Clone BS15337 Report

Search the DGRC for BS15337

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:153
Well:37
Vector:pDNR-Dual
Associated Gene/TranscriptTsp42Ed-RA
Protein status:BS15337.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15337.3prime Sequence

715 bp (609 high quality bases) assembled on 2006-10-24

> BS15337.3prime
ATGGTCTAGAAAGCTTTTACCTAGTTCTGGCGTCTCTGCGAGTTGCGGGT
CTGATTGGCCAGGCAGCAGGCGAAAATGAAGGCCACAAGCTCAACAGCAG
TCACACCCAGGCCAGCGTACTTGATGATGCTCACGTTGGTGTCCCAGAAG
GAATCAACGGCCTTCAGGCAACTGGATCGCGTCATGACTTGGGTTAGTGC
GCAGGTTCCATTGGAGGGCGAGTCGCAGCAGGAGGCGGGATACGTAATGC
CGTAATCAGCGAAGCCGTTCAAGCCGCAGCACTTGAACGATCGCTGCAGT
GTGTCCATGAGGAGGGCATCGGTCTTGCGTTGATCCCATATGGTCTGGAC
GATCTTCTCCAAAGATTGCTGTATCTGCACATGGTCCACCCACACGTAGA
TAATGAGAGCTAGCTGACTAACCAGCAGCACCAGCATGACCACAGAGTAC
GAGGTCAGAGCACAGGAATTCTCGCGTATGGCGCCGCAGCATCCCATGAA
GGCTACCAGGAAGACTACGCAGCCAAGGACCAGGATGATGATGGCCACGC
TGTTGGCCGTGAAGGTCTCGCCGACGCCCGAGAAGTCCTTTATGGTGGAC
ACCATGATAGAGCCGAAGGTGATAAGCAAAATGCCGCATATCACAAACAG
TATGTTGAATATGAACAGCACATATTTCACAAAAACGCCGCCGCAATCCA
TGTCGACTGATAACT

BS15337.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:18:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG12846-PA 684 Tsp42Ed-RA 1..680 701..22 3300 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:57:49
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Ed-RB 1248 CG12846-RB 89..768 701..22 3340 99.4 Minus
Tsp42Ed-RA 886 CG12846-RA 89..768 701..22 3340 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:57:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7010103..7010301 90..288 995 100 Plus
2R 25286936 2R 7010663..7010855 450..642 920 98.4 Plus
2R 25286936 2R 7010432..7010594 288..450 800 99.4 Plus
2R 25286936 2R 7009978..7010047 22..91 350 100 Plus
2R 25286936 2R 7011592..7011651 642..701 300 100 Plus
Blast to na_te.dros performed on 2015-02-12 05:57:46 has no hits.

BS15337.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:23:57 Download gff for BS15337.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12846-PA 1..684 17..701 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:59:47 Download gff for BS15337.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12846-PA 1..684 17..701 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 06:30:45 Download gff for BS15337.3prime
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ed-RA 83..773 16..710 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:56:39 Download gff for BS15337.3prime
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ed-RA 83..773 16..710 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:56:39 Download gff for BS15337.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7009971..7010045 14..89 96 <- Plus
2R 7010103..7010300 90..287 100 <- Plus
2R 7010432..7010593 288..449 99 <- Plus
2R 7010663..7010854 450..641 98 <- Plus
2R 7011592..7011657 642..710 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 06:30:45 Download gff for BS15337.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2897476..2897550 14..89 96 <- Plus
arm_2R 2897608..2897805 90..287 100 <- Plus
arm_2R 2897937..2898098 288..449 99 <- Plus
arm_2R 2898168..2898359 450..641 98 <- Plus
arm_2R 2899097..2899162 642..710 95   Plus

