Clone Sequence Records
BS15331.3prime Sequence
552 bp (552 high quality bases) assembled on 2006-10-24
> BS15331.3prime
ATGGTCTAGAAAGCTTTCAGTAGCGGCCCCTACGATTTGTCCCCGCCCCC
CTGGGCGTGGTCGTCGTGATGGAGGGGTTACCATGGGCATCCAGACGGGA
TTGAAACTGAGATTGGAACTGGGAACTGGAGACGCCATCAGATGCCGCGG
ATGCCGCAGATGCCTCGCTGACCATGGGCACCTCGATGGAACGCGGCAGA
TTGGGATATTCCTGCGGCGTGATCGACTGATTCTGTCGATAGCCAAACTG
ATCGGCATTGTAGAAGACGGTGATGTAACGCCCGTCGGTCATCCGATAGG
CATAGTAGCCCACAACCATCAGGGTCTTTACATCGTTGATCTTAACGAAA
TATCCACGTTCATAGCGAGCGGTTCCATCGTCCAACTCGAATCGATACTC
GTAGCTGCCGTCGGGATATCGGTTATCGAATCGATCTAGTAATCGCGCAC
TGGGCGCCGACTCTTTGATCTGCTGGGCGGAAATGAGGGTGGCGCTCAGC
AGGAAGATGGCGAACAGGATCGAACCGGAAGTGGCCATGTCGACTGATAA
CT
BS15331.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:18:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15757-PA | 522 | CG15757-RA | 1..522 | 538..17 | 2610 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:37:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr12A-RA | 858 | CG15757-RA | 132..653 | 538..17 | 2610 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:37:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13543774..13544086 | 538..226 | 1565 | 100 | Minus |
X | 23542271 | X | 13544494..13544702 | 225..17 | 1045 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:37:23 has no hits.
BS15331.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:23:44 Download gff for
BS15331.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15757-PA | 1..522 | 17..538 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:59:29 Download gff for
BS15331.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15757-PA | 1..522 | 17..538 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:30:43 Download gff for
BS15331.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr12A-RA | 125..658 | 11..545 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:25:05 Download gff for
BS15331.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr12A-RA | 125..658 | 11..545 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:25:05 Download gff for
BS15331.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13544494..13544707 | 11..225 | 99 | | Minus |
X | 13543767..13544086 | 226..545 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:30:43 Download gff for
BS15331.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13437800..13438119 | 226..545 | 99 | -> | Minus |
arm_X | 13438527..13438740 | 11..225 | 99 | | Minus |
BS15331.5prime Sequence
552 bp (552 high quality bases) assembled on 2006-10-24
> BS15331.5prime
GAAGTTATCAGTCGACATGGCCACTTCCGGTTCGATCCTGTTCGCCATCT
TCCTGCTGAGCGCCACCCTCATTTCCGCCCAGCAGATCAAAGAGTCGGCG
CCCAGTGCGCGATTACTAGATCGATTCGATAACCGATATCCCGACGGCAG
CTACGAGTATCGATTCGAGTTGGACGATGGAACCGCTCGCTATGAACGTG
GATATTTCGTTAAGATCAACGATGTAAAGACCCTGATGGTTGTGGGCTAC
TATGCCTATCGGATGACCGACGGGCGTTACATCACCGTCTTCTACAATGC
CGATCAGTTTGGCTATCGACAGAATCAGTCGATCACGCCGCAGGAATATC
CCAATCTGCCGCGTTCCATCGAGGTGCCCATGGTCAGCGAGGCATCTGCG
GCATCCGCGGCATCTGATGGCGTCTCCAGTTCCCAGTTCCAATCTCAGTT
TCAATCCCGTCTGGATGCCCATGGTAACCCCTCCATCACGACGACCACGC
CCAGGGGGGCGGGGACAAATCGTAGGGGCCGCTACTGAAAGCTTTCTAGA
CC
BS15331.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:18:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15757-PA | 522 | CG15757-RA | 1..522 | 17..538 | 2610 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:25:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr12A-RA | 858 | CG15757-RA | 132..653 | 17..538 | 2610 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:25:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13543774..13544086 | 17..329 | 1565 | 100 | Plus |
X | 23542271 | X | 13544494..13544702 | 330..538 | 1045 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:25:25 has no hits.
