Clone BS15334 Report

Search the DGRC for BS15334

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:153
Well:34
Vector:pDNR-Dual
Associated Gene/TranscriptCG9766-RA
Protein status:BS15334.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15334.3prime Sequence

624 bp (624 high quality bases) assembled on 2006-10-24

> BS15334.3prime
ATGGTCTAGAAAGCTTTCAAACTTCTTTGGTGTACCTCGTTATTGCAGTC
ACTGCGTCTGCGGTCGCGACTGATTTCTCCAGCCTAAACTTTTGCACCTC
GTCAAAGTAATCCTTTGCCTCCTGTCTGTGATAAAGTTTCGCCAAGTCAG
TGCAAGTTTTGCCAACACCATCCAAAGCCGCCAAGTCTGCGCCGTGCGTA
ACAAGGACTTTGATGAGCTCCATGCTAGCGTTCATAACCACTGCGCGCAT
AAGAAGGGTCCAGCCGCAGACGTCTCTGGCCTCAGCATTCGCTCCCGCTT
CGAGAGCGAACTTGACTATTTCCAGTTGATTGGCATCAACGGCGCAGTGG
GCGGGAGTCATGCCGTTACTGTCCGTCGCCTCCAGGCGGGCCTTCTTGTT
CAGCAGAATGCGAGCGGACGGCAGGTGACCGTAGTAAAAAGCCAGGTGCA
GCGGGGTCCGGCCGCTTCCCGGATCTCCAATGTGGACGCTGCAACCGGCC
GAGAGCAGCAAGTCAATGATGCACATCTCGCCCTGAATAATGGCATTGGC
AAGTGGCAGGAATCCGTTGGAAGCCGGATATTCCATTAGGCTCGGGCGAC
GACGCAGCATGTCGACTGATAACT

BS15334.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:18:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG9766-PB 594 CG9766-RB 1..594 610..17 2970 100 Minus
CG9766-PA 594 CG9766-RA 1..594 610..17 2970 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:33:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG9766-RC 1502 CG9766-RC 565..1158 610..17 2970 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:33:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4269565..4269792 17..244 1140 100 Plus
3R 32079331 3R 4269848..4270052 241..445 1025 100 Plus
3R 32079331 3R 4270109..4270273 446..610 825 100 Plus
Blast to na_te.dros performed on 2015-02-11 03:33:50 has no hits.

BS15334.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:23:50 Download gff for BS15334.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9766-PA 1..594 17..610 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:59:38 Download gff for BS15334.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9766-PA 1..594 17..610 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:06:17 Download gff for BS15334.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9766-RB 245..840 17..613 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:42:39 Download gff for BS15334.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9766-RC 563..1158 17..613 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:42:39 Download gff for BS15334.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 4269565..4269788 17..240 100 <- Plus
3R 4269848..4270052 241..445 100 <- Plus
3R 4270109..4270275 446..613 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:06:17 Download gff for BS15334.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 95287..95510 17..240 100 <- Plus
arm_3R 95570..95774 241..445 100 <- Plus
arm_3R 95831..95997 446..613 99   Plus

BS15334.5prime Sequence

624 bp (624 high quality bases) assembled on 2006-10-24

> BS15334.5prime
GAAGTTATCAGTCGACATGCTGCGTCGTCGCCCGAGCCTAATGGAATATC
CGGCTTCCAACGGATTCCTGCCACTTGCCAATGCCATTATTCAGGGCGAG
ATGTGCATCATTGACTTGCTGCTCTCGGCCGGTTGCAGCGTCCACATTGG
AGATCCGGGAAGCGGCCGGACCCCGCTGCACCTGGCTTTTTACTACGGTC
ACCTGCCGTCCGCTCGCATTCTGCTGAACAAGAAGGCCCGCCTGGAGGCG
ACGGACAGTAACGGCATGACTCCCGCCCACTGCGCCGTTGATGCCAATCA
ACTGGAAATAGTCAAGTTCGCTCTCGAAGCGGGAGCGAATGCTGAGGCCA
GAGACGTCTGCGGCTGGACCCTTCTTATGCGCGCAGTGGTTATGAACGCT
AGCATGGAGCTCATCAAAGTCCTTGTTACGCACGGCGCAGACTTGGCGGC
TTTGGATGGTGTTGGCAAAACTTGCACTGACTTGGCGAAACTTTATCACA
GACAGGAGGCAAAGGATTACTTTGACGAGGTGCAAAAGTTTAGGCTGGAG
AAATCAGTCGCGACCGCAGACGCAGTGACTGCAATAACGAGGTACACCAA
AGAAGTTTGAAAGCTTTCTAGACC

BS15334.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:18:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG9766-PB 594 CG9766-RB 1..594 17..610 2970 100 Plus
CG9766-PA 594 CG9766-RA 1..594 17..610 2970 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:07:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG9766-RC 1502 CG9766-RC 565..1158 17..610 2970 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:07:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4269565..4269792 610..383 1140 100 Minus
3R 32079331 3R 4269848..4270052 386..182 1025 100 Minus
3R 32079331 3R 4270109..4270273 181..17 825 100 Minus
Blast to na_te.dros performed on 2015-02-12 16:07:39 has no hits.

