Clone Sequence Records
BS15355.3prime Sequence
621 bp (621 high quality bases) assembled on 2006-10-24
> BS15355.3prime
ATGGTCTAGAAAGCTTCTATTCGGTCTCGTAGAGCTCCTTCTTCCGCAGC
TTCGCTTGCAGAATGTCGTTCTCGTTGTAGGACAGGTGCAGCGGGGGTAT
CAGGGCGCAGGCCACCATTCGGTTCTCGGCATTCAGGAAGTTGAAGGTGG
CACATGCCTGCTCCGTGCGCAGGATCTCTACGTTTATCTTGTACTTCTTC
ATGAACTCGATGATCCTCTTGGAAAGAGCTGGGGGCGGTGCTTGGTCGCC
AATGCCAATGATAAGCACGTCGATCTTTGGCTCCAGGGTGGGGAAGAGAC
TGAGGCTGTCCTCGTTGATGTCCTCAAAGCTGTTGACGTTCCAGGACAGA
ACCGATCTGGGAAACACGGAGATGGGGCCAATGAGGACCATGTCGTTGTT
GAGCCGGAAGCCGTACTGGCTGTAGCCGGTGACCATAAGGCCCAGATCCG
TTTCGGTGTTGAAGATGGTGACTTTGGTCTTCCCGTCGTGGTCGTAGGCC
TTGCTGAAGTTGGCCGGAATAGCGTGAAGTGGGCGACAGGCGGTGATGCG
CGGTAGCAGAAGGTTGCGACCTTGCCGGCCCACCGTTCGCAGGGTGCGCG
CAATCATGTCGACTGATAACT
BS15355.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:19:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5569-PA | 591 | CG5569-RA | 1..591 | 607..17 | 2955 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:28:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5569-RA | 774 | CG5569-RA | 109..700 | 608..17 | 2960 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:28:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23865522..23865773 | 608..357 | 1260 | 100 | Minus |
2R | 25286936 | 2R | 23866184..23866386 | 359..157 | 1015 | 100 | Minus |
2R | 25286936 | 2R | 23866436..23866580 | 161..17 | 725 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:28:48 has no hits.
BS15355.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:24:37 Download gff for
BS15355.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5569-PA | 1..591 | 17..607 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:00:38 Download gff for
BS15355.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5569-PA | 1..591 | 17..607 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:22:21 Download gff for
BS15355.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5569-RA | 105..704 | 11..614 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:07:38 Download gff for
BS15355.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5569-RA | 105..704 | 11..614 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:07:38 Download gff for
BS15355.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23865518..23865773 | 357..614 | 98 | -> | Minus |
2R | 23866187..23866385 | 158..356 | 100 | -> | Minus |
2R | 23866440..23866584 | 11..157 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:22:21 Download gff for
BS15355.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19753041..19753296 | 357..614 | 98 | -> | Minus |
arm_2R | 19753710..19753908 | 158..356 | 100 | -> | Minus |
arm_2R | 19753963..19754107 | 11..157 | 97 | | Minus |
BS15355.5prime Sequence
621 bp (621 high quality bases) assembled on 2006-10-24
> BS15355.5prime
GAAGTTATCATTCGACATGATTGCGCGCACCCTGCGAACGGTGGGCCGGC
AAGGTCGCAACCTTCTGCTACCGCGCATCACCGCCTGTCGCCCACTTCAC
GCTATTCCGGCCAACTTCAGCAAGGCCTACGACCACGACGGGAAGACCAA
AGTCACCATCTTCAACACCGAAACGGATCTGGGCCTTATGGTCACCGGCT
ACAGCCAGTACGGCTTCCGGCTCAACAACGACATGGTCCTCATTGGCCCC
ATCTCCGTGTTTCCCAGATCGGTTCTGTCCTGGAACGTCAACAGCTTTGA
GGACATCAACGAGGACAGCCTCAGTCTCTTCCCCACCCTGGAGCCAAAGA
TCGACGTGCTTATCATTGGCATTGGCGACCAAGCACCGCCCCCAGCTCTT
TCCAAGAGGATCATCGAGTTCATGAAGAAGTACAAGATAAACGTAGAGAT
CCTGCGCACGGAGCAGGCATGTGCCACCTTCAACTTCCTGAATGCCGAGA
ACCGAATGGTGGCCTGCGCCCTGATACCCCCGCTGCACCTGTCCTACAAC
GAGAACGACATTCTGCAAGCGAAGCTGCGGAAGAAGGAGCTCTACGAGAC
CGAATAGAAGCTTTCTAGACC
BS15355.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:19:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5569-PA | 591 | CG5569-RA | 1..591 | 17..607 | 2955 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:08:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5569-RA | 774 | CG5569-RA | 109..700 | 16..607 | 2960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:08:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23865522..23865773 | 16..267 | 1260 | 100 | Plus |
2R | 25286936 | 2R | 23866184..23866386 | 265..467 | 1015 | 100 | Plus |
2R | 25286936 | 2R | 23866436..23866580 | 463..607 | 725 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 07:08:09 has no hits.