BS15331.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:23:45 Download gff for
BS15331.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15757-PA | 1..522 | 17..538 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:59:30 Download gff for
BS15331.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15757-PA | 1..522 | 17..538 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:57:13 Download gff for
BS15331.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr12A-RA | 125..658 | 10..544 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:02:30 Download gff for
BS15331.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr12A-RA | 125..658 | 10..544 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:02:30 Download gff for
BS15331.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13543767..13544086 | 10..329 | 99 | -> | Plus |
X | 13544494..13544707 | 330..544 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:57:13 Download gff for
BS15331.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13437800..13438119 | 10..329 | 99 | -> | Plus |
arm_X | 13438527..13438740 | 330..544 | 99 | | Plus |
BS15331.complete Sequence
554 bp assembled on 2006-11-01
GenBank Submission: FJ638867
> BS15331.complete
GAAGTTATCAGTCGACATGGCCACTTCCGGTTCGATCCTGTTCGCCATCT
TCCTGCTGAGCGCCACCCTCATTTCCGCCCAGCAGATCAAAGAGTCGGCG
CCCAGTGCGCGATTACTAGATCGATTCGATAACCGATATCCCGACGGCAG
CTACGAGTATCGATTCGAGTTGGACGATGGAACCGCTCGCTATGAACGTG
GATATTTCGTTAAGATCAACGATGTAAAGACCCTGATGGTTGTGGGCTAC
TATGCCTATCGGATGACCGACGGGCGTTACATCACCGTCTTCTACAATGC
CGATCAGTTTGGCTATCGACAGAATCAGTCGATCACGCCGCAGGAATATC
CCAATCTGCCGCGTTCCATCGAGGTGCCCATGGTCAGCGAGGCATCTGCG
GCATCCGCGGCATCTGATGGCGTCTCCAGTTCCCAGTTCCAATCTCAGTT
TCAATCCCGTCTGGATGCCCATGGTAACCCCTCCATCACGACGACCACGC
CCAGGGGGGCGGGGACAAATCGTAGGGGCCGCTACTGAAAGCTTTCTAGA
CCAT
BS15331.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:27:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr12A-RA | 522 | CG15757-PA | 1..522 | 17..538 | 2610 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:27:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr12A-RA | 858 | CG15757-RA | 132..653 | 17..538 | 2610 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:27:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13543774..13544086 | 17..329 | 1565 | 100 | Plus |
X | 23542271 | X | 13544494..13544702 | 330..538 | 1045 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:27:38 has no hits.
BS15331.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:32:44 Download gff for
BS15331.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr12A-RA | 1..522 | 17..538 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:05:13 Download gff for
BS15331.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr12A-RA | 125..658 | 10..544 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:20 Download gff for
BS15331.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr12A-RA | 132..652 | 17..537 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:32:44 Download gff for
BS15331.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr12A-RA | 125..658 | 10..544 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:19:01 Download gff for
BS15331.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr12A-RA | 132..652 | 17..537 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:19:01 Download gff for
BS15331.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13543774..13544086 | 17..329 | 100 | -> | Plus |
X | 13544494..13544701 | 330..537 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:20 Download gff for
BS15331.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13437807..13438119 | 17..329 | 100 | -> | Plus |
arm_X | 13438527..13438734 | 330..537 | 100 | | Plus |
BS15331.pep Sequence
Translation from 16 to 537
> BS15331.pep
MATSGSILFAIFLLSATLISAQQIKESAPSARLLDRFDNRYPDGSYEYRF
ELDDGTARYERGYFVKINDVKTLMVVGYYAYRMTDGRYITVFYNADQFGY
RQNQSITPQEYPNLPRSIEVPMVSEASAASAASDGVSSSQFQSQFQSRLD
AHGNPSITTTTPRGAGTNRRGRY*
BS15331.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:31:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr12A-PA | 173 | CG15757-PA | 1..173 | 1..173 | 886 | 100 | Plus |
CG15756-PA | 298 | CG15756-PA | 80..185 | 18..123 | 223 | 41.5 | Plus |