Clone Sequence Records
BS15334.3prime Sequence
624 bp (624 high quality bases) assembled on 2006-10-24
> BS15334.3prime
ATGGTCTAGAAAGCTTTCAAACTTCTTTGGTGTACCTCGTTATTGCAGTC
ACTGCGTCTGCGGTCGCGACTGATTTCTCCAGCCTAAACTTTTGCACCTC
GTCAAAGTAATCCTTTGCCTCCTGTCTGTGATAAAGTTTCGCCAAGTCAG
TGCAAGTTTTGCCAACACCATCCAAAGCCGCCAAGTCTGCGCCGTGCGTA
ACAAGGACTTTGATGAGCTCCATGCTAGCGTTCATAACCACTGCGCGCAT
AAGAAGGGTCCAGCCGCAGACGTCTCTGGCCTCAGCATTCGCTCCCGCTT
CGAGAGCGAACTTGACTATTTCCAGTTGATTGGCATCAACGGCGCAGTGG
GCGGGAGTCATGCCGTTACTGTCCGTCGCCTCCAGGCGGGCCTTCTTGTT
CAGCAGAATGCGAGCGGACGGCAGGTGACCGTAGTAAAAAGCCAGGTGCA
GCGGGGTCCGGCCGCTTCCCGGATCTCCAATGTGGACGCTGCAACCGGCC
GAGAGCAGCAAGTCAATGATGCACATCTCGCCCTGAATAATGGCATTGGC
AAGTGGCAGGAATCCGTTGGAAGCCGGATATTCCATTAGGCTCGGGCGAC
GACGCAGCATGTCGACTGATAACT
BS15334.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:18:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9766-PB | 594 | CG9766-RB | 1..594 | 610..17 | 2970 | 100 | Minus |
CG9766-PA | 594 | CG9766-RA | 1..594 | 610..17 | 2970 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:33:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9766-RC | 1502 | CG9766-RC | 565..1158 | 610..17 | 2970 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:33:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4269565..4269792 | 17..244 | 1140 | 100 | Plus |
3R | 32079331 | 3R | 4269848..4270052 | 241..445 | 1025 | 100 | Plus |
3R | 32079331 | 3R | 4270109..4270273 | 446..610 | 825 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 03:33:50 has no hits.
BS15334.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:23:50 Download gff for
BS15334.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9766-PA | 1..594 | 17..610 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:59:38 Download gff for
BS15334.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9766-PA | 1..594 | 17..610 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:06:17 Download gff for
BS15334.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9766-RB | 245..840 | 17..613 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:42:39 Download gff for
BS15334.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9766-RC | 563..1158 | 17..613 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:42:39 Download gff for
BS15334.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4269565..4269788 | 17..240 | 100 | <- | Plus |
3R | 4269848..4270052 | 241..445 | 100 | <- | Plus |
3R | 4270109..4270275 | 446..613 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:06:17 Download gff for
BS15334.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 95287..95510 | 17..240 | 100 | <- | Plus |
arm_3R | 95570..95774 | 241..445 | 100 | <- | Plus |
arm_3R | 95831..95997 | 446..613 | 99 | | Plus |
BS15334.5prime Sequence
624 bp (624 high quality bases) assembled on 2006-10-24
> BS15334.5prime
GAAGTTATCAGTCGACATGCTGCGTCGTCGCCCGAGCCTAATGGAATATC
CGGCTTCCAACGGATTCCTGCCACTTGCCAATGCCATTATTCAGGGCGAG
ATGTGCATCATTGACTTGCTGCTCTCGGCCGGTTGCAGCGTCCACATTGG
AGATCCGGGAAGCGGCCGGACCCCGCTGCACCTGGCTTTTTACTACGGTC
ACCTGCCGTCCGCTCGCATTCTGCTGAACAAGAAGGCCCGCCTGGAGGCG
ACGGACAGTAACGGCATGACTCCCGCCCACTGCGCCGTTGATGCCAATCA
ACTGGAAATAGTCAAGTTCGCTCTCGAAGCGGGAGCGAATGCTGAGGCCA
GAGACGTCTGCGGCTGGACCCTTCTTATGCGCGCAGTGGTTATGAACGCT
AGCATGGAGCTCATCAAAGTCCTTGTTACGCACGGCGCAGACTTGGCGGC
TTTGGATGGTGTTGGCAAAACTTGCACTGACTTGGCGAAACTTTATCACA
GACAGGAGGCAAAGGATTACTTTGACGAGGTGCAAAAGTTTAGGCTGGAG
AAATCAGTCGCGACCGCAGACGCAGTGACTGCAATAACGAGGTACACCAA
AGAAGTTTGAAAGCTTTCTAGACC
BS15334.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:18:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9766-PB | 594 | CG9766-RB | 1..594 | 17..610 | 2970 | 100 | Plus |
CG9766-PA | 594 | CG9766-RA | 1..594 | 17..610 | 2970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:07:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9766-RC | 1502 | CG9766-RC | 565..1158 | 17..610 | 2970 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:07:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4269565..4269792 | 610..383 | 1140 | 100 | Minus |
3R | 32079331 | 3R | 4269848..4270052 | 386..182 | 1025 | 100 | Minus |
3R | 32079331 | 3R | 4270109..4270273 | 181..17 | 825 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:07:39 has no hits.
