Clone Sequence Records
BS15375.3prime Sequence
763 bp (664 high quality bases) assembled on 2006-10-24
> BS15375.3prime
ATGGTCTAGAAAGCTTTTATTTTAAATTACAATCGGATGCTAAACGTGCT
TTAGATTCTTTGGGAATGTTGATTGTGCTACTCGTGTAATGGCTGTGAAC
GACATCCTTTGGCGTGGACACATACTGATGGGACATGGCATTGTCCGTGA
TTATTTTGCGCACCACTTCCTCAACCGTTGGCGCCGTCGCCTCCAAGTCC
GCTTGGCTCTTGTTGTCTAGGTTGACGAGAGTCAGTGGCTGATCGGAATG
CATTACGGAATCCATGCCGCCCTTGGCATTGCAGATGTCCAGTACCCAGG
ACACCACAAAGAAGCAGGCGGCGTTCATCGGAAAAGCCCGGATCAAGGTG
GAGTTTAGACCGCGAAAGAAGTACTGCGGTCCCTCGTTCCTAAAGCCCTT
CATGGCACAGTCGATGAAGCCATTGTATTTGGCATTCGCGCCCAGGGCAT
CGGCCTGCATGTGGGTCTTCACCACGTCGATGGGGTAGCACGCCAACCAG
GACGACATGCCAGCACATCCGCCGGCCATTAGAGTGTACGCAACGCCGGG
TGTCTCCACTTGACGCATAAGGTACTCGAAGGACACAAAGTAGCTGGCAA
AGCCTGGAATATCCCTTAGAATGGTGGCTGTTAATCCCTTGAAGGCACCT
CTGATACCCTCCGTTTTTACTATGTACTTGAGGCAGTGAATGGGTCCAGT
GAACTTGATGCCGCTATCAACCTGCGTGGACAATTGGAGTCCCGTTTTGG
CCAATTCCATGGG
BS15375.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:19:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4995-PA | 1200 | CG4995-RA | 454..1200 | 763..17 | 3685 | 99.7 | Minus |
CG4995-PC | 1083 | CG4995-RC | 337..1083 | 763..17 | 3685 | 99.7 | Minus |
CG4995-PB | 1200 | CG4995-RB | 454..1200 | 763..17 | 3685 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:41:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4995-RD | 1246 | CG4995-RD | 475..1222 | 763..16 | 3710 | 99.7 | Minus |
CG4995-RB | 1431 | CG4995-RB | 660..1407 | 763..16 | 3710 | 99.7 | Minus |
CG4995-RC | 1205 | CG4995-RC | 434..1181 | 763..16 | 3710 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:41:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10324375..10324966 | 607..16 | 2960 | 100 | Minus |
2L | 23513712 | 2L | 10324150..10324310 | 763..603 | 775 | 98.8 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:41:49 has no hits.
BS15375.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:25:13 Download gff for
BS15375.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4995-PC | 337..1083 | 17..763 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:01:25 Download gff for
BS15375.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4995-PB | 454..1200 | 17..763 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:39:04 Download gff for
BS15375.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4995-RC | 434..1181 | 16..763 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:17:44 Download gff for
BS15375.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4995-RC | 434..1181 | 16..763 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:17:44 Download gff for
BS15375.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10324150..10324309 | 604..763 | 98 | -> | Minus |
2L | 10324379..10324966 | 16..603 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:39:04 Download gff for
BS15375.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10324150..10324309 | 604..763 | 98 | -> | Minus |
arm_2L | 10324379..10324966 | 16..603 | 100 | | Minus |
BS15375.5prime Sequence
850 bp (739 high quality bases) assembled on 2006-10-24
> BS15375.5prime
GAAGTTATCAGTCGACATGGTTGTGGATTTCGTAGCCGGACTCCTGGGCG
GAGCTGCTGGTGTTCTTGTCGGCCATCCCTTCGATACCGTGAAGGTCCAC
CTGCAAACCGATGATCCTCGCAATCCCAAGTACAAAGGCACATTCCACTG
CTTCCGGACGATAGTGCAAAGAGACAAATTCATAGGATTATATCGTGGTA
TCAGCAGTCCCATGGGAGGAATCGGATTGGTGAACGCCATCGTTTTCGGG
GTCTACGGAAACGTGCAACGCTTGTCCAATGACCCCAATTCGCTGACGTC
ACACTTCTTCGCTGGCTCCATCGCTGGTGTCGCCCAGGGTTTCGTGTGTG
CGCCCATGGAGTTGGCCAAAACGCGACTCCAATTGTCCACGCAGGTTGAT
AGCGGCATCAAGTTCACTGGACCCATTCACTGCCTCAAGTACATAGTAAA
AACGGAGGGTATCAGAGGTGCCTTCAAGGGATTAACAGCCACCATTCTAA
