Clone Sequence Records
BS15360.3prime Sequence
740 bp (698 high quality bases) assembled on 2006-10-24
> BS15360.3prime
ATGGTCTAGAAAGCTTTCAGGCCTTGGGTATATTTGGTGGCAAAGTGGCG
AAGGTGAGGAAGCCCGTGTGACCGGGCAGGGTTTGGGGATTACTGGAGGT
CAGGTACTTCTTCACCTCCTTTGGCGCCTTGCTCTCCAAGGCATTTGTTG
CCGCCGTCGTCTCATCGGTTTTGGGCAATTTAAGGAACTCAAGATCGATG
ACGGGCAGCGTGCGCGTCTTCACCACGTTCTCCTGCTGCAGCACCTCCAA
GGAAACAATCTCGTTGAAGCCCAGCTTGGTTAGCTCTTGGATGCAGCGCT
GCGACTGCTCAATGCAGGGCGAAAACGAACAGAAACGACCTCCGGACAGC
TTCAACGCCTTGAAGGCGTGCGGCACAGCGAGATCGGGCGCGGGCAGATC
CAAGAAGACCGCATCGGCCTTTCCGTCCAGTTCCGCACCAAAGCCCAGAT
TGCAAACGTCCCGGTGATAGACGGTGACGAAGTCAGCGATACCATGTCGC
CGGAACTCGTCGCGTGCCTGATCCGCTCGAGCTTCGTGGAAATCGAAGGT
GTGCAGGTGGCCAGTGGGTTTCAGTGCTCTTAGAAAGTAATGCGATAGAG
ACCCCGATCCCGTGCCCGACTCAACCACCACGGCACCGGGTCGGACCTCC
AGCTGGTGGATAATCATACTAATATCCGGCGTGTAAATAATCTGTGTGCG
GGGGGGCAGTGTTTGTGTCCAGAGTTCCGGCGTCGGCTGA
BS15360.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:19:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14544-PA | 954 | CG14544-RA | 231..954 | 740..17 | 3595 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:55:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14544-RB | 1031 | CG14544-RB | 303..1026 | 740..17 | 3605 | 99.9 | Minus |
CG14544-RA | 1069 | CG14544-RA | 315..1038 | 740..17 | 3605 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:55:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26059864..26060262 | 740..342 | 1980 | 99.7 | Minus |
3R | 32079331 | 3R | 26060936..26061262 | 343..17 | 1635 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:55:29 has no hits.
BS15360.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:24:48 Download gff for
BS15360.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14544-PA | 232..954 | 17..739 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:00:52 Download gff for
BS15360.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14544-PA | 232..954 | 17..739 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:54:31 Download gff for
BS15360.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14544-RA | 316..1038 | 17..739 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:58:15 Download gff for
BS15360.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14544-RA | 316..1038 | 17..739 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:58:15 Download gff for
BS15360.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26059865..26060261 | 343..739 | 99 | -> | Minus |
3R | 26060937..26061258 | 21..342 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:54:31 Download gff for
BS15360.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21886659..21886980 | 21..342 | 100 | <- | Minus |
arm_3R | 21885587..21885983 | 343..739 | 99 | -> | Minus |
BS15360.5prime Sequence
823 bp (682 high quality bases) assembled on 2006-10-24
> BS15360.5prime
GAAGTTACCTTTCGAGGTGAGTTTTCTGAAACCCAAGACCCACATAGAAA
AGGGCGATGTGGTCATCCTTTATTTGAGTGTCACTTCCGTGCATGCCATC
GAAGCGGTGCCCGAAATAGTGAACAAAAAGGGCGAAACAATACCGCATAT
TTTTCAGACCAATTATGGATCGCTAAAAGTTGAAAATATCATCGGCGTGG
AGTATGGTAGTAAAGTGGAGCTCTCCAAGGGCTGGGCCCATGTCCTTCAG
CCGACGCCGGAACTCTGGACACAAACACTGCCCCACCGCACACAGATTAT
