Clone Sequence Records
BS15381.3prime Sequence
534 bp (534 high quality bases) assembled on 2006-10-24
> BS15381.3prime
ATGGTCTAGAAAGCTTTCAAGCTTTCAGCGGCGACTCGTTGAATCCGCGA
GCCGCGTAATCGGAAGGCGCCGATCGATCGGAGACCTTGGGATAGCCCTC
ATCTCCGGGCACGCACTGCTTGCGCGAGTGGATCACACGCCAGCCGCCCT
TCCGGGTCCAGTCATTCTGATTGTACTTGAAGTAGTAGGCGCCGGCGTAG
ATTCCGGTTAGGGCGAGCAGAGCCTTTCCGGTCCAGAAGCGCACGGTGTA
CGCGCGCTGAAAGCCCAGGACGGGTTCCAAAACATTGCAGACCTTGTCGA
GGGGAGCGCGGTAGAAGCGCTTGATGGGGTTGTTCAGCTCCAGCTCCAGG
GCGGGCACCTTGCGGGGTCCATGGTGCAGCTCCTGGTCCTTCAGCCACTG
TTTGCGCCAGGCGCGCTCCTCCGGCGACATGCCGATCAGGCGCTCCCGCT
CCCGCACCATGCGGCCCGCAATTACCATCGGCTTCACGCCGCCCGTTTCC
GAGGCACCACCAGCTACCATGTCGACTGATAACT
BS15381.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:19:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13240-PA | 504 | l(2)35Di-RA | 1..504 | 520..17 | 2445 | 99.4 | Minus |
CG13240-PB | 417 | l(2)35Di-RB | 1..358 | 520..163 | 1740 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:54:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)35Di-RC | 992 | CG13240-RC | 103..607 | 520..16 | 2480 | 99.4 | Minus |
l(2)35Di-RA | 710 | CG13240-RA | 103..607 | 520..16 | 2480 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:54:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15750721..15750976 | 265..520 | 1265 | 99.6 | Plus |
2L | 23513712 | 2L | 15749704..15749851 | 16..163 | 725 | 99.3 | Plus |
2L | 23513712 | 2L | 15750549..15750652 | 163..266 | 505 | 99 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:54:48 has no hits.
BS15381.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:25:22 Download gff for
BS15381.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13240-PA | 1..504 | 17..520 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:01:36 Download gff for
BS15381.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13240-PA | 1..504 | 17..520 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:54:21 Download gff for
BS15381.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)35Di-RA | 103..607 | 16..520 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:57:00 Download gff for
BS15381.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)35Di-RA | 103..607 | 16..520 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:57:00 Download gff for
BS15381.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15749704..15749851 | 16..163 | 99 | <- | Plus |
2L | 15750550..15750651 | 164..265 | 99 | <- | Plus |
2L | 15750722..15750976 | 266..520 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:54:21 Download gff for
BS15381.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15749704..15749851 | 16..163 | 99 | <- | Plus |
arm_2L | 15750550..15750651 | 164..265 | 99 | <- | Plus |
arm_2L | 15750722..15750976 | 266..520 | 99 | | Plus |
BS15381.5prime Sequence
534 bp (534 high quality bases) assembled on 2006-10-24
> BS15381.5prime
GAAGTTACCCTTCGAGATGGTAGCTGGTGGTGCCTCGGAAACGGGCGGCG
TGAAGCCGATGGTAATTGCGGGCCGCATGGTGCGGGAGCGGGAGCGCCTG
ATCGGCATGTCGCCGGAGGAGCGCGCCTGGCGCAAACAGTGGCTGAAGGA
CCAGGAGCTGCACCATGGACCCCGCAAGGTGCCCGCCCTGGAGCTGGAGC
TGAACAACCCCATCAAGCGCTTCTACCGCGCTCCCCTCGACAAGGTCTGC
AATGTTTTGGAACCCGTCCTGGGCTTTCAGCGCGCGTACACCGTGCGCTT
CTGGACCGGAAAGGCTCTGCTCGCCCTAACCGGAATCTACGCCGGCGCCT
ACTACTTCAAGTACAATCAGAATGACTGGACCCGGAAGGGCGGCTGGCGT
GTGATCCACTCGCGCAAGCAGTGCGTGCCCGGAGATGAGGGCTATCCCAA
GGTCTCCGATCGATCGGCGCCTTCCGATTACGCGGCTCGCGGATTCAACG
AGTCGCCGCTGAAAGCTTGAAAGCTTTCTAGACC
BS15381.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:19:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13240-PA | 504 | l(2)35Di-RA | 1..504 | 17..520 | 2445 | 99.4 | Plus |
CG13240-PB | 417 | l(2)35Di-RB | 1..358 | 17..374 | 1740 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:53:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)35Di-RC | 992 | CG13240-RC | 103..607 | 17..521 | 2480 | 99.4 | Plus |
l(2)35Di-RA | 710 | CG13240-RA | 103..607 | 17..521 | 2480 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:53:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15750721..15750976 | 272..17 | 1265 | 99.6 | Minus |
2L | 23513712 | 2L | 15749704..15749851 | 521..374 | 725 | 99.3 | Minus |
2L | 23513712 | 2L | 15750549..15750652 | 374..271 | 505 | 99 | Minus |
Blast to na_te.dros performed on 2015-02-13 12:53:25 has no hits.
