Clone BS15381 Report

Search the DGRC for BS15381

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:153
Well:81
Vector:pDNR-Dual
Associated Gene/Transcriptl(2)35Di-RA
Protein status:BS15381.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15381.3prime Sequence

534 bp (534 high quality bases) assembled on 2006-10-24

> BS15381.3prime
ATGGTCTAGAAAGCTTTCAAGCTTTCAGCGGCGACTCGTTGAATCCGCGA
GCCGCGTAATCGGAAGGCGCCGATCGATCGGAGACCTTGGGATAGCCCTC
ATCTCCGGGCACGCACTGCTTGCGCGAGTGGATCACACGCCAGCCGCCCT
TCCGGGTCCAGTCATTCTGATTGTACTTGAAGTAGTAGGCGCCGGCGTAG
ATTCCGGTTAGGGCGAGCAGAGCCTTTCCGGTCCAGAAGCGCACGGTGTA
CGCGCGCTGAAAGCCCAGGACGGGTTCCAAAACATTGCAGACCTTGTCGA
GGGGAGCGCGGTAGAAGCGCTTGATGGGGTTGTTCAGCTCCAGCTCCAGG
GCGGGCACCTTGCGGGGTCCATGGTGCAGCTCCTGGTCCTTCAGCCACTG
TTTGCGCCAGGCGCGCTCCTCCGGCGACATGCCGATCAGGCGCTCCCGCT
CCCGCACCATGCGGCCCGCAATTACCATCGGCTTCACGCCGCCCGTTTCC
GAGGCACCACCAGCTACCATGTCGACTGATAACT

BS15381.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:19:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG13240-PA 504 l(2)35Di-RA 1..504 520..17 2445 99.4 Minus
CG13240-PB 417 l(2)35Di-RB 1..358 520..163 1740 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:54:49
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)35Di-RC 992 CG13240-RC 103..607 520..16 2480 99.4 Minus
l(2)35Di-RA 710 CG13240-RA 103..607 520..16 2480 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:54:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15750721..15750976 265..520 1265 99.6 Plus
2L 23513712 2L 15749704..15749851 16..163 725 99.3 Plus
2L 23513712 2L 15750549..15750652 163..266 505 99 Plus
Blast to na_te.dros performed on 2015-02-13 05:54:48 has no hits.

BS15381.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:25:22 Download gff for BS15381.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13240-PA 1..504 17..520 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:01:36 Download gff for BS15381.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13240-PA 1..504 17..520 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:54:21 Download gff for BS15381.3prime
Subject Subject Range Query Range Percent Splice Strand
l(2)35Di-RA 103..607 16..520 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:57:00 Download gff for BS15381.3prime
Subject Subject Range Query Range Percent Splice Strand
l(2)35Di-RA 103..607 16..520 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:57:00 Download gff for BS15381.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 15749704..15749851 16..163 99 <- Plus
2L 15750550..15750651 164..265 99 <- Plus
2L 15750722..15750976 266..520 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:54:21 Download gff for BS15381.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15749704..15749851 16..163 99 <- Plus
arm_2L 15750550..15750651 164..265 99 <- Plus
arm_2L 15750722..15750976 266..520 99   Plus

BS15381.5prime Sequence

534 bp (534 high quality bases) assembled on 2006-10-24

> BS15381.5prime
GAAGTTACCCTTCGAGATGGTAGCTGGTGGTGCCTCGGAAACGGGCGGCG
TGAAGCCGATGGTAATTGCGGGCCGCATGGTGCGGGAGCGGGAGCGCCTG
ATCGGCATGTCGCCGGAGGAGCGCGCCTGGCGCAAACAGTGGCTGAAGGA
CCAGGAGCTGCACCATGGACCCCGCAAGGTGCCCGCCCTGGAGCTGGAGC
TGAACAACCCCATCAAGCGCTTCTACCGCGCTCCCCTCGACAAGGTCTGC
AATGTTTTGGAACCCGTCCTGGGCTTTCAGCGCGCGTACACCGTGCGCTT
CTGGACCGGAAAGGCTCTGCTCGCCCTAACCGGAATCTACGCCGGCGCCT
ACTACTTCAAGTACAATCAGAATGACTGGACCCGGAAGGGCGGCTGGCGT
GTGATCCACTCGCGCAAGCAGTGCGTGCCCGGAGATGAGGGCTATCCCAA
GGTCTCCGATCGATCGGCGCCTTCCGATTACGCGGCTCGCGGATTCAACG
AGTCGCCGCTGAAAGCTTGAAAGCTTTCTAGACC

BS15381.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:19:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG13240-PA 504 l(2)35Di-RA 1..504 17..520 2445 99.4 Plus
CG13240-PB 417 l(2)35Di-RB 1..358 17..374 1740 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:53:26
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)35Di-RC 992 CG13240-RC 103..607 17..521 2480 99.4 Plus
l(2)35Di-RA 710 CG13240-RA 103..607 17..521 2480 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:53:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15750721..15750976 272..17 1265 99.6 Minus
2L 23513712 2L 15749704..15749851 521..374 725 99.3 Minus
2L 23513712 2L 15750549..15750652 374..271 505 99 Minus
Blast to na_te.dros performed on 2015-02-13 12:53:25 has no hits.

