Clone BS15348 Report

Search the DGRC for BS15348

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:153
Well:48
Vector:pDNR-Dual
Associated Gene/TranscriptCG7484-RB
Protein status:BS15348.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15348.3prime Sequence

567 bp (567 high quality bases) assembled on 2006-10-24

> BS15348.3prime
ATGGTCTAGAAAGCTTTTAGATCCTGTTGGTTCGCAGGTAATCTTCATCG
TCATCTCCATCGGCATCCTCCACCACGCTGTACGAATTCTTGCCGGCACC
ATCCTTGGCCAGATGCGTTTCGAAGAACTCCTCGACAGTGTCTGTGTTCC
ACTTGGTTATGGACAACGTCTCCTGCACTTTGCCACTGGCATCTAGGAGC
TTAACCACGGGATCCAGTCCTCTTACGTATTTGATCTGCAGGTTGGGGAA
CTTGGCAGGTCGGCCGCTTTGAATAAAGGCCTGAATCTGCGGATAGGCCC
GGAATTTGCAGGTGCACACCTCCAGAATTGCCTTGGCATATGTCCGCTGT
GCCGCCGGCTGCTGATCCAAAGTGCAGCATTGCTTACACTGAGGCTTGAT
GGTATCCAATCCGAAATCATCCAGTTTTTCGCAACTGGAACACATTAACT
GGGCCTTAATAAAACCCAACGCCCGGCAGTCGGCGGCCGTCAATTCGGCT
TGAATTTGCTGGCAACTTAAAGCCAGTAGAAGAAATATAGCACATTTATG
CATGTCGACTGATAACT

BS15348.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:19:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG7484-PB 537 CG7484-RB 1..537 553..17 2685 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:42:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG7484-RB 657 CG7484-RB 72..610 553..15 2695 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:42:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17655214..17655598 399..15 1910 99.7 Minus
3L 28110227 3L 17654782..17654901 514..395 600 100 Minus
3L 28110227 3L 17654688..17654726 553..515 195 100 Minus
Blast to na_te.dros performed on 2015-02-11 04:42:56 has no hits.

BS15348.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:24:22 Download gff for BS15348.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7484-PB 1..537 17..553 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:00:20 Download gff for BS15348.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7484-PB 1..537 17..553 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:39:08 Download gff for BS15348.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7484-RB 72..610 15..553 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:18:32 Download gff for BS15348.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7484-RB 72..610 15..553 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:18:32 Download gff for BS15348.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 17655218..17655598 15..395 100   Minus
3L 17654688..17654726 515..553 100 -> Minus
3L 17654782..17654900 396..514 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:39:08 Download gff for BS15348.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17647788..17647826 515..553 100 -> Minus
arm_3L 17647882..17648000 396..514 100 -> Minus
arm_3L 17648318..17648698 15..395 100   Minus

BS15348.5prime Sequence

567 bp (567 high quality bases) assembled on 2006-10-24

> BS15348.5prime
GAAGTTACCTGTCGAGATGCATAAATGTGCTATATTTCTTCTACTGGCTT
TAAGTTGCCAGCAAATTCAAGCCGAATTGACGGCCGCCGACTGCCGGGCG
TTGGGTTTTATTAAGGCCCAGTTAATGTGTTCCAGTTGCGAAAAACTGGA
TGATTTCGGATTGGATACCATCAAGCCTCAGTGTAAGCAATGCTGCACTT
TGGATCAGCAGCCGGCGGCACAGCGGACATATGCCAAGGCAATTCTGGAG
GTGTGCACCTGCAAATTCCGGGCCTATCCGCAGATTCAGGCCTTTATTCA
AAGCGGCCGACCTGCCAAGTTCCCCAACCTGCAGATCAAATACGTAAGAG
GACTGGATCCCGTGGTTAAGCTCCTAGATGCCAGTGGCAAAGTGCAGGAG
ACGTTGTCCATAACCAAGTGGAACACAGACACTGTCGAGGAGTTCTTCGA
AACGCATCTGGCCAAGGATGGTGCCGGCAAGAATTCGTACAGCGTGGTGG
AGGATGCCGATGGAGATGACGATGAAGATTACCTGCGAACCAACAGGATC
TAAAAGCTTTCTAGACC

BS15348.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:19:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG7484-PB 537 CG7484-RB 1..537 17..553 2685 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:27:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG7484-RB 657 CG7484-RB 72..610 17..555 2695 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:27:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17655214..17655598 171..555 1910 99.7 Plus
3L 28110227 3L 17654782..17654901 56..175 600 100 Plus
3L 28110227 3L 17654688..17654726 17..55 195 100 Plus
Blast to na_te.dros performed on 2015-02-12 10:27:08 has no hits.

