Clone Sequence Records
BS15337.3prime Sequence
715 bp (609 high quality bases) assembled on 2006-10-24
> BS15337.3prime
ATGGTCTAGAAAGCTTTTACCTAGTTCTGGCGTCTCTGCGAGTTGCGGGT
CTGATTGGCCAGGCAGCAGGCGAAAATGAAGGCCACAAGCTCAACAGCAG
TCACACCCAGGCCAGCGTACTTGATGATGCTCACGTTGGTGTCCCAGAAG
GAATCAACGGCCTTCAGGCAACTGGATCGCGTCATGACTTGGGTTAGTGC
GCAGGTTCCATTGGAGGGCGAGTCGCAGCAGGAGGCGGGATACGTAATGC
CGTAATCAGCGAAGCCGTTCAAGCCGCAGCACTTGAACGATCGCTGCAGT
GTGTCCATGAGGAGGGCATCGGTCTTGCGTTGATCCCATATGGTCTGGAC
GATCTTCTCCAAAGATTGCTGTATCTGCACATGGTCCACCCACACGTAGA
TAATGAGAGCTAGCTGACTAACCAGCAGCACCAGCATGACCACAGAGTAC
GAGGTCAGAGCACAGGAATTCTCGCGTATGGCGCCGCAGCATCCCATGAA
GGCTACCAGGAAGACTACGCAGCCAAGGACCAGGATGATGATGGCCACGC
TGTTGGCCGTGAAGGTCTCGCCGACGCCCGAGAAGTCCTTTATGGTGGAC
ACCATGATAGAGCCGAAGGTGATAAGCAAAATGCCGCATATCACAAACAG
TATGTTGAATATGAACAGCACATATTTCACAAAAACGCCGCCGCAATCCA
TGTCGACTGATAACT
BS15337.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:18:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12846-PA | 684 | Tsp42Ed-RA | 1..680 | 701..22 | 3300 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:57:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42Ed-RB | 1248 | CG12846-RB | 89..768 | 701..22 | 3340 | 99.4 | Minus |
Tsp42Ed-RA | 886 | CG12846-RA | 89..768 | 701..22 | 3340 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:57:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7010103..7010301 | 90..288 | 995 | 100 | Plus |
2R | 25286936 | 2R | 7010663..7010855 | 450..642 | 920 | 98.4 | Plus |
2R | 25286936 | 2R | 7010432..7010594 | 288..450 | 800 | 99.4 | Plus |
2R | 25286936 | 2R | 7009978..7010047 | 22..91 | 350 | 100 | Plus |
2R | 25286936 | 2R | 7011592..7011651 | 642..701 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:57:46 has no hits.
BS15337.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:23:57 Download gff for
BS15337.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12846-PA | 1..684 | 17..701 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:59:47 Download gff for
BS15337.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12846-PA | 1..684 | 17..701 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 06:30:45 Download gff for
BS15337.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ed-RA | 83..773 | 16..710 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:56:39 Download gff for
BS15337.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ed-RA | 83..773 | 16..710 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:56:39 Download gff for
BS15337.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7009971..7010045 | 14..89 | 96 | <- | Plus |
2R | 7010103..7010300 | 90..287 | 100 | <- | Plus |
2R | 7010432..7010593 | 288..449 | 99 | <- | Plus |
2R | 7010663..7010854 | 450..641 | 98 | <- | Plus |
2R | 7011592..7011657 | 642..710 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 06:30:45 Download gff for
BS15337.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2897476..2897550 | 14..89 | 96 | <- | Plus |
arm_2R | 2897608..2897805 | 90..287 | 100 | <- | Plus |
arm_2R | 2897937..2898098 | 288..449 | 99 | <- | Plus |
arm_2R | 2898168..2898359 | 450..641 | 98 | <- | Plus |
arm_2R | 2899097..2899162 | 642..710 | 95 | | Plus |
BS15337.5prime Sequence
714 bp (714 high quality bases) assembled on 2006-10-24
> BS15337.5prime
GAAGTTATCCTTCGAGATGGATTGCGGCGGCGTTTTTGTGAAATATGTGC
TGTTCATATTCAACATACTGTTTGTGATATGCCTCATTGTGCTTATCACC
TTCGGCTCTATCATGGTGTCCACCATAAAGGACTTCTCGGGCGTCGGCGA
GACCTTCACGGCCAACAGCGTGGCCATCATCATCCTGGTCCTTGGCTGCG
