Clone Sequence Records
BS15351.3prime Sequence
657 bp (657 high quality bases) assembled on 2006-10-24
> BS15351.3prime
ATGGTCTAGAAAGCTTTTATTTCTTAGACTTGATCTTCTTAAGGTAGAAT
TCCAACTCCTTGCCTTCCAAAATGTAGCCGTCGGAGCGACCGCACTGTCC
GGGGCGGGAAGAAATGCAAGCCAAGATGCGGCCGGAGGTGAACTGATCCT
CGAGGGCCTGCTCGACCTTGCCGTACTTCTGGCGCTCCAGGTACTTCTTC
ATAACCTTTTCGCTGCGCTTCTTGGTCAGCACGTCGTTCTCGTCCTCCTT
CTGGGCGTGCTTGGGGTTACGCTTGCGTCCCAGGGGCAGCACGTAGTGAG
CCTCGTACCACTGGCGGAAGGGCGTGGCATCGATGACCACGATGCTGTTC
TTCACCAAGGTCTTGGTTCGCACCAGCTCGTTGTTGGAGGCGTTGTACAC
AACATCGGCGATACGGGTCTTGCGCGCCACTCCCTCGGAGGCCCAGGCGA
AGTTTCCGGTTTCCAGGCGCAGAGCACGGAGCTTGGTGTTTCCACCACGG
GTGCGCACCTTGTGCACGCGGCCGGAGCCAAGCTTGGTGTTGGCGGCGGG
GCGTCCCAACTCGAACTTGCGCTTCTTGCGGAGCGACTTGCGCTTGCCTC
CGGTGGCCCGGCGTTTGTGTGCACTATCGCGGCTAATACCCATGTCGACT
GATAACT
BS15351.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:19:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7808-PC | 627 | RpS8-RC | 1..627 | 643..17 | 3110 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:09:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS8-RG | 931 | CG7808-RG | 238..867 | 645..16 | 3135 | 99.8 | Minus |
RpS8-RF | 726 | CG7808-RF | 33..662 | 645..16 | 3135 | 99.8 | Minus |
RpS8-RE | 756 | CG7808-RE | 63..692 | 645..16 | 3135 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:08:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29862783..29863196 | 534..121 | 2055 | 99.8 | Minus |
3R | 32079331 | 3R | 29862198..29862305 | 640..533 | 540 | 100 | Minus |
3R | 32079331 | 3R | 29863414..29863519 | 121..16 | 530 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:09:03 has no hits.
BS15351.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:24:27 Download gff for
BS15351.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7808-PC | 1..627 | 17..643 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:00:27 Download gff for
BS15351.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7808-PC | 1..627 | 17..643 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:51:12 Download gff for
BS15351.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS8-RC | 22..671 | 5..655 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:30:09 Download gff for
BS15351.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS8-RE | 52..701 | 5..655 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:30:09 Download gff for
BS15351.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29862192..29862305 | 533..648 | 96 | -> | Minus |
3R | 29862785..29863196 | 121..532 | 99 | -> | Minus |
3R | 29863415..29863528 | 5..120 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:51:12 Download gff for
BS15351.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25687914..25688027 | 533..648 | 96 | -> | Minus |
arm_3R | 25688507..25688918 | 121..532 | 99 | -> | Minus |
arm_3R | 25689137..25689250 | 5..120 | 96 | | Minus |
BS15351.5prime Sequence
657 bp (657 high quality bases) assembled on 2006-10-24
> BS15351.5prime
GAAGTTATCATTCGAGATGGGTATTAGCCGCGATAGTGCACACAAACGCC
GGGCCACCGGAGGCAAGCGCAAGTCGCTCCGCACGAAGCGCAAGTTCGAG
TTGGGACGCCCCGCCGCCAACACCAAGCTTGGCTCCGGCCGCGTGCACAA
GGTGCGCACCCGTGGTGGAAACACCAAGCTCCGTGCTCTGCGCCTGGAAA
CCGGAAACTTCGCCTGGGCCTCCGAGGGAGTGGCGCGCAAGACCCGTATC
GCCGATGTTGTGTACAACGCCTCCAACAACGAGCTGGTGCGAACCAAGAC
CTTGGTGAAGAACAGCATCGTGGTCATCGATGCCACGCCCTTCCGCCAGT
GGTACGAGGCTCACTACGTGCTGCCCCTGGGACGCAAGCGTAACCCCAAG
CACGCCCAGAAGGAGGACGAGAACGACGTGCTGACCAAGAAGCGCAGCGA
AAAGGTTATGAAGAAGTACCTGGAGCGCCAGAAGTACGGCAAGGTCGAGC
AGGCCCTCGAGGATCAGTTCACCTCCGGCCGCATCTTGGCTTGCATTTCT
TCCCGCCCCGGACAGTGCGGTCGCTCCGACGGCTACATTTTGGAAGGCAA
GGAGTTGGAATTCTACCTTAAGAAGATCAAGTCTAAGAAATAAAAGCTTT
CTAGACC
BS15351.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:19:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7808-PC | 627 | RpS8-RC | 1..627 | 17..643 | 3085 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:28:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS8-RG | 931 | CG7808-RG | 240..867 | 17..644 | 3110 | 99.7 | Plus |
RpS8-RF | 726 | CG7808-RF | 35..662 | 17..644 | 3110 | 99.7 | Plus |
RpS8-RE | 756 | CG7808-RE | 65..692 | 17..644 | 3110 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:27:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29862783..29863196 | 126..539 | 2055 | 99.8 | Plus |
3R | 32079331 | 3R | 29863414..29863519 | 539..644 | 530 | 100 | Plus |
3R | 32079331 | 3R | 29862198..29862305 | 20..127 | 525 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:28:03 has no hits.
