Clone Sequence Records
BS15343.3prime Sequence
832 bp (737 high quality bases) assembled on 2006-10-24
> BS15343.3prime
ATGGTCTAGAAAGCTTCTACCAGTGTGCATTTCGTCGGATGACAACCTCA
CGGACTATGTCGGCATGATTGGCGTGCAGCTTGAGATTCGAGTCGACGTC
CGTCCAGCGCACATTGGAGGCATCGTCACCGGCCATTAGCTCCAATTGTC
CCACCTGGCTCCCGTCTTCATCGTGGAAGTTCAGCGCAGTGGTTTCCATC
CAAGCGTTGTCCGTGTTTCGAAAATCGTCTACGTAGCCTTGGTATACCTG
AACGCCTCCCGCTTGAAAAAATCGCTCAACCATGTTGGCTTTGTCCGTGA
AATTCAATGCCTCCTCGGTGAACTCCCGCTTAAGGGTGACACTGACATTC
TCGCCGGGATCGACCATTCCACCGGGAATGGCCCACAACTTGTTGTCGGA
CCGCTGTATGGCAACCATCTGTATGATATTCTTGCCGGTTGTCGGGTTGG
CCACAATTGCTCCTTGGTCGTCACGCTTCCAGCGCGTGACGATTGGATCT
GCGGCATGATTTGGACCCCATCTGCCTAGCGAACCACGTCCGGTTAGTCC
GGTACGCCCGATCGGATTTAGGGGCAGTCCATTCTGCACGTTGTAGGCAC
CGTGAAAGGATTCGCGGTTTACCTGTCCATCCAGCTGATTCCACTGTGGC
CAGAATGTGTCGCTGGGCAACGGCGGATCAGCCCACACCTGCCCGCCAAT
ATGTGGCGCCGTGTACGCAGGCGGGCAGTAGTCCGGGAACGGCTCCGACC
AGAAGACCTGTTCGTCGGAAACTGGGTACCGGAGGACTGAGCTGCGCGGA
TACATGTTGTTGCGGCACATTAGGTGCCGGAA
BS15343.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:19:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4098-PA | 924 | CG4098-RA | 109..924 | 832..17 | 4080 | 100 | Minus |
CG18217-PA | 1797 | CG18217-RA | 1298..1797 | 516..17 | 2450 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:57:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4098-RA | 1154 | CG4098-RA | 249..1066 | 832..15 | 4090 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:57:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16600539..16600959 | 15..435 | 2090 | 99.8 | Plus |
3L | 28110227 | 3L | 16608226..16608646 | 15..435 | 2090 | 99.8 | Plus |
3L | 28110227 | 3L | 16608698..16609099 | 431..832 | 2010 | 100 | Plus |
3L | 28110227 | 3L | 16601007..16601092 | 431..516 | 400 | 97.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:57:56 has no hits.
