Clone BS15353 Report

Search the DGRC for BS15353

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:153
Well:53
Vector:pDNR-Dual
Associated Gene/Transcriptobsolete transcript model
Protein status:BS15353.pep: validated full length
Sequenced Size:16

Clone Sequence Records

BS15353.5prime Sequence

366 bp (366 high quality bases) assembled on 2006-10-24

> BS15353.5prime
GAAGTTATCCTTCGACATGTGTGCATTTGCAACGCATTTGCTGAAGTGCG
GGCGCCACGGTTTTCAAGTGGTTAATCCACCACCCGCTTCCGCTCTTCAC
TTAATACGCGCTCTTCCGGCTCTCTTAAAAGGACCAAGGCGAAGAGAATT
GGGGCGATGGTTTCTGCGCCGACAGCCTGCGCCTGAGTCCTTGGCCGCGG
CGGCAGAAGACCAAAGCAGCACAACCAGCAGCATCCGAGTGCGAAGCAAC
CAGCATCCAAAACCGAATCCAAAACTCCGGCTCAGTGTGAATTTGCGACT
CGAGAGCGACGGCGGCTCAAAGGAAACTTGGCTCGGAAAGTGTCTCGAGT
GAAAGCTTTCTAGACC

BS15353.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:19:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG31295-PA 336 CG31295-RA 1..336 17..352 1655 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:54:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG42613-RG 4961 CG42613-RG 51..386 17..352 1665 99.7 Plus
CG42613-RE 6672 CG42613-RE 51..386 17..352 1665 99.7 Plus
CG42613-RH 4927 CG42613-RH 51..386 17..352 1665 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:54:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18929246..18929565 17..336 1585 99.7 Plus
Blast to na_te.dros performed on 2015-02-13 05:54:35 has no hits.

BS15353.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:24:33 Download gff for BS15353.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31295-PA 1..336 17..352 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:00:34 Download gff for BS15353.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31295-PA 1..336 17..352 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:54:18 Download gff for BS15353.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42613-RH 51..386 17..352 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:56:42 Download gff for BS15353.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42613-RH 51..386 17..352 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:56:42 Download gff for BS15353.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 18929246..18929564 17..335 99 -> Plus
3R 18931144..18931160 336..352 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:54:18 Download gff for BS15353.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14754968..14755286 17..335 99 -> Plus
arm_3R 14756866..14756882 336..352 100   Plus

BS15353.3prime Sequence

366 bp (366 high quality bases) assembled on 2006-10-24

> BS15353.3prime
ATGGTCTAGAAAGCTTTCACTCGAGACACTTTCCGAGCCAAGTTTCCTTT
GAGCCGCCGTCGCTCTCGAGTCGCAAATTCACACTGAGCCGGAGTTTTGG
ATTCGGTTTTGGATGCTGGTTGCTTCGCACTCGGATGCTGCTGGTTGTGC
TGCTTTGGTCTTCTGCCGCCGCGGCCAAGGACTCAGGCGCAGGCTGTCGG
CGCAGAAACCATCGCCCCAATTCTCTTCGCCTTGGTCCTTTTAAGAGAGC
CGGAAGAGCGCGTATTAAGTGAAGAGCGGAAGCGCGTGGTGGATTAACCA
CTTGAAAACCGTGGCGCCCGCACTTCAGCAAATGCGTTGCAAATGCACAC
ATGTCGACTGATAACT

BS15353.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:19:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG31295-PA 336 CG31295-RA 1..336 352..17 1680 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:58:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG42613-RG 4961 CG42613-RG 51..386 352..17 1680 100 Minus
CG42613-RE 6672 CG42613-RE 51..386 352..17 1680 100 Minus
CG42613-RH 4927 CG42613-RH 51..386 352..17 1680 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:58:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18929246..18929565 352..33 1600 100 Minus
Blast to na_te.dros performed on 2015-02-13 12:58:03 has no hits.

BS15353.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:24:32 Download gff for BS15353.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31295-PA 1..336 17..352 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:00:32 Download gff for BS15353.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31295-PA 1..336 17..352 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:05:42 Download gff for BS15353.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42613-RH 51..386 17..352 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:19:57 Download gff for BS15353.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42613-RH 51..386 17..352 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:19:57 Download gff for BS15353.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 18929246..18929564 34..352 100 -> Minus
3R 18931144..18931160 17..33 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:05:42 Download gff for BS15353.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14754968..14755286 34..352 100 -> Minus
arm_3R 14756866..14756882 17..33 100   Minus

BS15353.complete Sequence

368 bp assembled on 2006-11-01

> BS15353.complete
GAAGTTATCAGTCGACATGTGTGCATTTGCAACGCATTTGCTGAAGTGCG
GGCGCCACGGTTTTCAAGTGGTTAATCCACCACGCGCTTCCGCTCTTCAC
TTAATACGCGCTCTTCCGGCTCTCTTAAAAGGACCAAGGCGAAGAGAATT
GGGGCGATGGTTTCTGCGCCGACAGCCTGCGCCTGAGTCCTTGGCCGCGG
CGGCAGAAGACCAAAGCAGCACAACCAGCAGCATCCGAGTGCGAAGCAAC
CAGCATCCAAAACCGAATCCAAAACTCCGGCTCAGTGTGAATTTGCGACT
CGAGAGCGACGGCGGCTCAAAGGAAACTTGGCTCGGAAAGTGTCTCGAGT
GAAAGCTTTCTAGACCAT

BS15353.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-26 15:45:23 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:45:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG42613-RG 4961 CG42613-RG 51..386 17..352 1680 100 Plus
CG42613-RE 6672 CG42613-RE 51..386 17..352 1680 100 Plus
CG42613-RH 4927 CG42613-RH 51..386 17..352 1680 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:45:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18929246..18929565 17..336 1600 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:45:22 has no hits.

BS15353.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 23:32:53 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:57:21 Download gff for BS15353.complete
Subject Subject Range Query Range Percent Splice Strand
CG42613-RH 51..385 17..351 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-21 23:32:53 has no hits.
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:19:34 Download gff for BS15353.complete
Subject Subject Range Query Range Percent Splice Strand
CG42613-RH 51..385 17..351 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:19:34 Download gff for BS15353.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18929246..18929564 17..335 100 -> Plus
3R 18931144..18931159 336..351 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:57:21 Download gff for BS15353.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14754968..14755286 17..335 100 -> Plus
arm_3R 14756866..14756881 336..351 100   Plus

BS15353.pep Sequence

Translation from 16 to 351

> BS15353.pep
MCAFATHLLKCGRHGFQVVNPPRASALHLIRALPALLKGPRRRELGRWFL
RRQPAPESLAAAAEDQSSTTSSIRVRSNQHPKPNPKLRLSVNLRLESDGG
SKETWLGKCLE*
Sequence BS15353.pep has no blast hits.