BS15351.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:24:28 Download gff for
BS15351.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7808-PC | 1..627 | 17..643 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:00:28 Download gff for
BS15351.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7808-PC | 1..627 | 17..643 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:40:20 Download gff for
BS15351.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS8-RC | 22..671 | 5..655 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:32:08 Download gff for
BS15351.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS8-RE | 52..701 | 5..655 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:32:08 Download gff for
BS15351.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29862198..29862305 | 20..127 | 99 | -> | Plus |
3R | 29862785..29863196 | 128..539 | 99 | -> | Plus |
3R | 29863415..29863528 | 540..655 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:40:20 Download gff for
BS15351.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25687920..25688027 | 20..127 | 99 | -> | Plus |
arm_3R | 25688507..25688918 | 128..539 | 99 | -> | Plus |
arm_3R | 25689137..25689250 | 540..655 | 96 | | Plus |
BS15351.complete Sequence
659 bp assembled on 2006-11-01
GenBank Submission: FJ637924
> BS15351.complete
GAAGTTATCAGTCGACATGGGTATTAGCCGCGATAGTGCACACAAACGCC
GGGCCACCGGAGGCAAGCGCAAGTCGCTCCGCAAGAAGCGCAAGTTCGAG
TTGGGACGCCCCGCCGCCAACACCAAGCTTGGCTCCGGCCGCGTGCACAA
GGTGCGCACCCGTGGTGGAAACACCAAGCTCCGTGCTCTGCGCCTGGAAA
CCGGAAACTTCGCCTGGGCCTCCGAGGGAGTGGCGCGCAAGACCCGTATC
GCCGATGTTGTGTACAACGCCTCCAACAACGAGCTGGTGCGAACCAAGAC
CTTGGTGAAGAACAGCATCGTGGTCATCGATGCCACGCCCTTCCGCCAGT
GGTACGAGGCTCACTACGTGCTGCCCCTGGGACGCAAGCGTAACCCCAAG
CACGCCCAGAAGGAGGACGAGAACGACGTGCTGACCAAGAAGCGCAGCGA
AAAGGTTATGAAGAAGTACCTGGAGCGCCAGAAGTACGGCAAGGTCGAGC
AGGCCCTCGAGGATCAGTTCACCTCCGGCCGCATCTTGGCTTGCATTTCT
TCCCGCCCCGGACAGTGCGGTCGCTCCGACGGCTACATTTTGGAAGGCAA
GGAGTTGGAATTCTACCTTAAGAAGATCAAGTCTAAGAAATAAAAGCTTT
CTAGACCAT
BS15351.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:00:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS8-RG | 627 | CG7808-PG | 1..627 | 17..643 | 3120 | 99.8 | Plus |
RpS8-RF | 627 | CG7808-PF | 1..627 | 17..643 | 3120 | 99.8 | Plus |
RpS8-RE | 627 | CG7808-PE | 1..627 | 17..643 | 3120 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:00:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS8-RG | 931 | CG7808-RG | 238..867 | 15..644 | 3135 | 99.8 | Plus |
RpS8-RF | 726 | CG7808-RF | 33..662 | 15..644 | 3135 | 99.8 | Plus |
RpS8-RE | 756 | CG7808-RE | 63..692 | 15..644 | 3135 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:00:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29862783..29863196 | 126..539 | 2055 | 99.8 | Plus |
3R | 32079331 | 3R | 29862198..29862305 | 20..127 | 540 | 100 | Plus |
3R | 32079331 | 3R | 29863414..29863519 | 539..644 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:00:51 has no hits.
BS15351.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:32:52 Download gff for
BS15351.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS8-RC | 1..627 | 17..643 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:05:23 Download gff for
BS15351.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS8-RC | 52..701 | 5..655 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:38:07 Download gff for
BS15351.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS8-RC | 35..652 | 17..634 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:32:52 Download gff for
BS15351.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS8-RC | 52..701 | 5..655 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:31:59 Download gff for
BS15351.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS8-RE | 65..682 | 17..634 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:31:59 Download gff for
BS15351.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29862197..29862305 | 17..127 | 98 | -> | Plus |
3R | 29862785..29863196 | 128..539 | 99 | -> | Plus |
3R | 29863415..29863509 | 540..634 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:38:07 Download gff for
BS15351.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25689137..25689231 | 540..634 | 100 | | Plus |
arm_3R | 25687919..25688027 | 17..127 | 98 | -> | Plus |
arm_3R | 25688507..25688918 | 128..539 | 99 | -> | Plus |
BS15351.pep Sequence
Translation from 16 to 642
> BS15351.pep
MGISRDSAHKRRATGGKRKSLRKKRKFELGRPAANTKLGSGRVHKVRTRG
GNTKLRALRLETGNFAWASEGVARKTRIADVVYNASNNELVRTKTLVKNS
IVVIDATPFRQWYEAHYVLPLGRKRNPKHAQKEDENDVLTKKRSEKVMKK
YLERQKYGKVEQALEDQFTSGRILACISSRPGQCGRSDGYILEGKELEFY
LKKIKSKK*
BS15351.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:30:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS8-PG | 208 | CG7808-PG | 1..208 | 1..208 | 1068 | 100 | Plus |
RpS8-PF | 208 | CG7808-PF | 1..208 | 1..208 | 1068 | 100 | Plus |
RpS8-PE | 208 | CG7808-PE | 1..208 | 1..208 | 1068 | 100 | Plus |
RpS8-PC | 208 | CG7808-PC | 1..208 | 1..208 | 1068 | 100 | Plus |