Clone Sequence Records
BS15348.3prime Sequence
567 bp (567 high quality bases) assembled on 2006-10-24
> BS15348.3prime
ATGGTCTAGAAAGCTTTTAGATCCTGTTGGTTCGCAGGTAATCTTCATCG
TCATCTCCATCGGCATCCTCCACCACGCTGTACGAATTCTTGCCGGCACC
ATCCTTGGCCAGATGCGTTTCGAAGAACTCCTCGACAGTGTCTGTGTTCC
ACTTGGTTATGGACAACGTCTCCTGCACTTTGCCACTGGCATCTAGGAGC
TTAACCACGGGATCCAGTCCTCTTACGTATTTGATCTGCAGGTTGGGGAA
CTTGGCAGGTCGGCCGCTTTGAATAAAGGCCTGAATCTGCGGATAGGCCC
GGAATTTGCAGGTGCACACCTCCAGAATTGCCTTGGCATATGTCCGCTGT
GCCGCCGGCTGCTGATCCAAAGTGCAGCATTGCTTACACTGAGGCTTGAT
GGTATCCAATCCGAAATCATCCAGTTTTTCGCAACTGGAACACATTAACT
GGGCCTTAATAAAACCCAACGCCCGGCAGTCGGCGGCCGTCAATTCGGCT
TGAATTTGCTGGCAACTTAAAGCCAGTAGAAGAAATATAGCACATTTATG
CATGTCGACTGATAACT
BS15348.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:19:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7484-PB | 537 | CG7484-RB | 1..537 | 553..17 | 2685 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:42:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7484-RB | 657 | CG7484-RB | 72..610 | 553..15 | 2695 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:42:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17655214..17655598 | 399..15 | 1910 | 99.7 | Minus |
3L | 28110227 | 3L | 17654782..17654901 | 514..395 | 600 | 100 | Minus |
3L | 28110227 | 3L | 17654688..17654726 | 553..515 | 195 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:42:56 has no hits.
BS15348.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:24:22 Download gff for
BS15348.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7484-PB | 1..537 | 17..553 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:00:20 Download gff for
BS15348.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7484-PB | 1..537 | 17..553 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:39:08 Download gff for
BS15348.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7484-RB | 72..610 | 15..553 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:18:32 Download gff for
BS15348.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7484-RB | 72..610 | 15..553 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:18:32 Download gff for
BS15348.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17655218..17655598 | 15..395 | 100 | | Minus |
3L | 17654688..17654726 | 515..553 | 100 | -> | Minus |
3L | 17654782..17654900 | 396..514 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:39:08 Download gff for
BS15348.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17647788..17647826 | 515..553 | 100 | -> | Minus |
arm_3L | 17647882..17648000 | 396..514 | 100 | -> | Minus |
arm_3L | 17648318..17648698 | 15..395 | 100 | | Minus |
BS15348.5prime Sequence
567 bp (567 high quality bases) assembled on 2006-10-24
> BS15348.5prime
GAAGTTACCTGTCGAGATGCATAAATGTGCTATATTTCTTCTACTGGCTT
TAAGTTGCCAGCAAATTCAAGCCGAATTGACGGCCGCCGACTGCCGGGCG
TTGGGTTTTATTAAGGCCCAGTTAATGTGTTCCAGTTGCGAAAAACTGGA
TGATTTCGGATTGGATACCATCAAGCCTCAGTGTAAGCAATGCTGCACTT
TGGATCAGCAGCCGGCGGCACAGCGGACATATGCCAAGGCAATTCTGGAG
GTGTGCACCTGCAAATTCCGGGCCTATCCGCAGATTCAGGCCTTTATTCA
AAGCGGCCGACCTGCCAAGTTCCCCAACCTGCAGATCAAATACGTAAGAG
GACTGGATCCCGTGGTTAAGCTCCTAGATGCCAGTGGCAAAGTGCAGGAG
ACGTTGTCCATAACCAAGTGGAACACAGACACTGTCGAGGAGTTCTTCGA
AACGCATCTGGCCAAGGATGGTGCCGGCAAGAATTCGTACAGCGTGGTGG
AGGATGCCGATGGAGATGACGATGAAGATTACCTGCGAACCAACAGGATC
TAAAAGCTTTCTAGACC
BS15348.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:19:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7484-PB | 537 | CG7484-RB | 1..537 | 17..553 | 2685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:27:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7484-RB | 657 | CG7484-RB | 72..610 | 17..555 | 2695 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:27:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17655214..17655598 | 171..555 | 1910 | 99.7 | Plus |
3L | 28110227 | 3L | 17654782..17654901 | 56..175 | 600 | 100 | Plus |
3L | 28110227 | 3L | 17654688..17654726 | 17..55 | 195 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:27:08 has no hits.
