Clone Sequence Records
BS15344.3prime Sequence
384 bp (384 high quality bases) assembled on 2006-10-24
> BS15344.3prime
ATGGTCTAGAAAGCTTCTACCGCCGATCCCATGGCAGGCAATGCAGCAAC
TGCCCATGCAGCAGCAGCCTCCCCCACGTCAACACCCACATCCTCATCGG
GATCCGCATCACCAATATCCGCACCAGATGCCGATCTCGAGCCACGCATG
TACTGTACCGAAGAAAACGGCTTACGAAAGCGAACGTAAGCCCGGTGGAT
CCACGGCGCATCTTTAAGGCCCTACGATCTGGTCTGCCCGGCCTGTTAAT
TTTGCTGATGGAACACTTTCTCGCCGAGATGTTCGGCAAACAAAAAACGA
GGAGCAGTCCGCTCAGCTGGCGGAAGATGCTGATGGCGACATCATCAGAA
GTTACAACCGCAGCCGGCATGTCGACTGATAACT
BS15344.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:19:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32021-PA | 354 | CG32021-RA | 1..354 | 370..17 | 1745 | 99.7 | Minus |
CG7467-PC | 7671 | osa-RC | 5120..5156 | 294..330 | 160 | 97.2 | Plus |
CG7467-PA | 8112 | osa-RA | 5561..5597 | 294..330 | 160 | 97.2 | Plus |
CG7467-PB | 8151 | osa-RB | 5600..5636 | 294..330 | 160 | 97.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:37:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
unc-13-RG | 12914 | CG2999-RG | 420..773 | 370..17 | 1755 | 99.7 | Minus |
osa-RF | 10243 | CG7467-RF | 5222..5336 | 19..133 | 290 | 83.5 | Plus |
osa-RE | 9940 | CG7467-RE | 4919..5033 | 19..133 | 290 | 83.5 | Plus |
osa-RF | 10243 | CG7467-RF | 5443..5538 | 142..237 | 255 | 84.4 | Plus |
osa-RF | 10243 | CG7467-RF | 5666..5738 | 269..340 | 220 | 87.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:37:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 907334..907554 | 17..237 | 1105 | 100 | Plus |
4 | 1348131 | 4 | 907620..907756 | 234..370 | 670 | 99.3 | Plus |
3R | 32079331 | 3R | 2925169..2925306 | 370..234 | 340 | 84.8 | Minus |
3R | 32079331 | 3R | 2996823..2996960 | 234..370 | 340 | 84.8 | Plus |
3R | 32079331 | 3R | 17692725..17692839 | 133..19 | 290 | 83.5 | Minus |
2R | 25286936 | 2R | 1247305..1247434 | 242..371 | 270 | 84 | Plus |
3R | 32079331 | 3R | 17692523..17692618 | 237..142 | 255 | 84.4 | Minus |
3R | 32079331 | 3R | 3344376..3344501 | 363..239 | 250 | 81.7 | Minus |
3R | 32079331 | 3R | 3467361..3467455 | 144..238 | 250 | 84.2 | Plus |
3R | 32079331 | 3R | 3519179..3519265 | 106..20 | 225 | 83.9 | Minus |
3R | 32079331 | 3R | 3467179..3467251 | 20..92 | 200 | 84.9 | Plus |
3R | 32079331 | 3R | 17692323..17692395 | 340..269 | 195 | 87.7 | Minus |
3R | 32079331 | 3R | 3344679..3344794 | 133..17 | 190 | 79.5 | Minus |
Blast to na_te.dros performed 2015-02-10 16:37:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6801..6962 | 12..176 | 133 | 55.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2417 | 44..127 | 132 | 61.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2327..2419 | 34..126 | 123 | 59.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2441..2524 | 43..126 | 123 | 60.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2340..2422 | 44..126 | 118 | 60.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2828..2874 | 43..89 | 109 | 70.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2618..2665 | 43..90 | 105 | 68.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2485..2539 | 42..96 | 104 | 65.5 | Plus |
BS15344.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:24:13 Download gff for
BS15344.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32021-PA | 1..354 | 17..370 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:00:08 Download gff for
BS15344.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32021-PA | 1..354 | 17..370 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed on 2013-08-15 06:30:47 has no hits.
