Clone BS15350 Report

Search the DGRC for BS15350

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:153
Well:50
Vector:pDNR-Dual
Associated Gene/TranscriptCG12341-RA
Protein status:BS15350.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15350.3prime Sequence

417 bp (417 high quality bases) assembled on 2006-10-24

> BS15350.3prime
ATGGTCTAGAAAGCTTCTCCCTTGTGGCCAGAATCCGGGTGAATCCCAGG
CAGGCGGAGACGATGGTCTGGCCGAGGCCCCAGATCATGGCGTATATGGG
CGACATGGGCAGACTGGAGGCACGATGCACAAAGGCGATGACTGCACTGC
TGATGATGCCACTGGAGGCCGGGGAAAGGAATCCCATGACAAGGATGAGG
ATCGAGAAGAATCGTCCGAACTTGTGCTTCCGGAGCGTGAAGAAGGCCAC
CACGGCGGCGCAGGTGTGAATGAATATGGAGGAGAACAGGGCCCACAGAA
AGACGTGGTACCACATTTCGCGAAACGTATTGAGACGCGCCTGTGACCGG
AGTCCCATCACATCGGCGATGGTGTCCAACTCATCGGTGTCGTCCGAGAA
CATGTCGACTGATAACT

BS15350.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:19:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG12341-PA 387 CG12341-RA 1..380 403..24 1825 99.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:27:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG12341-RA 1100 CG12341-RA 507..887 404..24 1860 99.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:27:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10812370..10812750 24..404 1860 99.2 Plus
Blast to na_te.dros performed on 2015-02-12 10:27:29 has no hits.

BS15350.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:24:24 Download gff for BS15350.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12341-PA 1..387 21..403 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:00:23 Download gff for BS15350.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12341-PA 1..387 21..403 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:57:29 Download gff for BS15350.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12341-RA 507..887 24..404 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:05:11 Download gff for BS15350.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12341-RA 507..887 24..404 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:05:11 Download gff for BS15350.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 10812370..10812750 24..404 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:57:29 Download gff for BS15350.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6699875..6700255 24..404 99   Plus

BS15350.5prime Sequence

418 bp (418 high quality bases) assembled on 2006-10-24

> BS15350.5prime
GAAGTTATCCGTCGACATGTTCTCGGACGACACCGATGAGTTGGACACCA
TCGCCGATGTGATGGGACTCCGGTCACAGGCGCTTCTCAGGTACGTTTCG
CGAAATGTGGTACCACGTCTTTCTGTGGGCCCTGTTCTCCTCCATATTCA
TTCACACCTGCGCCGCCGTGGTGGCCTTCTTCACGCTCCGGAAGCACAAG
TTCGGACGATTCTTCTCGATCCTCATCCTTGTCATGGGATTCCTTTCCCC
GGCCTCCAGTGGCATCATCAGCAGTGCAGTCATCGCCTTTGTGCATCGTG
CCTCCAGTCTGCCCATGTCGCCCATATACGCCATGATCTGGGGCCTCGGC
CAGACCATCGTCTCCGCCTGCCTGGGATTCACCCGGATTCTGGCCACGCT
ATAGAAGCTTTCTAGACC

BS15350.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:19:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG12341-PA 387 CG12341-RA 75..387 92..404 1490 99 Plus
CG12341-PA 387 CG12341-RA 1..73 17..89 340 98.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:54:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG12341-RA 1100 CG12341-RA 507..895 16..405 1850 98.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:54:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10812362..10812750 405..16 1825 98.5 Minus
Blast to na_te.dros performed on 2015-02-13 00:54:39 has no hits.

BS15350.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:24:25 Download gff for BS15350.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12341-PA 1..387 17..404 98   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:00:25 Download gff for BS15350.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12341-PA 1..387 17..404 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:24:31 Download gff for BS15350.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12341-RA 507..897 16..408 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:02:57 Download gff for BS15350.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12341-RA 507..897 16..408 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:02:57 Download gff for BS15350.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10812360..10812750 16..408 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:24:31 Download gff for BS15350.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6699865..6700255 16..408 98   Minus

BS15350.complete Sequence

419 bp assembled on 2006-11-01

GenBank Submission: FJ637923

> BS15350.complete
GAAGTTATCAGTCGACATGTTCTCGGACGACACCGATGAGTTGGACACCA
TCGCCGATGTGATGGGACTCCGGTCACAGGCGCGTCTCAATACGTTTCGC
GAAATGTGGTACCACGTCTTTCTGTGGGCCCTGTTCTCCTCCATATTCAT
TCACACCTGCGCCGCCGTGGTGGCCTTCTTCACGCTCCGGAAGCACAAGT
TCGGACGATTCTTCTCGATCCTCATCCTTGTCATGGGATTCCTTTCCCCG
GCCTCCAGTGGCATCATCAGCAGTGCAGTCATCGCCTTTGTGCATCGTGC
CTCCAGTCTGCCCATGTCGCCCATATACGCCATGATCTGGGGCCTCGGCC
AGACCATCGTCTCCGCCTGCCTGGGATTCACCCGGATTCTGGCCACGCTA
TAGAAGCTTTCTAGACCAT

BS15350.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:27:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG12341-RA 387 CG12341-PA 1..387 17..403 1890 99.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:27:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG12341-RA 1100 CG12341-RA 507..895 16..404 1900 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:26:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10812362..10812750 404..16 1900 99.2 Minus
Blast to na_te.dros performed on 2014-11-27 13:27:00 has no hits.

BS15350.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:24:56 Download gff for BS15350.complete
Subject Subject Range Query Range Percent Splice Strand
CG12341-RA 1..387 17..403 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:56:19 Download gff for BS15350.complete
Subject Subject Range Query Range Percent Splice Strand
CG12341-RA 527..917 16..407 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:43:30 Download gff for BS15350.complete
Subject Subject Range Query Range Percent Splice Strand
CG12341-RA 513..894 22..403 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:24:56 Download gff for BS15350.complete
Subject Subject Range Query Range Percent Splice Strand
CG12341-RA 527..917 16..407 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:18:36 Download gff for BS15350.complete
Subject Subject Range Query Range Percent Splice Strand
CG12341-RA 513..894 22..403 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:18:36 Download gff for BS15350.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10812363..10812744 22..403 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:43:30 Download gff for BS15350.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6699868..6700249 22..403 99   Minus

BS15350.pep Sequence

Translation from 16 to 402

> BS15350.pep
MFSDDTDELDTIADVMGLRSQARLNTFREMWYHVFLWALFSSIFIHTCAA
VVAFFTLRKHKFGRFFSILILVMGFLSPASSGIISSAVIAFVHRASSLPM
SPIYAMIWGLGQTIVSACLGFTRILATL*

BS15350.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:13:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG12341-PA 128 CG12341-PA 1..128 1..128 653 100 Plus