BS15348.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:24:23 Download gff for
BS15348.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7484-PB | 1..537 | 17..553 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:00:22 Download gff for
BS15348.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7484-PB | 1..537 | 17..553 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:57:23 Download gff for
BS15348.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7484-RB | 72..610 | 17..555 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:04:24 Download gff for
BS15348.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7484-RB | 72..610 | 17..555 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:04:24 Download gff for
BS15348.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17654688..17654726 | 17..55 | 100 | -> | Plus |
3L | 17654782..17654900 | 56..174 | 100 | -> | Plus |
3L | 17655218..17655598 | 175..555 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:57:23 Download gff for
BS15348.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17647788..17647826 | 17..55 | 100 | -> | Plus |
arm_3L | 17647882..17648000 | 56..174 | 100 | -> | Plus |
arm_3L | 17648318..17648698 | 175..555 | 100 | | Plus |
BS15348.complete Sequence
569 bp assembled on 2006-11-01
> BS15348.complete
GAAGTTATCAGTCGACATGCATAAATGTGCTATATTTCTTCTACTGGCTT
TAAGTTGCCAGCAAATTCAAGCCGAATTGACGGCCGCCGACTGCCGGGCG
TTGGGTTTTATTAAGGCCCAGTTAATGTGTTCCAGTTGCGAAAAACTGGA
TGATTTCGGATTGGATACCATCAAGCCTCAGTGTAAGCAATGCTGCACTT
TGGATCAGCAGCCGGCGGCACAGCGGACATATGCCAAGGCAATTCTGGAG
GTGTGCACCTGCAAATTCCGGGCCTATCCGCAGATTCAGGCCTTTATTCA
AAGCGGCCGACCTGCCAAGTTCCCCAACCTGCAGATCAAATACGTAAGAG
GACTGGATCCCGTGGTTAAGCTCCTAGATGCCAGTGGCAAAGTGCAGGAG
ACGTTGTCCATAACCAAGTGGAACACAGACACTGTCGAGGAGTTCTTCGA
AACGCATCTGGCCAAGGATGGTGCCGGCAAGAATTCGTACAGCGTGGTGG
AGGATGCCGATGGAGATGACGATGAAGATTACCTGCGAACCAACAGGATC
TAAAAGCTTTCTAGACCAT
BS15348.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:01:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7484-RB | 537 | CG7484-PB | 1..537 | 17..553 | 2685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:01:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7484-RB | 657 | CG7484-RB | 72..610 | 17..555 | 2695 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:01:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17655214..17655598 | 171..555 | 1910 | 99.7 | Plus |
3L | 28110227 | 3L | 17654782..17654901 | 56..175 | 600 | 100 | Plus |
3L | 28110227 | 3L | 17654688..17654726 | 17..55 | 195 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:01:02 has no hits.
BS15348.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:32:50 Download gff for
BS15348.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7484-RB | 1..537 | 17..553 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:05:22 Download gff for
BS15348.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7484-RB | 58..596 | 17..555 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:43 Download gff for
BS15348.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7484-RB | 72..606 | 17..551 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:32:51 Download gff for
BS15348.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7484-RB | 58..596 | 17..555 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:08:23 Download gff for
BS15348.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7484-RB | 72..606 | 17..551 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:08:23 Download gff for
BS15348.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17654688..17654726 | 17..55 | 100 | -> | Plus |
3L | 17654782..17654900 | 56..174 | 100 | -> | Plus |
3L | 17655218..17655594 | 175..551 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:43 Download gff for
BS15348.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17647788..17647826 | 17..55 | 100 | -> | Plus |
arm_3L | 17647882..17648000 | 56..174 | 100 | -> | Plus |
arm_3L | 17648318..17648694 | 175..551 | 100 | | Plus |
BS15348.pep Sequence
Translation from 16 to 552
> BS15348.pep
MHKCAIFLLLALSCQQIQAELTAADCRALGFIKAQLMCSSCEKLDDFGLD
TIKPQCKQCCTLDQQPAAQRTYAKAILEVCTCKFRAYPQIQAFIQSGRPA
KFPNLQIKYVRGLDPVVKLLDASGKVQETLSITKWNTDTVEEFFETHLAK
DGAGKNSYSVVEDADGDDDEDYLRTNRI*
BS15348.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:00:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7484-PB | 178 | CG7484-PB | 1..178 | 1..178 | 937 | 100 | Plus |