Clone Sequence Records
BS15350.3prime Sequence
417 bp (417 high quality bases) assembled on 2006-10-24
> BS15350.3prime
ATGGTCTAGAAAGCTTCTCCCTTGTGGCCAGAATCCGGGTGAATCCCAGG
CAGGCGGAGACGATGGTCTGGCCGAGGCCCCAGATCATGGCGTATATGGG
CGACATGGGCAGACTGGAGGCACGATGCACAAAGGCGATGACTGCACTGC
TGATGATGCCACTGGAGGCCGGGGAAAGGAATCCCATGACAAGGATGAGG
ATCGAGAAGAATCGTCCGAACTTGTGCTTCCGGAGCGTGAAGAAGGCCAC
CACGGCGGCGCAGGTGTGAATGAATATGGAGGAGAACAGGGCCCACAGAA
AGACGTGGTACCACATTTCGCGAAACGTATTGAGACGCGCCTGTGACCGG
AGTCCCATCACATCGGCGATGGTGTCCAACTCATCGGTGTCGTCCGAGAA
CATGTCGACTGATAACT
BS15350.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:19:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12341-PA | 387 | CG12341-RA | 1..380 | 403..24 | 1825 | 99.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:27:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12341-RA | 1100 | CG12341-RA | 507..887 | 404..24 | 1860 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:27:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10812370..10812750 | 24..404 | 1860 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:27:29 has no hits.
BS15350.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:24:24 Download gff for
BS15350.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12341-PA | 1..387 | 21..403 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:00:23 Download gff for
BS15350.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12341-PA | 1..387 | 21..403 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:57:29 Download gff for
BS15350.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12341-RA | 507..887 | 24..404 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:05:11 Download gff for
BS15350.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12341-RA | 507..887 | 24..404 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:05:11 Download gff for
BS15350.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10812370..10812750 | 24..404 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:57:29 Download gff for
BS15350.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6699875..6700255 | 24..404 | 99 | | Plus |
BS15350.5prime Sequence
418 bp (418 high quality bases) assembled on 2006-10-24
> BS15350.5prime
GAAGTTATCCGTCGACATGTTCTCGGACGACACCGATGAGTTGGACACCA
TCGCCGATGTGATGGGACTCCGGTCACAGGCGCTTCTCAGGTACGTTTCG
CGAAATGTGGTACCACGTCTTTCTGTGGGCCCTGTTCTCCTCCATATTCA
TTCACACCTGCGCCGCCGTGGTGGCCTTCTTCACGCTCCGGAAGCACAAG
TTCGGACGATTCTTCTCGATCCTCATCCTTGTCATGGGATTCCTTTCCCC
GGCCTCCAGTGGCATCATCAGCAGTGCAGTCATCGCCTTTGTGCATCGTG
CCTCCAGTCTGCCCATGTCGCCCATATACGCCATGATCTGGGGCCTCGGC
CAGACCATCGTCTCCGCCTGCCTGGGATTCACCCGGATTCTGGCCACGCT
ATAGAAGCTTTCTAGACC
BS15350.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:19:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12341-PA | 387 | CG12341-RA | 75..387 | 92..404 | 1490 | 99 | Plus |
CG12341-PA | 387 | CG12341-RA | 1..73 | 17..89 | 340 | 98.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:54:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12341-RA | 1100 | CG12341-RA | 507..895 | 16..405 | 1850 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:54:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10812362..10812750 | 405..16 | 1825 | 98.5 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:54:39 has no hits.
BS15350.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:24:25 Download gff for
BS15350.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12341-PA | 1..387 | 17..404 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:00:25 Download gff for
BS15350.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12341-PA | 1..387 | 17..404 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:24:31 Download gff for
BS15350.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12341-RA | 507..897 | 16..408 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:02:57 Download gff for
BS15350.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12341-RA | 507..897 | 16..408 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:02:57 Download gff for
BS15350.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10812360..10812750 | 16..408 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:24:31 Download gff for
BS15350.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6699865..6700255 | 16..408 | 98 | | Minus |
BS15350.complete Sequence
419 bp assembled on 2006-11-01
GenBank Submission: FJ637923
> BS15350.complete
GAAGTTATCAGTCGACATGTTCTCGGACGACACCGATGAGTTGGACACCA
TCGCCGATGTGATGGGACTCCGGTCACAGGCGCGTCTCAATACGTTTCGC
GAAATGTGGTACCACGTCTTTCTGTGGGCCCTGTTCTCCTCCATATTCAT
TCACACCTGCGCCGCCGTGGTGGCCTTCTTCACGCTCCGGAAGCACAAGT
TCGGACGATTCTTCTCGATCCTCATCCTTGTCATGGGATTCCTTTCCCCG
GCCTCCAGTGGCATCATCAGCAGTGCAGTCATCGCCTTTGTGCATCGTGC
CTCCAGTCTGCCCATGTCGCCCATATACGCCATGATCTGGGGCCTCGGCC
AGACCATCGTCTCCGCCTGCCTGGGATTCACCCGGATTCTGGCCACGCTA
TAGAAGCTTTCTAGACCAT
BS15350.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:27:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12341-RA | 387 | CG12341-PA | 1..387 | 17..403 | 1890 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:27:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12341-RA | 1100 | CG12341-RA | 507..895 | 16..404 | 1900 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:26:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10812362..10812750 | 404..16 | 1900 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:27:00 has no hits.
BS15350.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:24:56 Download gff for
BS15350.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12341-RA | 1..387 | 17..403 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:56:19 Download gff for
BS15350.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12341-RA | 527..917 | 16..407 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:43:30 Download gff for
BS15350.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12341-RA | 513..894 | 22..403 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:24:56 Download gff for
BS15350.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12341-RA | 527..917 | 16..407 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:18:36 Download gff for
BS15350.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12341-RA | 513..894 | 22..403 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:18:36 Download gff for
BS15350.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10812363..10812744 | 22..403 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:43:30 Download gff for
BS15350.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6699868..6700249 | 22..403 | 99 | | Minus |
BS15350.pep Sequence
Translation from 16 to 402
> BS15350.pep
MFSDDTDELDTIADVMGLRSQARLNTFREMWYHVFLWALFSSIFIHTCAA
VVAFFTLRKHKFGRFFSILILVMGFLSPASSGIISSAVIAFVHRASSLPM
SPIYAMIWGLGQTIVSACLGFTRILATL*
BS15350.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:13:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12341-PA | 128 | CG12341-PA | 1..128 | 1..128 | 653 | 100 | Plus |