BS15355.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:24:38 Download gff for
BS15355.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5569-PA | 1..591 | 17..607 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:00:39 Download gff for
BS15355.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5569-PA | 1..591 | 17..607 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:51:00 Download gff for
BS15355.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5569-RA | 101..704 | 9..613 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:27:57 Download gff for
BS15355.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5569-RA | 101..704 | 9..613 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:27:57 Download gff for
BS15355.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23865514..23865773 | 9..267 | 98 | -> | Plus |
2R | 23866187..23866385 | 268..466 | 100 | -> | Plus |
2R | 23866440..23866584 | 467..613 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:51:00 Download gff for
BS15355.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19753037..19753296 | 9..267 | 98 | -> | Plus |
arm_2R | 19753710..19753908 | 268..466 | 100 | -> | Plus |
arm_2R | 19753963..19754107 | 467..613 | 97 | | Plus |
BS15355.complete Sequence
623 bp assembled on 2006-11-01
GenBank Submission: FJ637925
> BS15355.complete
GAAGTTATCAGTCGACATGATTGCGCGCACCCTGCGAACGGTGGGCCGGC
AAGGTCGCAACCTTCTGCTACCGCGCATCACCGCCTGTCGCCCACTTCAC
GCTATTCCGGCCAACTTCAGCAAGGCCTACGACCACGACGGGAAGACCAA
AGTCACCATCTTCAACACCGAAACGGATCTGGGCCTTATGGTCACCGGCT
ACAGCCAGTACGGCTTCCGGCTCAACAACGACATGGTCCTCATTGGCCCC
ATCTCCGTGTTTCCCAGATCGGTTCTGTCCTGGAACGTCAACAGCTTTGA
GGACATCAACGAGGACAGCCTCAGTCTCTTCCCCACCCTGGAGCCAAAGA
TCGACGTGCTTATCATTGGCATTGGCGACCAAGCACCGCCCCCAGCTCTT
TCCAAGAGGATCATCGAGTTCATGAAGAAGTACAAGATAAACGTAGAGAT
CCTGCGCACGGAGCAGGCATGTGCCACCTTCAACTTCCTGAATGCCGAGA
ACCGAATGGTGGCCTGCGCCCTGATACCCCCGCTGCACCTGTCCTACAAC
GAGAACGACATTCTGCAAGCGAAGCTGCGGAAGAAGGAGCTCTACGAGAC
CGAATAGAAGCTTTCTAGACCAT
BS15355.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:36:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5569-RA | 591 | CG5569-PA | 1..591 | 17..607 | 2955 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:36:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5569-RA | 774 | CG5569-RA | 109..700 | 16..607 | 2960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:36:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23865522..23865773 | 16..267 | 1260 | 100 | Plus |
2R | 25286936 | 2R | 23866184..23866386 | 265..467 | 1015 | 100 | Plus |
2R | 25286936 | 2R | 23866436..23866580 | 463..607 | 725 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:36:23 has no hits.
BS15355.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:46:34 Download gff for
BS15355.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5569-RA | 1..591 | 17..607 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:34:17 Download gff for
BS15355.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5569-RA | 98..697 | 10..613 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:40:19 Download gff for
BS15355.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5569-RA | 110..700 | 17..607 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:46:34 Download gff for
BS15355.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5569-RA | 98..697 | 10..613 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:26:11 Download gff for
BS15355.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5569-RA | 110..700 | 17..607 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:26:11 Download gff for
BS15355.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23865523..23865773 | 17..267 | 100 | -> | Plus |
2R | 23866187..23866385 | 268..466 | 100 | -> | Plus |
2R | 23866440..23866580 | 467..607 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:40:19 Download gff for
BS15355.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19753046..19753296 | 17..267 | 100 | -> | Plus |
arm_2R | 19753710..19753908 | 268..466 | 100 | -> | Plus |
arm_2R | 19753963..19754103 | 467..607 | 100 | | Plus |
BS15355.pep Sequence
Translation from 16 to 606
> BS15355.pep
MIARTLRTVGRQGRNLLLPRITACRPLHAIPANFSKAYDHDGKTKVTIFN
TETDLGLMVTGYSQYGFRLNNDMVLIGPISVFPRSVLSWNVNSFEDINED
SLSLFPTLEPKIDVLIIGIGDQAPPPALSKRIIEFMKKYKINVEILRTEQ
ACATFNFLNAENRMVACALIPPLHLSYNENDILQAKLRKKELYETE*
BS15355.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:48:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5569-PA | 196 | CG5569-PA | 1..196 | 1..196 | 1011 | 100 | Plus |