TAGTCTTCCTGGTAGCCTTCATGGGATGCTGCGGCGCCATACGCGAGAAT
TCCTGTGCTCTGACCTCGTACTCTGTGGTCATGCTGGTGCTGCTGGTTAG
TCAGCTAGCTCTCATTATCTACGTGTGGGTGGACCATGTGCAGATACAGC
AATCTTTGGAGAAGATCGTCCAGACCATATGGGATCAACGCAAGACCGAT
GCCCTCCTCATGGACACACTGCAGCGATCGTTCAAGTGCTGCGGCTTGAA
CGGCTTCGCTGATTACGGCATTACGTATCCCGCCTCCTGCTGCGACTCGC
CCTCCAATGGAACCTGCGCACTAACCCAAGTCATGACGCGATCCAGTTGC
CTGAAGGCCGTTGATTCCTTCTGGGACACCAACGTGAGCATCATCAAGTA
CGCTGGCCTGGGTGTGACTGCTGTTGAGCTTGTGGCCTTCATTTTCGCCT
GCTGCCTGGCCAATCAGACCCGCAACTCGCAGAGACGCCAGAACTACTAA
AAGCTTTCTAGACC
BS15337.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:18:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12846-PA | 684 | Tsp42Ed-RA | 1..684 | 17..700 | 3245 | 98.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:32:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42Ed-RB | 1248 | CG12846-RB | 89..773 | 17..701 | 3320 | 99 | Plus |
Tsp42Ed-RA | 886 | CG12846-RA | 89..773 | 17..701 | 3320 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:32:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7010103..7010301 | 628..430 | 995 | 100 | Minus |
2R | 25286936 | 2R | 7010663..7010855 | 268..76 | 875 | 96.9 | Minus |
2R | 25286936 | 2R | 7010432..7010594 | 430..268 | 800 | 99.4 | Minus |
2R | 25286936 | 2R | 7009973..7010047 | 701..627 | 375 | 100 | Minus |
2R | 25286936 | 2R | 7011592..7011651 | 76..17 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 03:32:08 has no hits.
BS15337.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:23:58 Download gff for
BS15337.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12846-PA | 1..684 | 17..700 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:59:48 Download gff for
BS15337.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12846-PA | 1..684 | 17..700 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:06:00 Download gff for
BS15337.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ed-RA | 89..773 | 17..701 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:32:16 Download gff for
BS15337.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ed-RA | 89..773 | 17..701 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:32:16 Download gff for
BS15337.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7010103..7010300 | 431..628 | 100 | <- | Minus |
2R | 7010432..7010593 | 269..430 | 99 | <- | Minus |
2R | 7010663..7010854 | 77..268 | 96 | <- | Minus |
2R | 7011592..7011651 | 17..76 | 100 | | Minus |
2R | 7009973..7010045 | 629..701 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:06:00 Download gff for
BS15337.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2897478..2897550 | 629..701 | 100 | <- | Minus |
arm_2R | 2897608..2897805 | 431..628 | 100 | <- | Minus |
arm_2R | 2897937..2898098 | 269..430 | 99 | <- | Minus |
arm_2R | 2898168..2898359 | 77..268 | 96 | <- | Minus |
arm_2R | 2899097..2899156 | 17..76 | 100 | | Minus |
BS15337.complete Sequence
716 bp assembled on 2006-11-01
GenBank Submission: FJ637920
> BS15337.complete
GAAGTTATCAGTCGACATGGATTGCGGCGGCGTTTTTGTGAAATATGTGC
TGTTCATATTCAACATACTGTTTGTGATATGCGGCATTTTGCTTATCACC
TTCGGCTCTATCATGGTGTCCACCATAAAGGACTTCTCGGGCGTCGGCGA
GACCTTCACGGCCAACAGCGTGGCCATCATCATCCTGGTCCTTGGCTGCG
TAGTCTTCCTGGTAGCCTTCATGGGATGCTGCGGCGCCATACGCGAGAAT
TCCTGTGCTCTGACCTCGTACTCTGTGGTCATGCTGGTGCTGCTGGTTAG
TCAGCTAGCTCTCATTATCTACGTGTGGGTGGACCATGTGCAGATACAGC
AATCTTTGGAGAAGATCGTCCAGACCATATGGGATCAACGCAAGACCGAT
GCCCTCCTCATGGACACACTGCAGCGATCGTTCAAGTGCTGCGGCTTGAA
CGGCTTCGCTGATTACGGCATTACGTATCCCGCCTCCTGCTGCGACTCGC
CCTCCAATGGAACCTGCGCACTAACCCAAGTCATGACGCGATCCAGTTGC