GGGATATTCCAGGCTTTGCCAGCTACTTTGTGTCCTTCGAGTACCTTATG
CGTCAAGTGGAGACACCCGGCGTTGCGTACACTCTAATGGCCGGCGGATG
TGCTGGCATGTCGTCCTGGTTGGCGTGCTACCCCATCGACGTGGTGAAGA
CCCACATGCAGGCCGATGCCCTGGGCGCGAATGCCAAATACAATGGCTTC
ATCGACTGTGCCATGAAGGGCTTTAGGAACGAGGGACCGCAGTACTTCTT
TCGCGGTCTAACTCCACCTTGATCCGGGCTTTTCCGATGAACGCCGCCTG
CTTCTTTGTGGTGTCCTGGGTACTGGACATCTGCAATGCCCAGGGCGGCA
BS15375.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:19:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4995-PA | 1200 | CG4995-RA | 118..862 | 17..761 | 3725 | 100 | Plus |
CG4995-PC | 1083 | CG4995-RC | 1..745 | 17..761 | 3725 | 100 | Plus |
CG4995-PB | 1200 | CG4995-RB | 118..862 | 17..761 | 3725 | 100 | Plus |
CG4995-PA | 1200 | CG4995-RA | 862..952 | 760..850 | 430 | 98.9 | Plus |
CG4995-PC | 1083 | CG4995-RC | 745..835 | 760..850 | 430 | 98.9 | Plus |
CG4995-PB | 1200 | CG4995-RB | 862..952 | 760..850 | 430 | 98.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:26:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4995-RD | 1246 | CG4995-RD | 139..973 | 17..850 | 4135 | 99.8 | Plus |
CG4995-RB | 1431 | CG4995-RB | 324..1158 | 17..850 | 4135 | 99.8 | Plus |
CG4995-RC | 1205 | CG4995-RC | 98..932 | 17..850 | 4135 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:25:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10323847..10324310 | 50..513 | 2320 | 100 | Plus |
2L | 23513712 | 2L | 10324375..10324717 | 509..850 | 1650 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:25:59 has no hits.
BS15375.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:25:14 Download gff for
BS15375.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4995-PC | 1..834 | 17..849 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:01:26 Download gff for
BS15375.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4995-PB | 118..951 | 17..849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:57:17 Download gff for
BS15375.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4995-RC | 98..931 | 17..849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:03:19 Download gff for
BS15375.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4995-RC | 98..931 | 17..849 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:03:19 Download gff for
BS15375.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10324379..10324716 | 513..849 | 99 | | Plus |
2L | 10323746..10323779 | 17..50 | 100 | -> | Plus |
2L | 10323848..10324309 | 51..512 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:57:17 Download gff for
BS15375.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10323746..10323779 | 17..50 | 100 | -> | Plus |
arm_2L | 10323848..10324309 | 51..512 | 100 | -> | Plus |
arm_2L | 10324379..10324716 | 513..849 | 99 | | Plus |
BS15375.complete Sequence
1115 bp assembled on 2006-11-01
GenBank Submission: FJ637927
> BS15375.complete
GAAGTTATCAGTCGACATGGTTGTGGATTTCGTAGCCGGACTCCTGGGCG
GAGCTGCTGGTGTTCTTGTCGGCCATCCCTTCGATACCGTGAAGGTCCAC
CTGCAAACCGATGATCCTCGCAATCCCAAGTACAAAGGCACATTCCACTG
CTTCCGGACGATAGTGCAAAGAGACAAATTCATAGGATTATATCGTGGTA
TCAGCAGTCCCATGGGAGGAATCGGATTGGTGAACGCCATCGTTTTCGGG
GTCTACGGAAACGTGCAACGCTTGTCCAATGACCCCAATTCGCTGACGTC
ACACTTCTTCGCTGGCTCCATCGCTGGTGTCGCCCAGGGTTTCGTGTGTG
CGCCCATGGAGTTGGCCAAAACGCGACTCCAATTGTCCACGCAGGTTGAT
AGCGGCATCAAGTTCACTGGACCCATTCACTGCCTCAAGTACATAGTAAA
AACGGAGGGTATCAGAGGTGCCTTCAAGGGATTAACAGCCACCATTCTAA
GGGATATTCCAGGCTTTGCCAGCTACTTTGTGTCCTTCGAGTACCTTATG
CGTCAAGTGGAGACACCCGGCGTTGCGTACACTCTAATGGCCGGCGGATG
TGCTGGCATGTCGTCCTGGTTGGCGTGCTACCCCATCGACGTGGTGAAGA
CCCACATGCAGGCCGATGCCCTGGGCGCGAATGCCAAATACAATGGCTTC
ATCGACTGTGCCATGAAGGGCTTTAGGAACGAGGGACCGCAGTACTTCTT
