Clone BS15351 Report

Search the DGRC for BS15351

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:153
Well:51
Vector:pDNR-Dual
Associated Gene/TranscriptRpS8-RC
Protein status:BS15351.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15351.3prime Sequence

657 bp (657 high quality bases) assembled on 2006-10-24

> BS15351.3prime
ATGGTCTAGAAAGCTTTTATTTCTTAGACTTGATCTTCTTAAGGTAGAAT
TCCAACTCCTTGCCTTCCAAAATGTAGCCGTCGGAGCGACCGCACTGTCC
GGGGCGGGAAGAAATGCAAGCCAAGATGCGGCCGGAGGTGAACTGATCCT
CGAGGGCCTGCTCGACCTTGCCGTACTTCTGGCGCTCCAGGTACTTCTTC
ATAACCTTTTCGCTGCGCTTCTTGGTCAGCACGTCGTTCTCGTCCTCCTT
CTGGGCGTGCTTGGGGTTACGCTTGCGTCCCAGGGGCAGCACGTAGTGAG
CCTCGTACCACTGGCGGAAGGGCGTGGCATCGATGACCACGATGCTGTTC
TTCACCAAGGTCTTGGTTCGCACCAGCTCGTTGTTGGAGGCGTTGTACAC
AACATCGGCGATACGGGTCTTGCGCGCCACTCCCTCGGAGGCCCAGGCGA
AGTTTCCGGTTTCCAGGCGCAGAGCACGGAGCTTGGTGTTTCCACCACGG
GTGCGCACCTTGTGCACGCGGCCGGAGCCAAGCTTGGTGTTGGCGGCGGG
GCGTCCCAACTCGAACTTGCGCTTCTTGCGGAGCGACTTGCGCTTGCCTC
CGGTGGCCCGGCGTTTGTGTGCACTATCGCGGCTAATACCCATGTCGACT
GATAACT

BS15351.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:19:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG7808-PC 627 RpS8-RC 1..627 643..17 3110 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:09:05
Subject Length Description Subject Range Query Range Score Percent Strand
RpS8-RG 931 CG7808-RG 238..867 645..16 3135 99.8 Minus
RpS8-RF 726 CG7808-RF 33..662 645..16 3135 99.8 Minus
RpS8-RE 756 CG7808-RE 63..692 645..16 3135 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:08:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29862783..29863196 534..121 2055 99.8 Minus
3R 32079331 3R 29862198..29862305 640..533 540 100 Minus
3R 32079331 3R 29863414..29863519 121..16 530 100 Minus
Blast to na_te.dros performed on 2015-02-13 07:09:03 has no hits.

BS15351.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:24:27 Download gff for BS15351.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7808-PC 1..627 17..643 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:00:27 Download gff for BS15351.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7808-PC 1..627 17..643 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:51:12 Download gff for BS15351.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS8-RC 22..671 5..655 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:30:09 Download gff for BS15351.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS8-RE 52..701 5..655 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:30:09 Download gff for BS15351.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 29862192..29862305 533..648 96 -> Minus
3R 29862785..29863196 121..532 99 -> Minus
3R 29863415..29863528 5..120 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:51:12 Download gff for BS15351.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25687914..25688027 533..648 96 -> Minus
arm_3R 25688507..25688918 121..532 99 -> Minus
arm_3R 25689137..25689250 5..120 96   Minus

BS15351.5prime Sequence

657 bp (657 high quality bases) assembled on 2006-10-24

> BS15351.5prime
GAAGTTATCATTCGAGATGGGTATTAGCCGCGATAGTGCACACAAACGCC
GGGCCACCGGAGGCAAGCGCAAGTCGCTCCGCACGAAGCGCAAGTTCGAG
TTGGGACGCCCCGCCGCCAACACCAAGCTTGGCTCCGGCCGCGTGCACAA
GGTGCGCACCCGTGGTGGAAACACCAAGCTCCGTGCTCTGCGCCTGGAAA
CCGGAAACTTCGCCTGGGCCTCCGAGGGAGTGGCGCGCAAGACCCGTATC
GCCGATGTTGTGTACAACGCCTCCAACAACGAGCTGGTGCGAACCAAGAC
CTTGGTGAAGAACAGCATCGTGGTCATCGATGCCACGCCCTTCCGCCAGT
GGTACGAGGCTCACTACGTGCTGCCCCTGGGACGCAAGCGTAACCCCAAG
CACGCCCAGAAGGAGGACGAGAACGACGTGCTGACCAAGAAGCGCAGCGA
AAAGGTTATGAAGAAGTACCTGGAGCGCCAGAAGTACGGCAAGGTCGAGC
AGGCCCTCGAGGATCAGTTCACCTCCGGCCGCATCTTGGCTTGCATTTCT
TCCCGCCCCGGACAGTGCGGTCGCTCCGACGGCTACATTTTGGAAGGCAA
GGAGTTGGAATTCTACCTTAAGAAGATCAAGTCTAAGAAATAAAAGCTTT
CTAGACC

BS15351.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:19:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG7808-PC 627 RpS8-RC 1..627 17..643 3085 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:28:07
Subject Length Description Subject Range Query Range Score Percent Strand
RpS8-RG 931 CG7808-RG 240..867 17..644 3110 99.7 Plus
RpS8-RF 726 CG7808-RF 35..662 17..644 3110 99.7 Plus
RpS8-RE 756 CG7808-RE 65..692 17..644 3110 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:27:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29862783..29863196 126..539 2055 99.8 Plus
3R 32079331 3R 29863414..29863519 539..644 530 100 Plus
3R 32079331 3R 29862198..29862305 20..127 525 99.1 Plus
Blast to na_te.dros performed on 2015-02-10 16:28:03 has no hits.