BS15334.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:23:51 Download gff for BS15334.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9766-PA 1..594 17..610 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:59:39 Download gff for BS15334.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9766-PA 1..594 17..610 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:24:40 Download gff for BS15334.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9766-RB 245..840 14..610 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:43:10 Download gff for BS15334.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9766-RC 563..1158 14..610 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:43:10 Download gff for BS15334.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 4269848..4270052 182..386 100 <- Minus
3R 4270109..4270275 14..181 99   Minus
3R 4269565..4269788 387..610 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:24:40 Download gff for BS15334.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 95287..95510 387..610 100 <- Minus
arm_3R 95570..95774 182..386 100 <- Minus
arm_3R 95831..95997 14..181 99   Minus

BS15334.complete Sequence

626 bp assembled on 2006-11-01

GenBank Submission: FJ637919

> BS15334.complete
GAAGTTATCAGTCGACATGCTGCGTCGTCGCCCGAGCCTAATGGAATATC
CGGCTTCCAACGGATTCCTGCCACTTGCCAATGCCATTATTCAGGGCGAG
ATGTGCATCATTGACTTGCTGCTCTCGGCCGGTTGCAGCGTCCACATTGG
AGATCCGGGAAGCGGCCGGACCCCGCTGCACCTGGCTTTTTACTACGGTC
ACCTGCCGTCCGCTCGCATTCTGCTGAACAAGAAGGCCCGCCTGGAGGCG
ACGGACAGTAACGGCATGACTCCCGCCCACTGCGCCGTTGATGCCAATCA
ACTGGAAATAGTCAAGTTCGCTCTCGAAGCGGGAGCGAATGCTGAGGCCA
GAGACGTCTGCGGCTGGACCCTTCTTATGCGCGCAGTGGTTATGAACGCT
AGCATGGAGCTCATCAAAGTCCTTGTTACGCACGGCGCAGACTTGGCGGC
TTTGGATGGTGTTGGCAAAACTTGCACTGACTTGGCGAAACTTTATCACA
GACAGGAGGCAAAGGATTACTTTGACGAGGTGCAAAAGTTTAGGCTGGAG
AAATCAGTCGCGACCGCAGACGCAGTGACTGCAATAACGAGGTACACCAA
AGAAGTTTGAAAGCTTTCTAGACCAT

BS15334.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:41:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG9766-RC 1023 CG9766-PC 430..1023 17..610 2970 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:41:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG9766-RC 1502 CG9766-RC 565..1158 17..610 2970 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:41:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4269565..4269792 610..383 1140 100 Minus
3R 32079331 3R 4269848..4270052 386..182 1025 100 Minus
3R 32079331 3R 4270109..4270273 181..17 825 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:41:14 has no hits.

BS15334.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:32:45 Download gff for BS15334.complete
Subject Subject Range Query Range Percent Splice Strand
CG9766-RC 428..1023 14..610 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:05:15 Download gff for BS15334.complete
Subject Subject Range Query Range Percent Splice Strand
CG9766-RC 428..1023 14..610 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:57:27 Download gff for BS15334.complete
Subject Subject Range Query Range Percent Splice Strand
CG9766-RB 247..839 17..609 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:32:45 Download gff for BS15334.complete
Subject Subject Range Query Range Percent Splice Strand
CG9766-RC 428..1023 14..610 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:48 Download gff for BS15334.complete
Subject Subject Range Query Range Percent Splice Strand
CG9766-RC 565..1157 17..609 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:48 Download gff for BS15334.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4269566..4269788 387..609 100 <- Minus
3R 4269848..4270052 182..386 100 <- Minus
3R 4270109..4270273 17..181 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:57:27 Download gff for BS15334.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 95288..95510 387..609 100 <- Minus
arm_3R 95570..95774 182..386 100 <- Minus
arm_3R 95831..95995 17..181 100   Minus

BS15334.pep Sequence

Translation from 16 to 609

> BS15334.pep
MLRRRPSLMEYPASNGFLPLANAIIQGEMCIIDLLLSAGCSVHIGDPGSG
RTPLHLAFYYGHLPSARILLNKKARLEATDSNGMTPAHCAVDANQLEIVK
FALEAGANAEARDVCGWTLLMRAVVMNASMELIKVLVTHGADLAALDGVG
KTCTDLAKLYHRQEAKDYFDEVQKFRLEKSVATADAVTAITRYTKEV*

BS15334.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:30:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG9766-PC 340 CG9766-PC 144..340 1..197 1009 100 Plus
nompC-PA 1619 CG11020-PA 1009..1105 15..111 204 43.3 Plus
nompC-PD 1726 CG11020-PD 1009..1105 15..111 204 43.3 Plus
nompC-PE 1732 CG11020-PE 1009..1105 15..111 204 43.3 Plus
nompC-PF 1735 CG11020-PF 1009..1105 15..111 204 43.3 Plus
nompC-PA 1619 CG11020-PA 974..1101 15..141 161 34.9 Plus
nompC-PD 1726 CG11020-PD 974..1101 15..141 161 34.9 Plus
nompC-PE 1732 CG11020-PE 974..1101 15..141 161 34.9 Plus