TTACACGCCGGATATTAGTATGATTATCCACCAGCTGGAGGTCCGACCCG
GTGCCGTGGTGGTTGAGTCGGGCACGGGATCGGGGTCTCTATCGCATTAC
TTTCTAAGAGCACTGAAACCCACTGGCCACCTGCACACCTTCGATTTCCA
CGAAGCTCGAGCGGATCAGGCACGCGACGAGTTCCGGCGACATGGTATCG
CTGACTTCGTCACCGTCTATCACCGGGACGTTTGCAATCTGGGCTTTGGT
GCGGAACTGGACGGAAAGGCCGATGCGGTCTTCTTGGATCTGCCCGCGCC
CGATCTCGCTGTGCCGCACGCCTTCAAGGCGTTGAAGCTGTCCGGAGGTC
GTTTCTGTTCGTTTTCGCCCTGCATTGAGCAGTCGCAGCGCTGCATCCAA
GAGCTAACCAAGCTGGGCTTCAACGAGATTGTTTCCTTGGAGGTGCTGCA
GCAGGAGAACGTGGTGAAGACGCGCACGCTGCCCGTCATCGATCTTGAGT
TCCTTAATTGCCCAAAACCGATG
BS15360.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:19:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14544-PA | 954 | CG14544-RA | 2..791 | 18..807 | 3900 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:08:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14544-RB | 1031 | CG14544-RB | 74..880 | 18..823 | 3980 | 99.6 | Plus |
CG14544-RA | 1069 | CG14544-RA | 86..892 | 18..823 | 3980 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:08:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26059803..26060262 | 186..645 | 2300 | 100 | Plus |
3R | 32079331 | 3R | 26060936..26061116 | 644..823 | 855 | 99.4 | Plus |
3R | 32079331 | 3R | 26059581..26059748 | 18..185 | 810 | 98.8 | Plus |
Blast to na_te.dros performed on 2015-02-13 07:08:34 has no hits.
BS15360.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:24:49 Download gff for
BS15360.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14544-PA | 2..808 | 18..823 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:00:53 Download gff for
BS15360.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14544-PA | 2..808 | 18..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:51:05 Download gff for
BS15360.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14544-RA | 86..892 | 18..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:29:06 Download gff for
BS15360.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14544-RA | 86..892 | 18..823 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:29:06 Download gff for
BS15360.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26059581..26059748 | 18..185 | 98 | -> | Plus |
3R | 26059803..26060261 | 186..644 | 100 | -> | Plus |
3R | 26060937..26061116 | 645..823 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:51:05 Download gff for
BS15360.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21885303..21885470 | 18..185 | 98 | -> | Plus |
arm_3R | 21885525..21885983 | 186..644 | 100 | -> | Plus |
arm_3R | 21886659..21886838 | 645..823 | 99 | | Plus |
BS15360.complete Sequence
986 bp assembled on 2009-08-24
GenBank Submission: KX806512
> BS15360.complete
GAAGTTATCAGTCGACATGAGTTTTCTGAAACCCAAGACCCACATAGAAA
AGGGCGATGTGGTCATCCTTTATTTGAGTGTCAGTTCCATGCATGCCATC
GAAGCGGTGCCCGAAATAGTGAACAAAAAGGGCGAAACAATACCGCATAT
TTTTCAGACCAATTATGGATCGCTAAAAGTTGAAAATATCATCGGCGTGG
AGTATGGTAGTAAAGTGGAGCTCTCCAAGGGCTGGGCCCATGTCCTTCAG
CCGACGCCGGAACTCTGGACACAAACACTGCCCCACCGCACACAGATTAT
TTACACGCCGGATATTAGTATGATTATCCACCAGCTGGAGGTCCGACCCG
GTGCCGTGGTGGTTGAGTCGGGCACGGGATCGGGGTCTCTATCGCATTAC
TTTCTAAGAGCACTGAAACCCACTGGCCACCTGCACACCTTCGATTTCCA