BS15351.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:24:28 Download gff for BS15351.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7808-PC 1..627 17..643 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:00:28 Download gff for BS15351.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7808-PC 1..627 17..643 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:40:20 Download gff for BS15351.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS8-RC 22..671 5..655 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:32:08 Download gff for BS15351.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS8-RE 52..701 5..655 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:32:08 Download gff for BS15351.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 29862198..29862305 20..127 99 -> Plus
3R 29862785..29863196 128..539 99 -> Plus
3R 29863415..29863528 540..655 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:40:20 Download gff for BS15351.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25687920..25688027 20..127 99 -> Plus
arm_3R 25688507..25688918 128..539 99 -> Plus
arm_3R 25689137..25689250 540..655 96   Plus

BS15351.complete Sequence

659 bp assembled on 2006-11-01

GenBank Submission: FJ637924

> BS15351.complete
GAAGTTATCAGTCGACATGGGTATTAGCCGCGATAGTGCACACAAACGCC
GGGCCACCGGAGGCAAGCGCAAGTCGCTCCGCAAGAAGCGCAAGTTCGAG
TTGGGACGCCCCGCCGCCAACACCAAGCTTGGCTCCGGCCGCGTGCACAA
GGTGCGCACCCGTGGTGGAAACACCAAGCTCCGTGCTCTGCGCCTGGAAA
CCGGAAACTTCGCCTGGGCCTCCGAGGGAGTGGCGCGCAAGACCCGTATC
GCCGATGTTGTGTACAACGCCTCCAACAACGAGCTGGTGCGAACCAAGAC
CTTGGTGAAGAACAGCATCGTGGTCATCGATGCCACGCCCTTCCGCCAGT
GGTACGAGGCTCACTACGTGCTGCCCCTGGGACGCAAGCGTAACCCCAAG
CACGCCCAGAAGGAGGACGAGAACGACGTGCTGACCAAGAAGCGCAGCGA
AAAGGTTATGAAGAAGTACCTGGAGCGCCAGAAGTACGGCAAGGTCGAGC
AGGCCCTCGAGGATCAGTTCACCTCCGGCCGCATCTTGGCTTGCATTTCT
TCCCGCCCCGGACAGTGCGGTCGCTCCGACGGCTACATTTTGGAAGGCAA
GGAGTTGGAATTCTACCTTAAGAAGATCAAGTCTAAGAAATAAAAGCTTT
CTAGACCAT

BS15351.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:00:52
Subject Length Description Subject Range Query Range Score Percent Strand
RpS8-RG 627 CG7808-PG 1..627 17..643 3120 99.8 Plus
RpS8-RF 627 CG7808-PF 1..627 17..643 3120 99.8 Plus
RpS8-RE 627 CG7808-PE 1..627 17..643 3120 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:00:53
Subject Length Description Subject Range Query Range Score Percent Strand
RpS8-RG 931 CG7808-RG 238..867 15..644 3135 99.8 Plus
RpS8-RF 726 CG7808-RF 33..662 15..644 3135 99.8 Plus
RpS8-RE 756 CG7808-RE 63..692 15..644 3135 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:00:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29862783..29863196 126..539 2055 99.8 Plus
3R 32079331 3R 29862198..29862305 20..127 540 100 Plus
3R 32079331 3R 29863414..29863519 539..644 530 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:00:51 has no hits.

BS15351.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:32:52 Download gff for BS15351.complete
Subject Subject Range Query Range Percent Splice Strand
RpS8-RC 1..627 17..643 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:05:23 Download gff for BS15351.complete
Subject Subject Range Query Range Percent Splice Strand
RpS8-RC 52..701 5..655 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:38:07 Download gff for BS15351.complete
Subject Subject Range Query Range Percent Splice Strand
RpS8-RC 35..652 17..634 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:32:52 Download gff for BS15351.complete
Subject Subject Range Query Range Percent Splice Strand
RpS8-RC 52..701 5..655 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:31:59 Download gff for BS15351.complete
Subject Subject Range Query Range Percent Splice Strand
RpS8-RE 65..682 17..634 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:31:59 Download gff for BS15351.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29862197..29862305 17..127 98 -> Plus
3R 29862785..29863196 128..539 99 -> Plus
3R 29863415..29863509 540..634 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:38:07 Download gff for BS15351.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25689137..25689231 540..634 100   Plus
arm_3R 25687919..25688027 17..127 98 -> Plus
arm_3R 25688507..25688918 128..539 99 -> Plus

BS15351.pep Sequence

Translation from 16 to 642

> BS15351.pep
MGISRDSAHKRRATGGKRKSLRKKRKFELGRPAANTKLGSGRVHKVRTRG
GNTKLRALRLETGNFAWASEGVARKTRIADVVYNASNNELVRTKTLVKNS
IVVIDATPFRQWYEAHYVLPLGRKRNPKHAQKEDENDVLTKKRSEKVMKK
YLERQKYGKVEQALEDQFTSGRILACISSRPGQCGRSDGYILEGKELEFY
LKKIKSKK*

BS15351.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:30:53
Subject Length Description Subject Range Query Range Score Percent Strand
RpS8-PG 208 CG7808-PG 1..208 1..208 1068 100 Plus
RpS8-PF 208 CG7808-PF 1..208 1..208 1068 100 Plus
RpS8-PE 208 CG7808-PE 1..208 1..208 1068 100 Plus
RpS8-PC 208 CG7808-PC 1..208 1..208 1068 100 Plus