Clone Sequence Records
BS15353.5prime Sequence
366 bp (366 high quality bases) assembled on 2006-10-24
> BS15353.5prime
GAAGTTATCCTTCGACATGTGTGCATTTGCAACGCATTTGCTGAAGTGCG
GGCGCCACGGTTTTCAAGTGGTTAATCCACCACCCGCTTCCGCTCTTCAC
TTAATACGCGCTCTTCCGGCTCTCTTAAAAGGACCAAGGCGAAGAGAATT
GGGGCGATGGTTTCTGCGCCGACAGCCTGCGCCTGAGTCCTTGGCCGCGG
CGGCAGAAGACCAAAGCAGCACAACCAGCAGCATCCGAGTGCGAAGCAAC
CAGCATCCAAAACCGAATCCAAAACTCCGGCTCAGTGTGAATTTGCGACT
CGAGAGCGACGGCGGCTCAAAGGAAACTTGGCTCGGAAAGTGTCTCGAGT
GAAAGCTTTCTAGACC
BS15353.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:19:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31295-PA | 336 | CG31295-RA | 1..336 | 17..352 | 1655 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:54:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42613-RG | 4961 | CG42613-RG | 51..386 | 17..352 | 1665 | 99.7 | Plus |
CG42613-RE | 6672 | CG42613-RE | 51..386 | 17..352 | 1665 | 99.7 | Plus |
CG42613-RH | 4927 | CG42613-RH | 51..386 | 17..352 | 1665 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:54:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18929246..18929565 | 17..336 | 1585 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:54:35 has no hits.
BS15353.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:24:33 Download gff for
BS15353.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31295-PA | 1..336 | 17..352 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:00:34 Download gff for
BS15353.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31295-PA | 1..336 | 17..352 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:54:18 Download gff for
BS15353.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42613-RH | 51..386 | 17..352 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:56:42 Download gff for
BS15353.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42613-RH | 51..386 | 17..352 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:56:42 Download gff for
BS15353.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18929246..18929564 | 17..335 | 99 | -> | Plus |
3R | 18931144..18931160 | 336..352 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:54:18 Download gff for
BS15353.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14754968..14755286 | 17..335 | 99 | -> | Plus |
arm_3R | 14756866..14756882 | 336..352 | 100 | | Plus |
BS15353.3prime Sequence
366 bp (366 high quality bases) assembled on 2006-10-24
> BS15353.3prime
ATGGTCTAGAAAGCTTTCACTCGAGACACTTTCCGAGCCAAGTTTCCTTT
GAGCCGCCGTCGCTCTCGAGTCGCAAATTCACACTGAGCCGGAGTTTTGG
ATTCGGTTTTGGATGCTGGTTGCTTCGCACTCGGATGCTGCTGGTTGTGC
TGCTTTGGTCTTCTGCCGCCGCGGCCAAGGACTCAGGCGCAGGCTGTCGG
CGCAGAAACCATCGCCCCAATTCTCTTCGCCTTGGTCCTTTTAAGAGAGC
CGGAAGAGCGCGTATTAAGTGAAGAGCGGAAGCGCGTGGTGGATTAACCA
CTTGAAAACCGTGGCGCCCGCACTTCAGCAAATGCGTTGCAAATGCACAC
ATGTCGACTGATAACT
BS15353.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:19:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31295-PA | 336 | CG31295-RA | 1..336 | 352..17 | 1680 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:58:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42613-RG | 4961 | CG42613-RG | 51..386 | 352..17 | 1680 | 100 | Minus |
CG42613-RE | 6672 | CG42613-RE | 51..386 | 352..17 | 1680 | 100 | Minus |
CG42613-RH | 4927 | CG42613-RH | 51..386 | 352..17 | 1680 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:58:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18929246..18929565 | 352..33 | 1600 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 12:58:03 has no hits.
BS15353.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:24:32 Download gff for
BS15353.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31295-PA | 1..336 | 17..352 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:00:32 Download gff for
BS15353.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31295-PA | 1..336 | 17..352 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:05:42 Download gff for
BS15353.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42613-RH | 51..386 | 17..352 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:19:57 Download gff for
BS15353.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42613-RH | 51..386 | 17..352 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:19:57 Download gff for
BS15353.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18929246..18929564 | 34..352 | 100 | -> | Minus |
3R | 18931144..18931160 | 17..33 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:05:42 Download gff for
BS15353.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14754968..14755286 | 34..352 | 100 | -> | Minus |
arm_3R | 14756866..14756882 | 17..33 | 100 | | Minus |
BS15353.complete Sequence
368 bp assembled on 2006-11-01
> BS15353.complete
GAAGTTATCAGTCGACATGTGTGCATTTGCAACGCATTTGCTGAAGTGCG
GGCGCCACGGTTTTCAAGTGGTTAATCCACCACGCGCTTCCGCTCTTCAC
TTAATACGCGCTCTTCCGGCTCTCTTAAAAGGACCAAGGCGAAGAGAATT
GGGGCGATGGTTTCTGCGCCGACAGCCTGCGCCTGAGTCCTTGGCCGCGG
CGGCAGAAGACCAAAGCAGCACAACCAGCAGCATCCGAGTGCGAAGCAAC
CAGCATCCAAAACCGAATCCAAAACTCCGGCTCAGTGTGAATTTGCGACT
CGAGAGCGACGGCGGCTCAAAGGAAACTTGGCTCGGAAAGTGTCTCGAGT
GAAAGCTTTCTAGACCAT
BS15353.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-26 15:45:23 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:45:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42613-RG | 4961 | CG42613-RG | 51..386 | 17..352 | 1680 | 100 | Plus |
CG42613-RE | 6672 | CG42613-RE | 51..386 | 17..352 | 1680 | 100 | Plus |
CG42613-RH | 4927 | CG42613-RH | 51..386 | 17..352 | 1680 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:45:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18929246..18929565 | 17..336 | 1600 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:45:22 has no hits.
BS15353.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 23:32:53 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:57:21 Download gff for
BS15353.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42613-RH | 51..385 | 17..351 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-21 23:32:53 has no hits.
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:19:34 Download gff for
BS15353.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42613-RH | 51..385 | 17..351 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:19:34 Download gff for
BS15353.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18929246..18929564 | 17..335 | 100 | -> | Plus |
3R | 18931144..18931159 | 336..351 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:57:21 Download gff for
BS15353.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14754968..14755286 | 17..335 | 100 | -> | Plus |
arm_3R | 14756866..14756881 | 336..351 | 100 | | Plus |
BS15353.pep Sequence
Translation from 16 to 351
> BS15353.pep
MCAFATHLLKCGRHGFQVVNPPRASALHLIRALPALLKGPRRRELGRWFL
RRQPAPESLAAAAEDQSSTTSSIRVRSNQHPKPNPKLRLSVNLRLESDGG
SKETWLGKCLE*
Sequence BS15353.pep has no blast hits.