BS15334.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:23:51 Download gff for
BS15334.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9766-PA | 1..594 | 17..610 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:59:39 Download gff for
BS15334.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9766-PA | 1..594 | 17..610 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:24:40 Download gff for
BS15334.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9766-RB | 245..840 | 14..610 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:43:10 Download gff for
BS15334.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9766-RC | 563..1158 | 14..610 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:43:10 Download gff for
BS15334.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4269848..4270052 | 182..386 | 100 | <- | Minus |
3R | 4270109..4270275 | 14..181 | 99 | | Minus |
3R | 4269565..4269788 | 387..610 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:24:40 Download gff for
BS15334.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 95287..95510 | 387..610 | 100 | <- | Minus |
arm_3R | 95570..95774 | 182..386 | 100 | <- | Minus |
arm_3R | 95831..95997 | 14..181 | 99 | | Minus |
BS15334.complete Sequence
626 bp assembled on 2006-11-01
GenBank Submission: FJ637919
> BS15334.complete
GAAGTTATCAGTCGACATGCTGCGTCGTCGCCCGAGCCTAATGGAATATC
CGGCTTCCAACGGATTCCTGCCACTTGCCAATGCCATTATTCAGGGCGAG
ATGTGCATCATTGACTTGCTGCTCTCGGCCGGTTGCAGCGTCCACATTGG
AGATCCGGGAAGCGGCCGGACCCCGCTGCACCTGGCTTTTTACTACGGTC
ACCTGCCGTCCGCTCGCATTCTGCTGAACAAGAAGGCCCGCCTGGAGGCG
ACGGACAGTAACGGCATGACTCCCGCCCACTGCGCCGTTGATGCCAATCA
ACTGGAAATAGTCAAGTTCGCTCTCGAAGCGGGAGCGAATGCTGAGGCCA
GAGACGTCTGCGGCTGGACCCTTCTTATGCGCGCAGTGGTTATGAACGCT
AGCATGGAGCTCATCAAAGTCCTTGTTACGCACGGCGCAGACTTGGCGGC
TTTGGATGGTGTTGGCAAAACTTGCACTGACTTGGCGAAACTTTATCACA
GACAGGAGGCAAAGGATTACTTTGACGAGGTGCAAAAGTTTAGGCTGGAG
AAATCAGTCGCGACCGCAGACGCAGTGACTGCAATAACGAGGTACACCAA
AGAAGTTTGAAAGCTTTCTAGACCAT
BS15334.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:41:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9766-RC | 1023 | CG9766-PC | 430..1023 | 17..610 | 2970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:41:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9766-RC | 1502 | CG9766-RC | 565..1158 | 17..610 | 2970 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:41:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4269565..4269792 | 610..383 | 1140 | 100 | Minus |
3R | 32079331 | 3R | 4269848..4270052 | 386..182 | 1025 | 100 | Minus |
3R | 32079331 | 3R | 4270109..4270273 | 181..17 | 825 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:41:14 has no hits.
BS15334.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:32:45 Download gff for
BS15334.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9766-RC | 428..1023 | 14..610 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:05:15 Download gff for
BS15334.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9766-RC | 428..1023 | 14..610 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:57:27 Download gff for
BS15334.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9766-RB | 247..839 | 17..609 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:32:45 Download gff for
BS15334.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9766-RC | 428..1023 | 14..610 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:48 Download gff for
BS15334.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9766-RC | 565..1157 | 17..609 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:48 Download gff for
BS15334.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4269566..4269788 | 387..609 | 100 | <- | Minus |
3R | 4269848..4270052 | 182..386 | 100 | <- | Minus |
3R | 4270109..4270273 | 17..181 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:57:27 Download gff for
BS15334.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 95288..95510 | 387..609 | 100 | <- | Minus |
arm_3R | 95570..95774 | 182..386 | 100 | <- | Minus |
arm_3R | 95831..95995 | 17..181 | 100 | | Minus |
BS15334.pep Sequence
Translation from 16 to 609
> BS15334.pep
MLRRRPSLMEYPASNGFLPLANAIIQGEMCIIDLLLSAGCSVHIGDPGSG
RTPLHLAFYYGHLPSARILLNKKARLEATDSNGMTPAHCAVDANQLEIVK
FALEAGANAEARDVCGWTLLMRAVVMNASMELIKVLVTHGADLAALDGVG
KTCTDLAKLYHRQEAKDYFDEVQKFRLEKSVATADAVTAITRYTKEV*
BS15334.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:30:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9766-PC | 340 | CG9766-PC | 144..340 | 1..197 | 1009 | 100 | Plus |
nompC-PA | 1619 | CG11020-PA | 1009..1105 | 15..111 | 204 | 43.3 | Plus |
nompC-PD | 1726 | CG11020-PD | 1009..1105 | 15..111 | 204 | 43.3 | Plus |
nompC-PE | 1732 | CG11020-PE | 1009..1105 | 15..111 | 204 | 43.3 | Plus |
nompC-PF | 1735 | CG11020-PF | 1009..1105 | 15..111 | 204 | 43.3 | Plus |
nompC-PA | 1619 | CG11020-PA | 974..1101 | 15..141 | 161 | 34.9 | Plus |
nompC-PD | 1726 | CG11020-PD | 974..1101 | 15..141 | 161 | 34.9 | Plus |
nompC-PE | 1732 | CG11020-PE | 974..1101 | 15..141 | 161 | 34.9 | Plus |