Clone BS15331 Report

Search the DGRC for BS15331

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:153
Well:31
Vector:pDNR-Dual
Associated Gene/TranscriptCpr12A-RA
Protein status:BS15331.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15331.3prime Sequence

552 bp (552 high quality bases) assembled on 2006-10-24

> BS15331.3prime
ATGGTCTAGAAAGCTTTCAGTAGCGGCCCCTACGATTTGTCCCCGCCCCC
CTGGGCGTGGTCGTCGTGATGGAGGGGTTACCATGGGCATCCAGACGGGA
TTGAAACTGAGATTGGAACTGGGAACTGGAGACGCCATCAGATGCCGCGG
ATGCCGCAGATGCCTCGCTGACCATGGGCACCTCGATGGAACGCGGCAGA
TTGGGATATTCCTGCGGCGTGATCGACTGATTCTGTCGATAGCCAAACTG
ATCGGCATTGTAGAAGACGGTGATGTAACGCCCGTCGGTCATCCGATAGG
CATAGTAGCCCACAACCATCAGGGTCTTTACATCGTTGATCTTAACGAAA
TATCCACGTTCATAGCGAGCGGTTCCATCGTCCAACTCGAATCGATACTC
GTAGCTGCCGTCGGGATATCGGTTATCGAATCGATCTAGTAATCGCGCAC
TGGGCGCCGACTCTTTGATCTGCTGGGCGGAAATGAGGGTGGCGCTCAGC
AGGAAGATGGCGAACAGGATCGAACCGGAAGTGGCCATGTCGACTGATAA
CT

BS15331.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:18:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG15757-PA 522 CG15757-RA 1..522 538..17 2610 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:37:27
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr12A-RA 858 CG15757-RA 132..653 538..17 2610 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:37:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13543774..13544086 538..226 1565 100 Minus
X 23542271 X 13544494..13544702 225..17 1045 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:37:23 has no hits.

BS15331.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:23:44 Download gff for BS15331.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15757-PA 1..522 17..538 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:59:29 Download gff for BS15331.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15757-PA 1..522 17..538 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:30:43 Download gff for BS15331.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr12A-RA 125..658 11..545 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:25:05 Download gff for BS15331.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr12A-RA 125..658 11..545 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:25:05 Download gff for BS15331.3prime
Subject Subject Range Query Range Percent Splice Strand
X 13544494..13544707 11..225 99   Minus
X 13543767..13544086 226..545 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:30:43 Download gff for BS15331.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13437800..13438119 226..545 99 -> Minus
arm_X 13438527..13438740 11..225 99   Minus

BS15331.5prime Sequence

552 bp (552 high quality bases) assembled on 2006-10-24

> BS15331.5prime
GAAGTTATCAGTCGACATGGCCACTTCCGGTTCGATCCTGTTCGCCATCT
TCCTGCTGAGCGCCACCCTCATTTCCGCCCAGCAGATCAAAGAGTCGGCG
CCCAGTGCGCGATTACTAGATCGATTCGATAACCGATATCCCGACGGCAG
CTACGAGTATCGATTCGAGTTGGACGATGGAACCGCTCGCTATGAACGTG
GATATTTCGTTAAGATCAACGATGTAAAGACCCTGATGGTTGTGGGCTAC
TATGCCTATCGGATGACCGACGGGCGTTACATCACCGTCTTCTACAATGC
CGATCAGTTTGGCTATCGACAGAATCAGTCGATCACGCCGCAGGAATATC
CCAATCTGCCGCGTTCCATCGAGGTGCCCATGGTCAGCGAGGCATCTGCG
GCATCCGCGGCATCTGATGGCGTCTCCAGTTCCCAGTTCCAATCTCAGTT
TCAATCCCGTCTGGATGCCCATGGTAACCCCTCCATCACGACGACCACGC
CCAGGGGGGCGGGGACAAATCGTAGGGGCCGCTACTGAAAGCTTTCTAGA
CC

BS15331.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:18:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG15757-PA 522 CG15757-RA 1..522 17..538 2610 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:25:26
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr12A-RA 858 CG15757-RA 132..653 17..538 2610 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:25:24
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13543774..13544086 17..329 1565 100 Plus
X 23542271 X 13544494..13544702 330..538 1045 100 Plus
Blast to na_te.dros performed on 2015-02-12 10:25:25 has no hits.

