Clone BS15343 Report

Search the DGRC for BS15343

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:153
Well:43
Vector:pDNR-Dual
Associated Gene/TranscriptCG4098-RA
Protein status:BS15343.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15343.3prime Sequence

832 bp (737 high quality bases) assembled on 2006-10-24

> BS15343.3prime
ATGGTCTAGAAAGCTTCTACCAGTGTGCATTTCGTCGGATGACAACCTCA
CGGACTATGTCGGCATGATTGGCGTGCAGCTTGAGATTCGAGTCGACGTC
CGTCCAGCGCACATTGGAGGCATCGTCACCGGCCATTAGCTCCAATTGTC
CCACCTGGCTCCCGTCTTCATCGTGGAAGTTCAGCGCAGTGGTTTCCATC
CAAGCGTTGTCCGTGTTTCGAAAATCGTCTACGTAGCCTTGGTATACCTG
AACGCCTCCCGCTTGAAAAAATCGCTCAACCATGTTGGCTTTGTCCGTGA
AATTCAATGCCTCCTCGGTGAACTCCCGCTTAAGGGTGACACTGACATTC
TCGCCGGGATCGACCATTCCACCGGGAATGGCCCACAACTTGTTGTCGGA
CCGCTGTATGGCAACCATCTGTATGATATTCTTGCCGGTTGTCGGGTTGG
CCACAATTGCTCCTTGGTCGTCACGCTTCCAGCGCGTGACGATTGGATCT
GCGGCATGATTTGGACCCCATCTGCCTAGCGAACCACGTCCGGTTAGTCC
GGTACGCCCGATCGGATTTAGGGGCAGTCCATTCTGCACGTTGTAGGCAC
CGTGAAAGGATTCGCGGTTTACCTGTCCATCCAGCTGATTCCACTGTGGC
CAGAATGTGTCGCTGGGCAACGGCGGATCAGCCCACACCTGCCCGCCAAT
ATGTGGCGCCGTGTACGCAGGCGGGCAGTAGTCCGGGAACGGCTCCGACC
AGAAGACCTGTTCGTCGGAAACTGGGTACCGGAGGACTGAGCTGCGCGGA
TACATGTTGTTGCGGCACATTAGGTGCCGGAA

BS15343.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:19:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG4098-PA 924 CG4098-RA 109..924 832..17 4080 100 Minus
CG18217-PA 1797 CG18217-RA 1298..1797 516..17 2450 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:57:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG4098-RA 1154 CG4098-RA 249..1066 832..15 4090 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:57:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16600539..16600959 15..435 2090 99.8 Plus
3L 28110227 3L 16608226..16608646 15..435 2090 99.8 Plus
3L 28110227 3L 16608698..16609099 431..832 2010 100 Plus
3L 28110227 3L 16601007..16601092 431..516 400 97.7 Plus
Blast to na_te.dros performed on 2015-02-12 05:57:56 has no hits.

BS15343.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:24:10 Download gff for BS15343.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4098-PA 111..924 17..830 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:00:04 Download gff for BS15343.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4098-PA 111..924 17..830 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 06:30:47 Download gff for BS15343.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4098-RA 249..1069 12..832 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:57:12 Download gff for BS15343.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4098-RA 249..1069 12..832 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:57:12 Download gff for BS15343.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16608223..16608642 12..431 99 <- Plus
3L 16608699..16609099 432..832 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 06:30:47 Download gff for BS15343.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16601323..16601742 12..431 99 <- Plus
arm_3L 16601799..16602199 432..832 100   Plus

BS15343.5prime Sequence

784 bp (751 high quality bases) assembled on 2006-10-24

> BS15343.5prime
GAAGTTATCAGTCGACATGACGAGTTTCGAGTTTGCACTGCTGCCGCTTC
TGTTTTTGCCACTGATCCTGGAAAACCCGCTAACCTCCGCCCAAATGATG
TCATCGCTGGTGAAGCCGGGCATTTTCCGGCACCTAATGTGCCGCAACAA
CATGTATCCGCGCAGCTCAGTCCTCCGGTACCCAGTTTCCGACGAACAGG
TCTTCTGGTCGGAGCCGTTCCCGGACTACTGCCCGCCTGCGTACACGGCG
CCACATATTGGCGGGCAGGTGTGGGCTGATCCGCCGTTGCCCAGCGACAC
ATTCTGGCCACAGTGGAATCAGCTGGATGGACAGGTAAACCGCGAATCCT
TTCACGGTGCCTACAACGTGCAGAATGGACTGCCCCTAAATCCGATCGGG
CGTACCGGACTAACCGGACGTGGTTCGCTAGGCAGATGGGGTCCAAATCA
TGCCGCAGATCCAATCGTCACGCGCTGGAAGCGTGACGACCAAGGAGCAA
TTGTGGCCAACCCGACAACCGGCAAGAATATCATACAGATGGTTGCCATA
CAGCGGTCCGACAACAAGTTGTGGGCCATTCCCGGTGGAATGGTCGATCC
CGGCGAGAATGTCAGTGTCACCCTTAAGCGGGAGTTCACCGAGGAGGCAT
TGAATTTCACGGACAAAGCCAACATGGTTGAGCGATTTTTTCAAGCGGGA
GGCGTTCAGGTATACCAAGGCTACGTAGACGATTTTCGAAACACGGACAA
CGCTTGGATGGAAACCACTGCGCTGAACTTCCAC

BS15343.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:19:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG4098-PA 924 CG4098-RA 1..768 17..784 3840 100 Plus
CG18217-PA 1797 CG18217-RA 1298..1641 441..784 1670 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:25:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG4098-RA 1154 CG4098-RA 133..908 8..784 3845 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:25:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16608698..16609207 526..17 2550 100 Minus
3L 28110227 3L 16600697..16600959 784..522 1300 99.6 Minus
3L 28110227 3L 16608384..16608646 784..522 1300 99.6 Minus
3L 28110227 3L 16601007..16601092 526..441 400 97.7 Minus
Blast to na_te.dros performed on 2015-02-12 10:25:41 has no hits.