BS15337.5prime Sequence

714 bp (714 high quality bases) assembled on 2006-10-24

> BS15337.5prime
GAAGTTATCCTTCGAGATGGATTGCGGCGGCGTTTTTGTGAAATATGTGC
TGTTCATATTCAACATACTGTTTGTGATATGCCTCATTGTGCTTATCACC
TTCGGCTCTATCATGGTGTCCACCATAAAGGACTTCTCGGGCGTCGGCGA
GACCTTCACGGCCAACAGCGTGGCCATCATCATCCTGGTCCTTGGCTGCG
TAGTCTTCCTGGTAGCCTTCATGGGATGCTGCGGCGCCATACGCGAGAAT
TCCTGTGCTCTGACCTCGTACTCTGTGGTCATGCTGGTGCTGCTGGTTAG
TCAGCTAGCTCTCATTATCTACGTGTGGGTGGACCATGTGCAGATACAGC
AATCTTTGGAGAAGATCGTCCAGACCATATGGGATCAACGCAAGACCGAT
GCCCTCCTCATGGACACACTGCAGCGATCGTTCAAGTGCTGCGGCTTGAA
CGGCTTCGCTGATTACGGCATTACGTATCCCGCCTCCTGCTGCGACTCGC
CCTCCAATGGAACCTGCGCACTAACCCAAGTCATGACGCGATCCAGTTGC
CTGAAGGCCGTTGATTCCTTCTGGGACACCAACGTGAGCATCATCAAGTA
CGCTGGCCTGGGTGTGACTGCTGTTGAGCTTGTGGCCTTCATTTTCGCCT
GCTGCCTGGCCAATCAGACCCGCAACTCGCAGAGACGCCAGAACTACTAA
AAGCTTTCTAGACC

BS15337.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:18:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG12846-PA 684 Tsp42Ed-RA 1..684 17..700 3245 98.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:32:10
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Ed-RB 1248 CG12846-RB 89..773 17..701 3320 99 Plus
Tsp42Ed-RA 886 CG12846-RA 89..773 17..701 3320 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:32:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7010103..7010301 628..430 995 100 Minus
2R 25286936 2R 7010663..7010855 268..76 875 96.9 Minus
2R 25286936 2R 7010432..7010594 430..268 800 99.4 Minus
2R 25286936 2R 7009973..7010047 701..627 375 100 Minus
2R 25286936 2R 7011592..7011651 76..17 300 100 Minus
Blast to na_te.dros performed on 2015-02-11 03:32:08 has no hits.

BS15337.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:23:58 Download gff for BS15337.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12846-PA 1..684 17..700 98   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:59:48 Download gff for BS15337.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12846-PA 1..684 17..700 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:06:00 Download gff for BS15337.5prime
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ed-RA 89..773 17..701 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:32:16 Download gff for BS15337.5prime
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ed-RA 89..773 17..701 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:32:16 Download gff for BS15337.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7010103..7010300 431..628 100 <- Minus
2R 7010432..7010593 269..430 99 <- Minus
2R 7010663..7010854 77..268 96 <- Minus
2R 7011592..7011651 17..76 100   Minus
2R 7009973..7010045 629..701 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:06:00 Download gff for BS15337.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2897478..2897550 629..701 100 <- Minus
arm_2R 2897608..2897805 431..628 100 <- Minus
arm_2R 2897937..2898098 269..430 99 <- Minus
arm_2R 2898168..2898359 77..268 96 <- Minus
arm_2R 2899097..2899156 17..76 100   Minus

