Clone BS15355 Report

Search the DGRC for BS15355

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:153
Well:55
Vector:pDNR-Dual
Associated Gene/TranscriptCG5569-RA
Protein status:BS15355.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15355.3prime Sequence

621 bp (621 high quality bases) assembled on 2006-10-24

> BS15355.3prime
ATGGTCTAGAAAGCTTCTATTCGGTCTCGTAGAGCTCCTTCTTCCGCAGC
TTCGCTTGCAGAATGTCGTTCTCGTTGTAGGACAGGTGCAGCGGGGGTAT
CAGGGCGCAGGCCACCATTCGGTTCTCGGCATTCAGGAAGTTGAAGGTGG
CACATGCCTGCTCCGTGCGCAGGATCTCTACGTTTATCTTGTACTTCTTC
ATGAACTCGATGATCCTCTTGGAAAGAGCTGGGGGCGGTGCTTGGTCGCC
AATGCCAATGATAAGCACGTCGATCTTTGGCTCCAGGGTGGGGAAGAGAC
TGAGGCTGTCCTCGTTGATGTCCTCAAAGCTGTTGACGTTCCAGGACAGA
ACCGATCTGGGAAACACGGAGATGGGGCCAATGAGGACCATGTCGTTGTT
GAGCCGGAAGCCGTACTGGCTGTAGCCGGTGACCATAAGGCCCAGATCCG
TTTCGGTGTTGAAGATGGTGACTTTGGTCTTCCCGTCGTGGTCGTAGGCC
TTGCTGAAGTTGGCCGGAATAGCGTGAAGTGGGCGACAGGCGGTGATGCG
CGGTAGCAGAAGGTTGCGACCTTGCCGGCCCACCGTTCGCAGGGTGCGCG
CAATCATGTCGACTGATAACT

BS15355.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:19:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG5569-PA 591 CG5569-RA 1..591 607..17 2955 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:28:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG5569-RA 774 CG5569-RA 109..700 608..17 2960 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:28:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23865522..23865773 608..357 1260 100 Minus
2R 25286936 2R 23866184..23866386 359..157 1015 100 Minus
2R 25286936 2R 23866436..23866580 161..17 725 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:28:48 has no hits.

BS15355.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:24:37 Download gff for BS15355.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5569-PA 1..591 17..607 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:00:38 Download gff for BS15355.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5569-PA 1..591 17..607 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:22:21 Download gff for BS15355.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5569-RA 105..704 11..614 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:07:38 Download gff for BS15355.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5569-RA 105..704 11..614 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:07:38 Download gff for BS15355.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23865518..23865773 357..614 98 -> Minus
2R 23866187..23866385 158..356 100 -> Minus
2R 23866440..23866584 11..157 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:22:21 Download gff for BS15355.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19753041..19753296 357..614 98 -> Minus
arm_2R 19753710..19753908 158..356 100 -> Minus
arm_2R 19753963..19754107 11..157 97   Minus

BS15355.5prime Sequence

621 bp (621 high quality bases) assembled on 2006-10-24

> BS15355.5prime
GAAGTTATCATTCGACATGATTGCGCGCACCCTGCGAACGGTGGGCCGGC
AAGGTCGCAACCTTCTGCTACCGCGCATCACCGCCTGTCGCCCACTTCAC
GCTATTCCGGCCAACTTCAGCAAGGCCTACGACCACGACGGGAAGACCAA
AGTCACCATCTTCAACACCGAAACGGATCTGGGCCTTATGGTCACCGGCT
ACAGCCAGTACGGCTTCCGGCTCAACAACGACATGGTCCTCATTGGCCCC
ATCTCCGTGTTTCCCAGATCGGTTCTGTCCTGGAACGTCAACAGCTTTGA
GGACATCAACGAGGACAGCCTCAGTCTCTTCCCCACCCTGGAGCCAAAGA
TCGACGTGCTTATCATTGGCATTGGCGACCAAGCACCGCCCCCAGCTCTT
TCCAAGAGGATCATCGAGTTCATGAAGAAGTACAAGATAAACGTAGAGAT
CCTGCGCACGGAGCAGGCATGTGCCACCTTCAACTTCCTGAATGCCGAGA
ACCGAATGGTGGCCTGCGCCCTGATACCCCCGCTGCACCTGTCCTACAAC
GAGAACGACATTCTGCAAGCGAAGCTGCGGAAGAAGGAGCTCTACGAGAC
CGAATAGAAGCTTTCTAGACC

BS15355.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:19:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG5569-PA 591 CG5569-RA 1..591 17..607 2955 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:08:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG5569-RA 774 CG5569-RA 109..700 16..607 2960 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:08:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23865522..23865773 16..267 1260 100 Plus
2R 25286936 2R 23866184..23866386 265..467 1015 100 Plus
2R 25286936 2R 23866436..23866580 463..607 725 100 Plus
Blast to na_te.dros performed on 2015-02-13 07:08:09 has no hits.