BS15348.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:24:23 Download gff for BS15348.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7484-PB 1..537 17..553 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:00:22 Download gff for BS15348.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7484-PB 1..537 17..553 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:57:23 Download gff for BS15348.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7484-RB 72..610 17..555 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:04:24 Download gff for BS15348.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7484-RB 72..610 17..555 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:04:24 Download gff for BS15348.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 17654688..17654726 17..55 100 -> Plus
3L 17654782..17654900 56..174 100 -> Plus
3L 17655218..17655598 175..555 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:57:23 Download gff for BS15348.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17647788..17647826 17..55 100 -> Plus
arm_3L 17647882..17648000 56..174 100 -> Plus
arm_3L 17648318..17648698 175..555 100   Plus

BS15348.complete Sequence

569 bp assembled on 2006-11-01

> BS15348.complete
GAAGTTATCAGTCGACATGCATAAATGTGCTATATTTCTTCTACTGGCTT
TAAGTTGCCAGCAAATTCAAGCCGAATTGACGGCCGCCGACTGCCGGGCG
TTGGGTTTTATTAAGGCCCAGTTAATGTGTTCCAGTTGCGAAAAACTGGA
TGATTTCGGATTGGATACCATCAAGCCTCAGTGTAAGCAATGCTGCACTT
TGGATCAGCAGCCGGCGGCACAGCGGACATATGCCAAGGCAATTCTGGAG
GTGTGCACCTGCAAATTCCGGGCCTATCCGCAGATTCAGGCCTTTATTCA
AAGCGGCCGACCTGCCAAGTTCCCCAACCTGCAGATCAAATACGTAAGAG
GACTGGATCCCGTGGTTAAGCTCCTAGATGCCAGTGGCAAAGTGCAGGAG
ACGTTGTCCATAACCAAGTGGAACACAGACACTGTCGAGGAGTTCTTCGA
AACGCATCTGGCCAAGGATGGTGCCGGCAAGAATTCGTACAGCGTGGTGG
AGGATGCCGATGGAGATGACGATGAAGATTACCTGCGAACCAACAGGATC
TAAAAGCTTTCTAGACCAT

BS15348.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:01:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG7484-RB 537 CG7484-PB 1..537 17..553 2685 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:01:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG7484-RB 657 CG7484-RB 72..610 17..555 2695 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:01:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17655214..17655598 171..555 1910 99.7 Plus
3L 28110227 3L 17654782..17654901 56..175 600 100 Plus
3L 28110227 3L 17654688..17654726 17..55 195 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:01:02 has no hits.

BS15348.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:32:50 Download gff for BS15348.complete
Subject Subject Range Query Range Percent Splice Strand
CG7484-RB 1..537 17..553 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:05:22 Download gff for BS15348.complete
Subject Subject Range Query Range Percent Splice Strand
CG7484-RB 58..596 17..555 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:43 Download gff for BS15348.complete
Subject Subject Range Query Range Percent Splice Strand
CG7484-RB 72..606 17..551 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:32:51 Download gff for BS15348.complete
Subject Subject Range Query Range Percent Splice Strand
CG7484-RB 58..596 17..555 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:08:23 Download gff for BS15348.complete
Subject Subject Range Query Range Percent Splice Strand
CG7484-RB 72..606 17..551 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:08:23 Download gff for BS15348.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17654688..17654726 17..55 100 -> Plus
3L 17654782..17654900 56..174 100 -> Plus
3L 17655218..17655594 175..551 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:43 Download gff for BS15348.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17647788..17647826 17..55 100 -> Plus
arm_3L 17647882..17648000 56..174 100 -> Plus
arm_3L 17648318..17648694 175..551 100   Plus

BS15348.pep Sequence

Translation from 16 to 552

> BS15348.pep
MHKCAIFLLLALSCQQIQAELTAADCRALGFIKAQLMCSSCEKLDDFGLD
TIKPQCKQCCTLDQQPAAQRTYAKAILEVCTCKFRAYPQIQAFIQSGRPA
KFPNLQIKYVRGLDPVVKLLDASGKVQETLSITKWNTDTVEEFFETHLAK
DGAGKNSYSVVEDADGDDDEDYLRTNRI*

BS15348.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:00:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG7484-PB 178 CG7484-PB 1..178 1..178 937 100 Plus