BS15381.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:25:23 Download gff for BS15381.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13240-PA 1..504 17..520 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:01:38 Download gff for BS15381.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13240-PA 1..504 17..520 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:05:16 Download gff for BS15381.5prime
Subject Subject Range Query Range Percent Splice Strand
l(2)35Di-RA 103..607 17..521 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:38:16 Download gff for BS15381.5prime
Subject Subject Range Query Range Percent Splice Strand
l(2)35Di-RA 103..607 17..521 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:38:16 Download gff for BS15381.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 15749704..15749851 374..521 99 <- Minus
2L 15750550..15750651 272..373 99 <- Minus
2L 15750722..15750976 17..271 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:05:16 Download gff for BS15381.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15749704..15749851 374..521 99 <- Minus
arm_2L 15750550..15750651 272..373 99 <- Minus
arm_2L 15750722..15750976 17..271 99   Minus

BS15381.complete Sequence

536 bp assembled on 2006-11-01

GenBank Submission: FJ637928

> BS15381.complete
GAAGTTATCAGTCGACATGGTAGCTGGTGGTGCCTCGGAAACGGGCGGCG
TGAAGCCGATGGTAATTGCGGGCCGCATGGTGCGGGAGCGGGAGCGCCTG
ATCGGCATGTCGCCGGAGGAGCGCGCCTGGCGCAAACAGTGGCTGAAGGA
CCAGGAGCTGCACCATGGACCCCGCAAGGTGCCCGCCCTGGAGCTGGAGC
TGAACAACCCCATCAAGCGCTTCTACCGCGCTCCCCTCGACAAGGTCTGC
AATGTTTTGGAACCCGTCCTGGGCTTTCAGCGCGCGTACACCGTGCGCTT
CTGGACCGGAAAGGCTCTGCTCGCCCTAACCGGAATCTACGCCGGCGCCT
ACTACTTCAAGTACAATCAGAATGACTGGACCCGGAAGGGCGGCTGGCGT
GTGATCCACTCGCGCAAGCAGTGCGTGCCCGGAGATGAGGGCTATCCCAA
GGTCTCCGATCGATCGGCGCCTTCCGATTACGCGGCTCGCGGATTCAACG
AGTCGCCGCTGAAAGCTTGAAAGCTTTCTAGACCAT

BS15381.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:01:48
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)35Di-RC 504 CG13240-PC 1..504 17..520 2475 99.4 Plus
l(2)35Di-RA 504 CG13240-PA 1..504 17..520 2475 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:01:49
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)35Di-RC 992 CG13240-RC 103..607 17..521 2480 99.4 Plus
l(2)35Di-RA 710 CG13240-RA 103..607 17..521 2480 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:01:46
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15750721..15750976 272..17 1265 99.6 Minus
2L 23513712 2L 15749704..15749851 521..374 725 99.3 Minus
2L 23513712 2L 15750549..15750652 374..271 505 99 Minus
Blast to na_te.dros performed on 2014-11-27 11:01:47 has no hits.

BS15381.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:32:57 Download gff for BS15381.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)35Di-RA 1..504 17..520 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:05:30 Download gff for BS15381.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)35Di-RA 79..583 17..521 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:02:54 Download gff for BS15381.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)35Di-RA 103..605 17..519 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:32:57 Download gff for BS15381.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)35Di-RA 79..583 17..521 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:37:04 Download gff for BS15381.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)35Di-RA 103..605 17..519 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:37:04 Download gff for BS15381.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15750722..15750976 17..271 99   Minus
2L 15749706..15749851 374..519 99 <- Minus
2L 15750550..15750651 272..373 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:02:54 Download gff for BS15381.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15749706..15749851 374..519 99 <- Minus
arm_2L 15750550..15750651 272..373 99 <- Minus
arm_2L 15750722..15750976 17..271 99   Minus

BS15381.pep Sequence

Translation from 16 to 519

> BS15381.pep
MVAGGASETGGVKPMVIAGRMVRERERLIGMSPEERAWRKQWLKDQELHH
GPRKVPALELELNNPIKRFYRAPLDKVCNVLEPVLGFQRAYTVRFWTGKA
LLALTGIYAGAYYFKYNQNDWTRKGGWRVIHSRKQCVPGDEGYPKVSDRS
APSDYAARGFNESPLKA*

BS15381.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:30:47
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)35Di-PC 167 CG13240-PC 1..167 1..167 901 100 Plus
l(2)35Di-PA 167 CG13240-PA 1..167 1..167 901 100 Plus