
Translation from 16 to 558
> BS15328.pep
MYKLVCVVLALFAVAYAVPSTYDTEHVWKAGNLSYVIPYNAVVGGFDPYG
FTTYVGRVKYSNSILPARVVAETGTAYFNTETTSSKLLVYDILVAERDVN
YVWVRSFDGFYEKGAVAVGTTVKNERVFCCRAKTDGGILIGTLLLSSQKV
CIIKHESLALRKFDKYEVLVAQPKGNGTYY*
BS15328.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:30:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5506-PA | 180 | CG5506-PA | 1..180 | 1..180 | 938 | 100 | Plus |
CG16775-PB | 191 | CG16775-PB | 9..175 | 4..172 | 400 | 48.5 | Plus |
CG32633-PB | 285 | CG32633-PB | 14..145 | 37..174 | 165 | 35.5 | Plus |
CG32633-PA | 285 | CG32633-PA | 14..145 | 37..174 | 165 | 35.5 | Plus |
CG31086-PB | 148 | CG31086-PB | 14..141 | 37..169 | 155 | 33.1 | Plus |