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:25:16 Download gff for
BS15344.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
unc-13-RG | 415..783 | 4..379 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:25:16 Download gff for
BS15344.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 907324..907550 | 4..233 | 97 | <- | Plus |
4 | 907620..907761 | 234..379 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:30:47 Download gff for
BS15344.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 927950..928176 | 4..233 | 97 | <- | Plus |
arm_4 | 928246..928387 | 234..379 | 96 | | Plus |
BS15344.5prime Sequence
384 bp (384 high quality bases) assembled on 2006-10-24
> BS15344.5prime
GAAGTTATCAGTCGACATGCCGGCTGCGGTTGTAACTTCTGATGATGTCG
CCATCAGCATCTTCCGCCAGCTGAGCGGACTGCTCCTCGTTTTTTGTTTG
CCGAACATCTCGGCGAGAAAGTGTTCCATCAGCAAAATTAACAGGCCGGG
CAGACCAGATCGTAGGGCCTTAAAGATGCGCCGTGGATCCACCGGGCTTA
CGTTCGCTTTCGTAAGCCGTTTTCTTCGGTACAGTACATGCGTGGCTCGA
GATCGGCATCTGGTGCGGATATTGGTGATGCGGATCCCGATGAGGATGTG
GGTGTTGACGTGGGGGAGGCTGCTGCTGCATGGGCAGTTGCTGCATTGCC
TGCCATGGGATCGGCGGTAGAAGCTTTCTAGACC
BS15344.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:19:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32021-PA | 354 | CG32021-RA | 1..354 | 17..370 | 1745 | 99.7 | Plus |
CG7467-PC | 7671 | osa-RC | 5120..5156 | 93..57 | 160 | 97.2 | Minus |
CG7467-PA | 8112 | osa-RA | 5561..5597 | 93..57 | 160 | 97.2 | Minus |
CG7467-PB | 8151 | osa-RB | 5600..5636 | 93..57 | 160 | 97.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:32:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
unc-13-RG | 12914 | CG2999-RG | 420..773 | 17..370 | 1755 | 99.7 | Plus |
osa-RF | 10243 | CG7467-RF | 5222..5336 | 368..254 | 290 | 83.5 | Minus |
osa-RE | 9940 | CG7467-RE | 4919..5033 | 368..254 | 290 | 83.5 | Minus |
osa-RF | 10243 | CG7467-RF | 5443..5538 | 245..150 | 255 | 84.4 | Minus |
osa-RF | 10243 | CG7467-RF | 5666..5738 | 118..47 | 220 | 87.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:32:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 907334..907554 | 370..150 | 1105 | 100 | Minus |
4 | 1348131 | 4 | 907620..907756 | 153..17 | 670 | 99.3 | Minus |
3R | 32079331 | 3R | 2925169..2925306 | 17..153 | 340 | 84.8 | Plus |
3R | 32079331 | 3R | 2996823..2996960 | 153..17 | 340 | 84.8 | Minus |
3R | 32079331 | 3R | 17692725..17692839 | 254..368 | 290 | 83.5 | Plus |
2R | 25286936 | 2R | 1247305..1247434 | 145..16 | 270 | 84 | Minus |
3R | 32079331 | 3R | 17692523..17692618 | 150..245 | 255 | 84.4 | Plus |
3R | 32079331 | 3R | 3344376..3344501 | 24..148 | 250 | 81.7 | Plus |
3R | 32079331 | 3R | 3467361..3467455 | 243..149 | 250 | 84.2 | Minus |
3R | 32079331 | 3R | 3519179..3519265 | 281..367 | 225 | 83.9 | Plus |
3R | 32079331 | 3R | 3467179..3467251 | 367..295 | 200 | 84.9 | Minus |
3R | 32079331 | 3R | 17692323..17692395 | 47..118 | 195 | 87.7 | Plus |
3R | 32079331 | 3R | 3344679..3344794 | 254..370 | 190 | 79.5 | Plus |
Blast to na_te.dros performed 2015-02-11 03:32:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6801..6962 | 375..211 | 133 | 55.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2417 | 343..260 | 132 | 61.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2327..2419 | 353..261 | 123 | 59.1 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2441..2524 | 344..261 | 123 | 60.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2340..2422 | 343..261 | 118 | 60.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2828..2874 | 344..298 | 109 | 70.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2618..2665 | 344..297 | 105 | 68.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2485..2539 | 345..291 | 104 | 65.5 | Minus |
BS15344.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:24:14 Download gff for
BS15344.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32021-PA | 1..354 | 17..370 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:00:10 Download gff for
BS15344.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32021-PA | 1..354 | 17..370 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed on 2013-08-22 21:06:02 has no hits.