CGAAGCTCGAGCGGATCAGGCACGCGACGAGTTCCGGCGACATGGTATCG
CTGACTTCGTCACCGTCTATCACCGGGACGTTTGCAATCTGGGCTTTGGT
GCGGAACTGGACGGAAAGGCCGATGCGGTCTTCTTGGATCTGCCCGCGCC
CGATCTCGCTGTGCCGCACGCCTTCAAGGCGTTGAAGCTGTCCGGAGGTC
GTTTCTGTTCGTTTTCGCCCTGCATTGAGCAGTCGCAGCGCTGCATCCAA
GAGCTAACCAAGCTGGGCTTCAACGAGATTGTTTCCTTGGAGGTGCTGCA
GCAGGAGAACGTGGTGAAGACGCGCACGCTGCCCGTCATCGATCTTGAGT
TCCTTAAATTGCCCAAAACCGATGAGACGACGGCGGCAACAAATGCCTTG
GAGAGCAAGGCGCCAAAGGAGGTGAAGAAGTACCTGACCTCCAGTAATCC
CCAAACCCTGCCCGGTCACACGGGCTTCCTCACCTTCGCCACTTTGCCAC
CAAATATACCCAAGGCCTGAAAGCTTTCTAGACCAT
BS15360.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:36:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14544-RB | 954 | CG14544-PB | 1..954 | 17..970 | 4770 | 100 | Plus |
CG14544-RA | 954 | CG14544-PA | 1..954 | 17..970 | 4770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:36:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14544-RB | 1031 | CG14544-RB | 71..1026 | 15..970 | 4780 | 100 | Plus |
CG14544-RA | 1069 | CG14544-RA | 83..1038 | 15..970 | 4780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:36:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26059803..26060262 | 186..645 | 2300 | 100 | Plus |
3R | 32079331 | 3R | 26060936..26061262 | 644..970 | 1635 | 100 | Plus |
3R | 32079331 | 3R | 26059578..26059748 | 15..185 | 855 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:36:37 has no hits.
BS15360.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:41 Download gff for
BS15360.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14544-RA | 73..1025 | 17..969 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:52:36 Download gff for
BS15360.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14544-RA | 85..1037 | 17..969 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:52:39 Download gff for
BS15360.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14544-RA | 85..1037 | 17..969 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:52:39 Download gff for
BS15360.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26059580..26059748 | 17..185 | 100 | -> | Plus |
3R | 26059803..26060261 | 186..644 | 100 | -> | Plus |
3R | 26060937..26061261 | 645..969 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:52:36 Download gff for
BS15360.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21885302..21885470 | 17..185 | 100 | -> | Plus |
arm_3R | 21885525..21885983 | 186..644 | 100 | -> | Plus |
arm_3R | 21886659..21886983 | 645..969 | 100 | | Plus |
BS15360.pep Sequence
Translation from 16 to 969
> BS15360.pep
MSFLKPKTHIEKGDVVILYLSVSSMHAIEAVPEIVNKKGETIPHIFQTNY
GSLKVENIIGVEYGSKVELSKGWAHVLQPTPELWTQTLPHRTQIIYTPDI
SMIIHQLEVRPGAVVVESGTGSGSLSHYFLRALKPTGHLHTFDFHEARAD
QARDEFRRHGIADFVTVYHRDVCNLGFGAELDGKADAVFLDLPAPDLAVP
HAFKALKLSGGRFCSFSPCIEQSQRCIQELTKLGFNEIVSLEVLQQENVV
KTRTLPVIDLEFLKLPKTDETTAATNALESKAPKEVKKYLTSSNPQTLPG
HTGFLTFATLPPNIPKA*
BS15360.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:35:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14544-PB | 317 | CG14544-PB | 1..317 | 1..317 | 1651 | 100 | Plus |
CG14544-PA | 317 | CG14544-PA | 1..317 | 1..317 | 1651 | 100 | Plus |