BS15337.complete Sequence

716 bp assembled on 2006-11-01

GenBank Submission: FJ637920

> BS15337.complete
GAAGTTATCAGTCGACATGGATTGCGGCGGCGTTTTTGTGAAATATGTGC
TGTTCATATTCAACATACTGTTTGTGATATGCGGCATTTTGCTTATCACC
TTCGGCTCTATCATGGTGTCCACCATAAAGGACTTCTCGGGCGTCGGCGA
GACCTTCACGGCCAACAGCGTGGCCATCATCATCCTGGTCCTTGGCTGCG
TAGTCTTCCTGGTAGCCTTCATGGGATGCTGCGGCGCCATACGCGAGAAT
TCCTGTGCTCTGACCTCGTACTCTGTGGTCATGCTGGTGCTGCTGGTTAG
TCAGCTAGCTCTCATTATCTACGTGTGGGTGGACCATGTGCAGATACAGC
AATCTTTGGAGAAGATCGTCCAGACCATATGGGATCAACGCAAGACCGAT
GCCCTCCTCATGGACACACTGCAGCGATCGTTCAAGTGCTGCGGCTTGAA
CGGCTTCGCTGATTACGGCATTACGTATCCCGCCTCCTGCTGCGACTCGC
CCTCCAATGGAACCTGCGCACTAACCCAAGTCATGACGCGATCCAGTTGC
CTGAAGGCCGTTGATTCCTTCTGGGACACCAACGTGAGCATCATCAAGTA
CGCTGGCCTGGGTGTGACTGCTGTTGAGCTTGTGGCCTTCATTTTCGCCT
GCTGCCTGGCCAATCAGACCCGCAACTCGCAGAGACGCCAGAACTACTAA
AAGCTTTCTAGACCAT

BS15337.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:46:27
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Ed-RB 684 CG12846-PB 1..684 17..700 3360 99.4 Plus
Tsp42Ed-RA 684 CG12846-PA 1..684 17..700 3360 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:46:28
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Ed-RB 1248 CG12846-RB 89..773 17..701 3365 99.4 Plus
Tsp42Ed-RA 886 CG12846-RA 89..773 17..701 3365 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:46:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7010103..7010301 628..430 995 100 Minus
2R 25286936 2R 7010663..7010855 268..76 920 98.4 Minus
2R 25286936 2R 7010432..7010594 430..268 800 99.4 Minus
2R 25286936 2R 7009973..7010047 701..627 375 100 Minus
2R 25286936 2R 7011592..7011651 76..17 300 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:46:26 has no hits.

BS15337.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:32:46 Download gff for BS15337.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ed-RA 1..684 17..700 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:05:17 Download gff for BS15337.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ed-RA 198..888 8..701 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:21:08 Download gff for BS15337.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ed-RA 89..770 17..698 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:32:47 Download gff for BS15337.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ed-RA 198..888 8..701 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:30:29 Download gff for BS15337.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ed-RA 89..770 17..698 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:30:29 Download gff for BS15337.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7010432..7010593 269..430 99 <- Minus
2R 7009976..7010045 629..698 100 <- Minus
2R 7010103..7010300 431..628 100 <- Minus
2R 7010663..7010854 77..268 98 <- Minus
2R 7011592..7011651 17..76 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:21:08 Download gff for BS15337.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2897481..2897550 629..698 100 <- Minus
arm_2R 2897608..2897805 431..628 100 <- Minus
arm_2R 2897937..2898098 269..430 99 <- Minus
arm_2R 2898168..2898359 77..268 98 <- Minus
arm_2R 2899097..2899156 17..76 100   Minus

BS15337.pep Sequence

Translation from 16 to 699

> BS15337.pep
MDCGGVFVKYVLFIFNILFVICGILLITFGSIMVSTIKDFSGVGETFTAN
SVAIIILVLGCVVFLVAFMGCCGAIRENSCALTSYSVVMLVLLVSQLALI
IYVWVDHVQIQQSLEKIVQTIWDQRKTDALLMDTLQRSFKCCGLNGFADY
GITYPASCCDSPSNGTCALTQVMTRSSCLKAVDSFWDTNVSIIKYAGLGV
TAVELVAFIFACCLANQTRNSQRRQNY*

BS15337.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:30:57
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Ed-PB 227 CG12846-PB 1..227 1..227 1176 100 Plus
Tsp42Ed-PA 227 CG12846-PA 1..227 1..227 1176 100 Plus
Tsp42Ea-PC 226 CG18817-PC 1..226 1..227 530 41.9 Plus
Tsp42Ea-PB 226 CG18817-PB 1..226 1..227 530 41.9 Plus
Tsp42Ea-PA 226 CG18817-PA 1..226 1..227 530 41.9 Plus