BS15381.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:25:23 Download gff for
BS15381.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13240-PA | 1..504 | 17..520 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:01:38 Download gff for
BS15381.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13240-PA | 1..504 | 17..520 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:05:16 Download gff for
BS15381.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)35Di-RA | 103..607 | 17..521 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:38:16 Download gff for
BS15381.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)35Di-RA | 103..607 | 17..521 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:38:16 Download gff for
BS15381.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15749704..15749851 | 374..521 | 99 | <- | Minus |
2L | 15750550..15750651 | 272..373 | 99 | <- | Minus |
2L | 15750722..15750976 | 17..271 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:05:16 Download gff for
BS15381.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15749704..15749851 | 374..521 | 99 | <- | Minus |
arm_2L | 15750550..15750651 | 272..373 | 99 | <- | Minus |
arm_2L | 15750722..15750976 | 17..271 | 99 | | Minus |
BS15381.complete Sequence
536 bp assembled on 2006-11-01
GenBank Submission: FJ637928
> BS15381.complete
GAAGTTATCAGTCGACATGGTAGCTGGTGGTGCCTCGGAAACGGGCGGCG
TGAAGCCGATGGTAATTGCGGGCCGCATGGTGCGGGAGCGGGAGCGCCTG
ATCGGCATGTCGCCGGAGGAGCGCGCCTGGCGCAAACAGTGGCTGAAGGA
CCAGGAGCTGCACCATGGACCCCGCAAGGTGCCCGCCCTGGAGCTGGAGC
TGAACAACCCCATCAAGCGCTTCTACCGCGCTCCCCTCGACAAGGTCTGC
AATGTTTTGGAACCCGTCCTGGGCTTTCAGCGCGCGTACACCGTGCGCTT
CTGGACCGGAAAGGCTCTGCTCGCCCTAACCGGAATCTACGCCGGCGCCT
ACTACTTCAAGTACAATCAGAATGACTGGACCCGGAAGGGCGGCTGGCGT
GTGATCCACTCGCGCAAGCAGTGCGTGCCCGGAGATGAGGGCTATCCCAA
GGTCTCCGATCGATCGGCGCCTTCCGATTACGCGGCTCGCGGATTCAACG
AGTCGCCGCTGAAAGCTTGAAAGCTTTCTAGACCAT
BS15381.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:01:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)35Di-RC | 504 | CG13240-PC | 1..504 | 17..520 | 2475 | 99.4 | Plus |
l(2)35Di-RA | 504 | CG13240-PA | 1..504 | 17..520 | 2475 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:01:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)35Di-RC | 992 | CG13240-RC | 103..607 | 17..521 | 2480 | 99.4 | Plus |
l(2)35Di-RA | 710 | CG13240-RA | 103..607 | 17..521 | 2480 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:01:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15750721..15750976 | 272..17 | 1265 | 99.6 | Minus |
2L | 23513712 | 2L | 15749704..15749851 | 521..374 | 725 | 99.3 | Minus |
2L | 23513712 | 2L | 15750549..15750652 | 374..271 | 505 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-27 11:01:47 has no hits.
BS15381.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:32:57 Download gff for
BS15381.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)35Di-RA | 1..504 | 17..520 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:05:30 Download gff for
BS15381.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)35Di-RA | 79..583 | 17..521 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:02:54 Download gff for
BS15381.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)35Di-RA | 103..605 | 17..519 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:32:57 Download gff for
BS15381.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)35Di-RA | 79..583 | 17..521 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:37:04 Download gff for
BS15381.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)35Di-RA | 103..605 | 17..519 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:37:04 Download gff for
BS15381.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15750722..15750976 | 17..271 | 99 | | Minus |
2L | 15749706..15749851 | 374..519 | 99 | <- | Minus |
2L | 15750550..15750651 | 272..373 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:02:54 Download gff for
BS15381.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15749706..15749851 | 374..519 | 99 | <- | Minus |
arm_2L | 15750550..15750651 | 272..373 | 99 | <- | Minus |
arm_2L | 15750722..15750976 | 17..271 | 99 | | Minus |
BS15381.pep Sequence
Translation from 16 to 519
> BS15381.pep
MVAGGASETGGVKPMVIAGRMVRERERLIGMSPEERAWRKQWLKDQELHH
GPRKVPALELELNNPIKRFYRAPLDKVCNVLEPVLGFQRAYTVRFWTGKA
LLALTGIYAGAYYFKYNQNDWTRKGGWRVIHSRKQCVPGDEGYPKVSDRS
APSDYAARGFNESPLKA*
BS15381.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:30:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)35Di-PC | 167 | CG13240-PC | 1..167 | 1..167 | 901 | 100 | Plus |
l(2)35Di-PA | 167 | CG13240-PA | 1..167 | 1..167 | 901 | 100 | Plus |