BS15355.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:24:38 Download gff for BS15355.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5569-PA 1..591 17..607 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:00:39 Download gff for BS15355.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5569-PA 1..591 17..607 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:51:00 Download gff for BS15355.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5569-RA 101..704 9..613 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:27:57 Download gff for BS15355.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5569-RA 101..704 9..613 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:27:57 Download gff for BS15355.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23865514..23865773 9..267 98 -> Plus
2R 23866187..23866385 268..466 100 -> Plus
2R 23866440..23866584 467..613 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:51:00 Download gff for BS15355.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19753037..19753296 9..267 98 -> Plus
arm_2R 19753710..19753908 268..466 100 -> Plus
arm_2R 19753963..19754107 467..613 97   Plus

BS15355.complete Sequence

623 bp assembled on 2006-11-01

GenBank Submission: FJ637925

> BS15355.complete
GAAGTTATCAGTCGACATGATTGCGCGCACCCTGCGAACGGTGGGCCGGC
AAGGTCGCAACCTTCTGCTACCGCGCATCACCGCCTGTCGCCCACTTCAC
GCTATTCCGGCCAACTTCAGCAAGGCCTACGACCACGACGGGAAGACCAA
AGTCACCATCTTCAACACCGAAACGGATCTGGGCCTTATGGTCACCGGCT
ACAGCCAGTACGGCTTCCGGCTCAACAACGACATGGTCCTCATTGGCCCC
ATCTCCGTGTTTCCCAGATCGGTTCTGTCCTGGAACGTCAACAGCTTTGA
GGACATCAACGAGGACAGCCTCAGTCTCTTCCCCACCCTGGAGCCAAAGA
TCGACGTGCTTATCATTGGCATTGGCGACCAAGCACCGCCCCCAGCTCTT
TCCAAGAGGATCATCGAGTTCATGAAGAAGTACAAGATAAACGTAGAGAT
CCTGCGCACGGAGCAGGCATGTGCCACCTTCAACTTCCTGAATGCCGAGA
ACCGAATGGTGGCCTGCGCCCTGATACCCCCGCTGCACCTGTCCTACAAC
GAGAACGACATTCTGCAAGCGAAGCTGCGGAAGAAGGAGCTCTACGAGAC
CGAATAGAAGCTTTCTAGACCAT

BS15355.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:36:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG5569-RA 591 CG5569-PA 1..591 17..607 2955 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:36:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG5569-RA 774 CG5569-RA 109..700 16..607 2960 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:36:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23865522..23865773 16..267 1260 100 Plus
2R 25286936 2R 23866184..23866386 265..467 1015 100 Plus
2R 25286936 2R 23866436..23866580 463..607 725 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:36:23 has no hits.

BS15355.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:46:34 Download gff for BS15355.complete
Subject Subject Range Query Range Percent Splice Strand
CG5569-RA 1..591 17..607 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:34:17 Download gff for BS15355.complete
Subject Subject Range Query Range Percent Splice Strand
CG5569-RA 98..697 10..613 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:40:19 Download gff for BS15355.complete
Subject Subject Range Query Range Percent Splice Strand
CG5569-RA 110..700 17..607 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:46:34 Download gff for BS15355.complete
Subject Subject Range Query Range Percent Splice Strand
CG5569-RA 98..697 10..613 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:26:11 Download gff for BS15355.complete
Subject Subject Range Query Range Percent Splice Strand
CG5569-RA 110..700 17..607 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:26:11 Download gff for BS15355.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23865523..23865773 17..267 100 -> Plus
2R 23866187..23866385 268..466 100 -> Plus
2R 23866440..23866580 467..607 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:40:19 Download gff for BS15355.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19753046..19753296 17..267 100 -> Plus
arm_2R 19753710..19753908 268..466 100 -> Plus
arm_2R 19753963..19754103 467..607 100   Plus

BS15355.pep Sequence

Translation from 16 to 606

> BS15355.pep
MIARTLRTVGRQGRNLLLPRITACRPLHAIPANFSKAYDHDGKTKVTIFN
TETDLGLMVTGYSQYGFRLNNDMVLIGPISVFPRSVLSWNVNSFEDINED
SLSLFPTLEPKIDVLIIGIGDQAPPPALSKRIIEFMKKYKINVEILRTEQ
ACATFNFLNAENRMVACALIPPLHLSYNENDILQAKLRKKELYETE*

BS15355.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:48:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG5569-PA 196 CG5569-PA 1..196 1..196 1011 100 Plus