BS15343.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:24:10 Download gff for
BS15343.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4098-PA | 111..924 | 17..830 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:00:04 Download gff for
BS15343.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4098-PA | 111..924 | 17..830 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 06:30:47 Download gff for
BS15343.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4098-RA | 249..1069 | 12..832 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:57:12 Download gff for
BS15343.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4098-RA | 249..1069 | 12..832 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:57:12 Download gff for
BS15343.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16608223..16608642 | 12..431 | 99 | <- | Plus |
3L | 16608699..16609099 | 432..832 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 06:30:47 Download gff for
BS15343.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16601323..16601742 | 12..431 | 99 | <- | Plus |
arm_3L | 16601799..16602199 | 432..832 | 100 | | Plus |
BS15343.5prime Sequence
784 bp (751 high quality bases) assembled on 2006-10-24
> BS15343.5prime
GAAGTTATCAGTCGACATGACGAGTTTCGAGTTTGCACTGCTGCCGCTTC
TGTTTTTGCCACTGATCCTGGAAAACCCGCTAACCTCCGCCCAAATGATG
TCATCGCTGGTGAAGCCGGGCATTTTCCGGCACCTAATGTGCCGCAACAA
CATGTATCCGCGCAGCTCAGTCCTCCGGTACCCAGTTTCCGACGAACAGG
TCTTCTGGTCGGAGCCGTTCCCGGACTACTGCCCGCCTGCGTACACGGCG
CCACATATTGGCGGGCAGGTGTGGGCTGATCCGCCGTTGCCCAGCGACAC
ATTCTGGCCACAGTGGAATCAGCTGGATGGACAGGTAAACCGCGAATCCT
TTCACGGTGCCTACAACGTGCAGAATGGACTGCCCCTAAATCCGATCGGG
CGTACCGGACTAACCGGACGTGGTTCGCTAGGCAGATGGGGTCCAAATCA
TGCCGCAGATCCAATCGTCACGCGCTGGAAGCGTGACGACCAAGGAGCAA
TTGTGGCCAACCCGACAACCGGCAAGAATATCATACAGATGGTTGCCATA
CAGCGGTCCGACAACAAGTTGTGGGCCATTCCCGGTGGAATGGTCGATCC
CGGCGAGAATGTCAGTGTCACCCTTAAGCGGGAGTTCACCGAGGAGGCAT
TGAATTTCACGGACAAAGCCAACATGGTTGAGCGATTTTTTCAAGCGGGA
GGCGTTCAGGTATACCAAGGCTACGTAGACGATTTTCGAAACACGGACAA
CGCTTGGATGGAAACCACTGCGCTGAACTTCCAC
BS15343.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:19:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4098-PA | 924 | CG4098-RA | 1..768 | 17..784 | 3840 | 100 | Plus |
CG18217-PA | 1797 | CG18217-RA | 1298..1641 | 441..784 | 1670 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:25:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4098-RA | 1154 | CG4098-RA | 133..908 | 8..784 | 3845 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:25:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16608698..16609207 | 526..17 | 2550 | 100 | Minus |
3L | 28110227 | 3L | 16600697..16600959 | 784..522 | 1300 | 99.6 | Minus |
3L | 28110227 | 3L | 16608384..16608646 | 784..522 | 1300 | 99.6 | Minus |
3L | 28110227 | 3L | 16601007..16601092 | 526..441 | 400 | 97.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:25:41 has no hits.
BS15343.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:24:12 Download gff for
BS15343.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4098-PA | 1..768 | 17..784 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:00:06 Download gff for
BS15343.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4098-PA | 1..768 | 17..784 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:57:15 Download gff for
BS15343.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4098-RA | 129..908 | 1..784 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:02:58 Download gff for
BS15343.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4098-RA | 129..908 | 1..784 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:02:58 Download gff for
BS15343.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16608384..16608642 | 526..784 | 100 | <- | Minus |
3L | 16608699..16609219 | 1..525 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:57:15 Download gff for