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:35:21 Download gff for
BS15344.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
unc-13-RG | 415..783 | 8..383 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:35:21 Download gff for
BS15344.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 907324..907550 | 154..383 | 97 | <- | Minus |
4 | 907620..907761 | 8..153 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:06:02 Download gff for
BS15344.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 927950..928176 | 154..383 | 97 | <- | Minus |
arm_4 | 928246..928387 | 8..153 | 96 | | Minus |
BS15344.complete Sequence
386 bp assembled on 2006-11-01
GenBank Submission: FJ637922
> BS15344.complete
GAAGTTATCAGTCGACATGCCGGCTGCGGTTGTAACTTCTGATGATGTCG
CCATCAGCATCTTCCGCCAGCTGAGCGGACTGCTCCTCGTTTTTTGTTTG
CCGAACATCTCGGCGAGAAAGTGTTCCATCAGCAAAATTAACAGGCCGGG
CAGACCAGATCGTAGGGCCTTAAAGATGCGCCGTGGATCCACCGGGCTTA
CGTTCGCTTTCGTAAGCCGTTTTCTTCGGTACAGTACATGCGTGGCTCGA
GATCGGCATCTGGTGCGGATATTGGTGATGCGGATCCCGATGAGGATGTG
GGTGTTGACGTGGGGGAGGCTGCTGCTGCATGGGCAGTTGCTGCATTGCC
TGCCATGGGATCGGCGGTAGAAGCTTTCTAGACCAT
BS15344.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-27 13:08:42 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:08:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
unc-13-RG | 12914 | CG2999-RG | 420..773 | 17..370 | 1755 | 99.7 | Plus |
osa-RF | 10243 | CG7467-RF | 5222..5336 | 368..254 | 290 | 83.5 | Minus |
osa-RE | 9940 | CG7467-RE | 4919..5033 | 368..254 | 290 | 83.5 | Minus |
osa-RF | 10243 | CG7467-RF | 5443..5538 | 245..150 | 255 | 84.4 | Minus |
osa-RF | 10243 | CG7467-RF | 5666..5738 | 118..47 | 195 | 87.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:08:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 907334..907554 | 370..150 | 1105 | 100 | Minus |
4 | 1348131 | 4 | 907620..907756 | 153..17 | 670 | 99.3 | Minus |
3R | 32079331 | 3R | 2925169..2925306 | 17..153 | 340 | 84.8 | Plus |
3R | 32079331 | 3R | 2996823..2996960 | 153..17 | 340 | 84.8 | Minus |
3R | 32079331 | 3R | 17692725..17692839 | 254..368 | 290 | 83.5 | Plus |
2R | 25286936 | 2R | 1247305..1247434 | 145..16 | 270 | 84 | Minus |
3R | 32079331 | 3R | 17692523..17692618 | 150..245 | 255 | 84.4 | Plus |
3R | 32079331 | 3R | 3344376..3344501 | 24..148 | 250 | 81.7 | Plus |
3R | 32079331 | 3R | 3467361..3467455 | 243..149 | 250 | 84.2 | Minus |
2R | 25286936 | 2R | 1459668..1459774 | 153..48 | 230 | 83.2 | Minus |
3R | 32079331 | 3R | 3519179..3519265 | 281..367 | 225 | 83.9 | Plus |
2L | 23513712 | 2L | 22340894..22340988 | 244..150 | 220 | 82.1 | Minus |
3R | 32079331 | 3R | 3467179..3467251 | 367..295 | 200 | 84.9 | Minus |
3R | 32079331 | 3R | 17692323..17692395 | 47..118 | 195 | 87.7 | Plus |
3R | 32079331 | 3R | 3344679..3344794 | 254..370 | 190 | 79.5 | Plus |
2R | 25286936 | 2R | 4329414..4329458 | 65..21 | 180 | 93.3 | Minus |
Blast to na_te.dros performed 2014-11-27 13:08:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6801..6962 | 375..211 | 133 | 55.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2417 | 343..260 | 132 | 61.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2327..2419 | 353..261 | 123 | 59.1 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2441..2524 | 344..261 | 123 | 60.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2340..2422 | 343..261 | 118 | 60.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2828..2874 | 344..298 | 109 | 70.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2618..2665 | 344..297 | 105 | 68.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2485..2539 | 345..291 | 104 | 65.5 | Minus |
BS15344.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:32:49 Download gff for
BS15344.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32021-RA | 1..354 | 17..370 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:05:20 Download gff for
BS15344.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32021-RA | 270..638 | 8..383 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed on 2013-08-04 11:59:30 has no hits.
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:32:49 Download gff for
BS15344.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32021-RA | 270..638 | 8..383 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:11:51 Download gff for
BS15344.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
unc-13-RG | 420..773 | 17..370 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:11:51 Download gff for
BS15344.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 907334..907550 | 154..370 | 100 | <- | Minus |
4 | 907620..907756 | 17..153 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:59:30 Download gff for
BS15344.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 927960..928176 | 154..370 | 100 | <- | Minus |
arm_4 | 928246..928382 | 17..153 | 99 | | Minus |
BS15344.pep Sequence
Translation from 16 to 369
> BS15344.pep
MPAAVVTSDDVAISIFRQLSGLLLVFCLPNISARKCSISKINRPGRPDRR
ALKMRRGSTGLTFAFVSRFLRYSTCVARDRHLVRILVMRIPMRMWVLTWG
RLLLHGQLLHCLPWDRR*
Sequence BS15344.pep has no blast hits.