TCGCGGTCTAAACTCCACCTTGATCCGGGCTTTTCCGATGAACGCCGCCT
GCTTCTTTGTGGTGTCCTGGGTACTGGACATCTGCAATGCCAAGGGCGGC
ATGGATTCCGTAATGCATTCCGATCAGCCACTGACTCTCGTCAACCTAGA
CAACAAGAGCCAAGCGGACTTGGAGGCGACGGCGCCAACGGTTGAGGAAG
TGGTGCGCAAAATAATCACGGACAATGCCATGTCCCATCAGTATGTGTCC
ACGCCAAAGGATGTCGTTCACAGCCATTACACGAGTAGCACAATCAACAT
TCCCAAAGAATCTAAAGCACGTTTAGCATCCGATTGTAATTTAAAATAAA
AGCTTTCTAGACCAT
BS15375.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:50:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4995-RD | 1083 | CG4995-PD | 1..1083 | 17..1099 | 5415 | 100 | Plus |
CG4995-RB | 1200 | CG4995-PB | 118..1200 | 17..1099 | 5415 | 100 | Plus |
CG4995-RC | 1083 | CG4995-PC | 1..1083 | 17..1099 | 5415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:50:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4995-RD | 1246 | CG4995-RD | 139..1222 | 17..1100 | 5420 | 100 | Plus |
CG4995-RB | 1431 | CG4995-RB | 324..1407 | 17..1100 | 5420 | 100 | Plus |
CG4995-RC | 1205 | CG4995-RC | 98..1181 | 17..1100 | 5420 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:50:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10324375..10324966 | 509..1100 | 2960 | 100 | Plus |
2L | 23513712 | 2L | 10323847..10324310 | 50..513 | 2320 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:50:01 has no hits.
BS15375.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:32:56 Download gff for
BS15375.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4995-RB | 118..1200 | 17..1099 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:05:29 Download gff for
BS15375.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4995-RB | 324..1407 | 17..1100 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:55:48 Download gff for
BS15375.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4995-RC | 98..1178 | 17..1097 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:32:56 Download gff for
BS15375.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4995-RB | 324..1407 | 17..1100 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:55:37 Download gff for
BS15375.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4995-RC | 98..1178 | 17..1097 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:55:37 Download gff for
BS15375.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10323746..10323779 | 17..50 | 100 | -> | Plus |
2L | 10323848..10324309 | 51..512 | 100 | -> | Plus |
2L | 10324379..10324963 | 513..1097 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:55:48 Download gff for
BS15375.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10323746..10323779 | 17..50 | 100 | -> | Plus |
arm_2L | 10323848..10324309 | 51..512 | 100 | -> | Plus |
arm_2L | 10324379..10324963 | 513..1097 | 100 | | Plus |
BS15375.pep Sequence
Translation from 16 to 1098
> BS15375.pep
MVVDFVAGLLGGAAGVLVGHPFDTVKVHLQTDDPRNPKYKGTFHCFRTIV
QRDKFIGLYRGISSPMGGIGLVNAIVFGVYGNVQRLSNDPNSLTSHFFAG
SIAGVAQGFVCAPMELAKTRLQLSTQVDSGIKFTGPIHCLKYIVKTEGIR
GAFKGLTATILRDIPGFASYFVSFEYLMRQVETPGVAYTLMAGGCAGMSS
WLACYPIDVVKTHMQADALGANAKYNGFIDCAMKGFRNEGPQYFFRGLNS
TLIRAFPMNAACFFVVSWVLDICNAKGGMDSVMHSDQPLTLVNLDNKSQA
DLEATAPTVEEVVRKIITDNAMSHQYVSTPKDVVHSHYTSSTINIPKESK
ARLASDCNLK*
BS15375.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:30:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4995-PD | 360 | CG4995-PD | 1..360 | 1..360 | 1889 | 100 | Plus |
CG4995-PC | 360 | CG4995-PC | 1..360 | 1..360 | 1889 | 100 | Plus |
CG4995-PB | 399 | CG4995-PB | 40..399 | 1..360 | 1889 | 100 | Plus |
CG4995-PA | 399 | CG4995-PA | 40..399 | 1..360 | 1889 | 100 | Plus |
CG3476-PA | 299 | CG3476-PA | 15..299 | 2..275 | 403 | 37.4 | Plus |