BS15343.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16601484..16601742 | 526..784 | 100 | <- | Minus |
arm_3L | 16601799..16602319 | 1..525 | 99 | | Minus |
BS15343.complete Sequence
956 bp assembled on 2006-11-01
GenBank Submission: FJ637921
> BS15343.complete
GAAGTTATCAGTCGACATGACGAGTTTCGAGTTTGCACTGCTGCCGCTTC
TGTTTTTGCCACTGATCCTGGAAAACCCGCTAACCTCCGCCCAAATGATG
TCATCGCTGGTGAAGCCGGGCATTTTCCGGCACCTAATGTGCCGCAACAA
CATGTATCCGCGCAGCTCAGTCCTCCGGTACCCAGTTTCCGACGAACAGG
TCTTCTGGTCGGAGCCGTTCCCGGACTACTGCCCGCCTGCGTACACGGCG
CCACATATTGGCGGGCAGGTGTGGGCTGATCCGCCGTTGCCCAGCGACAC
ATTCTGGCCACAGTGGAATCAGCTGGATGGACAGGTAAACCGCGAATCCT
TTCACGGTGCCTACAACGTGCAGAATGGACTGCCCCTAAATCCGATCGGG
CGTACCGGACTAACCGGACGTGGTTCGCTAGGCAGATGGGGTCCAAATCA
TGCCGCAGATCCAATCGTCACGCGCTGGAAGCGTGACGACCAAGGAGCAA
TTGTGGCCAACCCGACAACCGGCAAGAATATCATACAGATGGTTGCCATA
CAGCGGTCCGACAACAAGTTGTGGGCCATTCCCGGTGGAATGGTCGATCC
CGGCGAGAATGTCAGTGTCACCCTTAAGCGGGAGTTCACCGAGGAGGCAT
TGAATTTCACGGACAAAGCCAACATGGTTGAGCGATTTTTTCAAGCGGGA
GGCGTTCAGGTATACCAAGGCTACGTAGACGATTTTCGAAACACGGACAA
CGCTTGGATGGAAACCACTGCGCTGAACTTCCACGATGAAGACGGGAGCC
AGGTGGGACAATTGGAGCTAATGGCCGGTGACGATGCCTCCAATGTGCGC
TGGACGGACGTCGACTCGAATCTCAAGCTGCACGCCAATCATGCCGACAT
AGTCCGTGAGGTTGTCATCCGACGAAATGCACACTGGTAGAAGCTTTCTA
GACCAT
BS15343.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:05:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4098-RA | 924 | CG4098-PA | 1..924 | 17..940 | 4620 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:05:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4098-RA | 1154 | CG4098-RA | 141..1066 | 17..942 | 4630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:04:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16608698..16609207 | 526..17 | 2550 | 100 | Minus |
3L | 28110227 | 3L | 16600539..16600959 | 942..522 | 2090 | 99.8 | Minus |
3L | 28110227 | 3L | 16608226..16608646 | 942..522 | 2090 | 99.8 | Minus |
3L | 28110227 | 3L | 16601007..16601092 | 526..441 | 400 | 97.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:04:59 has no hits.
BS15343.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:32:48 Download gff for
BS15343.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4098-RA | 1..924 | 17..940 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:05:18 Download gff for
BS15343.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4098-RA | 1..942 | 3..945 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:04:33 Download gff for
BS15343.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4098-RA | 141..1064 | 17..940 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:32:48 Download gff for
BS15343.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4098-RA | 1..942 | 3..945 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:02:31 Download gff for
BS15343.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4098-RA | 141..1064 | 17..940 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:02:31 Download gff for
BS15343.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16608228..16608642 | 526..940 | 100 | <- | Minus |
3L | 16608699..16609207 | 17..525 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:04:33 Download gff for
BS15343.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16601328..16601742 | 526..940 | 100 | <- | Minus |
arm_3L | 16601799..16602307 | 17..525 | 100 | | Minus |
BS15343.pep Sequence
Translation from 16 to 939
> BS15343.pep
MTSFEFALLPLLFLPLILENPLTSAQMMSSLVKPGIFRHLMCRNNMYPRS
SVLRYPVSDEQVFWSEPFPDYCPPAYTAPHIGGQVWADPPLPSDTFWPQW
NQLDGQVNRESFHGAYNVQNGLPLNPIGRTGLTGRGSLGRWGPNHAADPI
VTRWKRDDQGAIVANPTTGKNIIQMVAIQRSDNKLWAIPGGMVDPGENVS
VTLKREFTEEALNFTDKANMVERFFQAGGVQVYQGYVDDFRNTDNAWMET
TALNFHDEDGSQVGQLELMAGDDASNVRWTDVDSNLKLHANHADIVREVV
IRRNAHW*
BS15343.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:30:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4098-PA | 307 | CG4098-PA | 1..307 | 1..307 | 1667 | 100 | Plus |