BS15331.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:23:45 Download gff for BS15331.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15757-PA 1..522 17..538 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:59:30 Download gff for BS15331.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15757-PA 1..522 17..538 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:57:13 Download gff for BS15331.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr12A-RA 125..658 10..544 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:02:30 Download gff for BS15331.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr12A-RA 125..658 10..544 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:02:30 Download gff for BS15331.5prime
Subject Subject Range Query Range Percent Splice Strand
X 13543767..13544086 10..329 99 -> Plus
X 13544494..13544707 330..544 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:57:13 Download gff for BS15331.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13437800..13438119 10..329 99 -> Plus
arm_X 13438527..13438740 330..544 99   Plus

BS15331.complete Sequence

554 bp assembled on 2006-11-01

GenBank Submission: FJ638867

> BS15331.complete
GAAGTTATCAGTCGACATGGCCACTTCCGGTTCGATCCTGTTCGCCATCT
TCCTGCTGAGCGCCACCCTCATTTCCGCCCAGCAGATCAAAGAGTCGGCG
CCCAGTGCGCGATTACTAGATCGATTCGATAACCGATATCCCGACGGCAG
CTACGAGTATCGATTCGAGTTGGACGATGGAACCGCTCGCTATGAACGTG
GATATTTCGTTAAGATCAACGATGTAAAGACCCTGATGGTTGTGGGCTAC
TATGCCTATCGGATGACCGACGGGCGTTACATCACCGTCTTCTACAATGC
CGATCAGTTTGGCTATCGACAGAATCAGTCGATCACGCCGCAGGAATATC
CCAATCTGCCGCGTTCCATCGAGGTGCCCATGGTCAGCGAGGCATCTGCG
GCATCCGCGGCATCTGATGGCGTCTCCAGTTCCCAGTTCCAATCTCAGTT
TCAATCCCGTCTGGATGCCCATGGTAACCCCTCCATCACGACGACCACGC
CCAGGGGGGCGGGGACAAATCGTAGGGGCCGCTACTGAAAGCTTTCTAGA
CCAT

BS15331.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:27:39
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr12A-RA 522 CG15757-PA 1..522 17..538 2610 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:27:40
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr12A-RA 858 CG15757-RA 132..653 17..538 2610 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:27:38
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13543774..13544086 17..329 1565 100 Plus
X 23542271 X 13544494..13544702 330..538 1045 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:27:38 has no hits.

BS15331.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:32:44 Download gff for BS15331.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr12A-RA 1..522 17..538 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:05:13 Download gff for BS15331.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr12A-RA 125..658 10..544 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:20 Download gff for BS15331.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr12A-RA 132..652 17..537 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:32:44 Download gff for BS15331.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr12A-RA 125..658 10..544 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:19:01 Download gff for BS15331.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr12A-RA 132..652 17..537 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:19:01 Download gff for BS15331.complete
Subject Subject Range Query Range Percent Splice Strand
X 13543774..13544086 17..329 100 -> Plus
X 13544494..13544701 330..537 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:20 Download gff for BS15331.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 13437807..13438119 17..329 100 -> Plus
arm_X 13438527..13438734 330..537 100   Plus

BS15331.pep Sequence

Translation from 16 to 537

> BS15331.pep
MATSGSILFAIFLLSATLISAQQIKESAPSARLLDRFDNRYPDGSYEYRF
ELDDGTARYERGYFVKINDVKTLMVVGYYAYRMTDGRYITVFYNADQFGY
RQNQSITPQEYPNLPRSIEVPMVSEASAASAASDGVSSSQFQSQFQSRLD
AHGNPSITTTTPRGAGTNRRGRY*

BS15331.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:31:00
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr12A-PA 173 CG15757-PA 1..173 1..173 886 100 Plus
CG15756-PA 298 CG15756-PA 80..185 18..123 223 41.5 Plus