BS15343.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:24:12 Download gff for BS15343.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4098-PA 1..768 17..784 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:00:06 Download gff for BS15343.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4098-PA 1..768 17..784 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:57:15 Download gff for BS15343.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4098-RA 129..908 1..784 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:02:58 Download gff for BS15343.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4098-RA 129..908 1..784 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:02:58 Download gff for BS15343.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16608384..16608642 526..784 100 <- Minus
3L 16608699..16609219 1..525 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:57:15 Download gff for BS15343.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16601484..16601742 526..784 100 <- Minus
arm_3L 16601799..16602319 1..525 99   Minus

BS15343.complete Sequence

956 bp assembled on 2006-11-01

GenBank Submission: FJ637921

> BS15343.complete
GAAGTTATCAGTCGACATGACGAGTTTCGAGTTTGCACTGCTGCCGCTTC
TGTTTTTGCCACTGATCCTGGAAAACCCGCTAACCTCCGCCCAAATGATG
TCATCGCTGGTGAAGCCGGGCATTTTCCGGCACCTAATGTGCCGCAACAA
CATGTATCCGCGCAGCTCAGTCCTCCGGTACCCAGTTTCCGACGAACAGG
TCTTCTGGTCGGAGCCGTTCCCGGACTACTGCCCGCCTGCGTACACGGCG
CCACATATTGGCGGGCAGGTGTGGGCTGATCCGCCGTTGCCCAGCGACAC
ATTCTGGCCACAGTGGAATCAGCTGGATGGACAGGTAAACCGCGAATCCT
TTCACGGTGCCTACAACGTGCAGAATGGACTGCCCCTAAATCCGATCGGG
CGTACCGGACTAACCGGACGTGGTTCGCTAGGCAGATGGGGTCCAAATCA
TGCCGCAGATCCAATCGTCACGCGCTGGAAGCGTGACGACCAAGGAGCAA
TTGTGGCCAACCCGACAACCGGCAAGAATATCATACAGATGGTTGCCATA
CAGCGGTCCGACAACAAGTTGTGGGCCATTCCCGGTGGAATGGTCGATCC
CGGCGAGAATGTCAGTGTCACCCTTAAGCGGGAGTTCACCGAGGAGGCAT
TGAATTTCACGGACAAAGCCAACATGGTTGAGCGATTTTTTCAAGCGGGA
GGCGTTCAGGTATACCAAGGCTACGTAGACGATTTTCGAAACACGGACAA
CGCTTGGATGGAAACCACTGCGCTGAACTTCCACGATGAAGACGGGAGCC
AGGTGGGACAATTGGAGCTAATGGCCGGTGACGATGCCTCCAATGTGCGC
TGGACGGACGTCGACTCGAATCTCAAGCTGCACGCCAATCATGCCGACAT
AGTCCGTGAGGTTGTCATCCGACGAAATGCACACTGGTAGAAGCTTTCTA
GACCAT

BS15343.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:05:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG4098-RA 924 CG4098-PA 1..924 17..940 4620 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:05:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG4098-RA 1154 CG4098-RA 141..1066 17..942 4630 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:04:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16608698..16609207 526..17 2550 100 Minus
3L 28110227 3L 16600539..16600959 942..522 2090 99.8 Minus
3L 28110227 3L 16608226..16608646 942..522 2090 99.8 Minus
3L 28110227 3L 16601007..16601092 526..441 400 97.7 Minus
Blast to na_te.dros performed on 2014-11-27 07:04:59 has no hits.

BS15343.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:32:48 Download gff for BS15343.complete
Subject Subject Range Query Range Percent Splice Strand
CG4098-RA 1..924 17..940 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:05:18 Download gff for BS15343.complete
Subject Subject Range Query Range Percent Splice Strand
CG4098-RA 1..942 3..945 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:04:33 Download gff for BS15343.complete
Subject Subject Range Query Range Percent Splice Strand
CG4098-RA 141..1064 17..940 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:32:48 Download gff for BS15343.complete
Subject Subject Range Query Range Percent Splice Strand
CG4098-RA 1..942 3..945 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:02:31 Download gff for BS15343.complete
Subject Subject Range Query Range Percent Splice Strand
CG4098-RA 141..1064 17..940 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:02:31 Download gff for BS15343.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16608228..16608642 526..940 100 <- Minus
3L 16608699..16609207 17..525 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:04:33 Download gff for BS15343.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16601328..16601742 526..940 100 <- Minus
arm_3L 16601799..16602307 17..525 100   Minus

BS15343.pep Sequence

Translation from 16 to 939

> BS15343.pep
MTSFEFALLPLLFLPLILENPLTSAQMMSSLVKPGIFRHLMCRNNMYPRS
SVLRYPVSDEQVFWSEPFPDYCPPAYTAPHIGGQVWADPPLPSDTFWPQW
NQLDGQVNRESFHGAYNVQNGLPLNPIGRTGLTGRGSLGRWGPNHAADPI
VTRWKRDDQGAIVANPTTGKNIIQMVAIQRSDNKLWAIPGGMVDPGENVS
VTLKREFTEEALNFTDKANMVERFFQAGGVQVYQGYVDDFRNTDNAWMET
TALNFHDEDGSQVGQLELMAGDDASNVRWTDVDSNLKLHANHADIVREVV
IRRNAHW*

BS15343.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:30:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG4098-PA 307 CG4098-PA 1..307 1..307 1667 100 Plus