CTGAAGGCCGTTGATTCCTTCTGGGACACCAACGTGAGCATCATCAAGTA
CGCTGGCCTGGGTGTGACTGCTGTTGAGCTTGTGGCCTTCATTTTCGCCT
GCTGCCTGGCCAATCAGACCCGCAACTCGCAGAGACGCCAGAACTACTAA
AAGCTTTCTAGACCAT
BS15337.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:46:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42Ed-RB | 684 | CG12846-PB | 1..684 | 17..700 | 3360 | 99.4 | Plus |
Tsp42Ed-RA | 684 | CG12846-PA | 1..684 | 17..700 | 3360 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:46:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42Ed-RB | 1248 | CG12846-RB | 89..773 | 17..701 | 3365 | 99.4 | Plus |
Tsp42Ed-RA | 886 | CG12846-RA | 89..773 | 17..701 | 3365 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:46:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7010103..7010301 | 628..430 | 995 | 100 | Minus |
2R | 25286936 | 2R | 7010663..7010855 | 268..76 | 920 | 98.4 | Minus |
2R | 25286936 | 2R | 7010432..7010594 | 430..268 | 800 | 99.4 | Minus |
2R | 25286936 | 2R | 7009973..7010047 | 701..627 | 375 | 100 | Minus |
2R | 25286936 | 2R | 7011592..7011651 | 76..17 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:46:26 has no hits.
BS15337.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:32:46 Download gff for
BS15337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ed-RA | 1..684 | 17..700 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:05:17 Download gff for
BS15337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ed-RA | 198..888 | 8..701 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:21:08 Download gff for
BS15337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ed-RA | 89..770 | 17..698 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:32:47 Download gff for
BS15337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ed-RA | 198..888 | 8..701 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:30:29 Download gff for
BS15337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ed-RA | 89..770 | 17..698 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:30:29 Download gff for
BS15337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7010432..7010593 | 269..430 | 99 | <- | Minus |
2R | 7009976..7010045 | 629..698 | 100 | <- | Minus |
2R | 7010103..7010300 | 431..628 | 100 | <- | Minus |
2R | 7010663..7010854 | 77..268 | 98 | <- | Minus |
2R | 7011592..7011651 | 17..76 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:21:08 Download gff for
BS15337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2897481..2897550 | 629..698 | 100 | <- | Minus |
arm_2R | 2897608..2897805 | 431..628 | 100 | <- | Minus |
arm_2R | 2897937..2898098 | 269..430 | 99 | <- | Minus |
arm_2R | 2898168..2898359 | 77..268 | 98 | <- | Minus |
arm_2R | 2899097..2899156 | 17..76 | 100 | | Minus |
BS15337.pep Sequence
Translation from 16 to 699
> BS15337.pep
MDCGGVFVKYVLFIFNILFVICGILLITFGSIMVSTIKDFSGVGETFTAN
SVAIIILVLGCVVFLVAFMGCCGAIRENSCALTSYSVVMLVLLVSQLALI
IYVWVDHVQIQQSLEKIVQTIWDQRKTDALLMDTLQRSFKCCGLNGFADY
GITYPASCCDSPSNGTCALTQVMTRSSCLKAVDSFWDTNVSIIKYAGLGV
TAVELVAFIFACCLANQTRNSQRRQNY*
BS15337.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:30:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42Ed-PB | 227 | CG12846-PB | 1..227 | 1..227 | 1176 | 100 | Plus |
Tsp42Ed-PA | 227 | CG12846-PA | 1..227 | 1..227 | 1176 | 100 | Plus |
Tsp42Ea-PC | 226 | CG18817-PC | 1..226 | 1..227 | 530 | 41.9 | Plus |
Tsp42Ea-PB | 226 | CG18817-PB | 1..226 | 1..227 | 530 | 41.9 | Plus |
Tsp42Ea-PA | 226 | CG18817-PA | 1..226 | 1..227 | 530 | 41.9 | Plus |