Clone Sequence Records
BS15384.complete Sequence
1601 bp assembled on 2009-07-30
GenBank Submission: KX801811
> BS15384.complete
GAAGTTATCAGTCGACATGAGTAAGGCGGATTCTAACTCACGACAGGGCT
CCTACAAGGCCAACAGCATTAACACGCAGGACTCACGCATGCGCCGCCAT
GAGGTGACCATCGAGCTGCGCAAGTCCAAAAAGGAGGACCAGATGTTCAA
GCGGCGCAACATCAACGACGAGGATCTAACGTCGCCGCTCAAAGAGCTCA
ATGGCCAGTCGCCGGTGCAGCTGTCCGTGGACGAGATAGTGGCGGCCATG
AACAGCGAGGATCAGGAGCGCCAGTTTCTGGGCATGCAGTCTGCCCGCAA
GATGCTCAGTCGGGAGCGCAATCCACCCATCGACCTGATGATCGGCCATG
GTATTGTGCCCATTTGCATACGCTTCCTGCAGAATACCAACAACTCAATG
CTGCAGTTCGAGGCCGCTTGGGCGCTTACCAACATCGCCTCTGGCACATC
CGACCAAACGCGCTGCGTTATCGAACACAATGCTGTGCCGCATTTCGTGG
CTCTGCTCCAGTCCAAGTCCATGAACCTGGCCGAGCAGGCAGTCTGGGCT
CTGGGCAACATTGCCGGCGACGGAGCCGCCGCCCGCGACATTGTCATCCA
CCACAACGTAATTGACGGAATCTTGCCACTGATCAACAATGAGACACCGC
TCTCTTTTCTGCGCAACATCGTCTGGCTGATGTCCAACCTGTGCCGGAAC
AAGAATCCATCGCCGCCATTCGATCAGGTGAAGCGGCTGTTGCCCGTCCT
GTCGCAGCTTCTGCTTAGTCAGGACATCCAAGTGCTGGCCGACGCCTGCT
GGGCTTTGTCCTACGTCACGGACGACGATAACACCAAGATCCAGGCTGTG
GTCGACTCGGACGCAGTGCCGCGCCTGGTCAAACTGCTGCAAATGGACGA
GCCGAGCATTATTGTGCCCGCCCTGCGCAGCGTTGGCAACATTGTGACTG
GCACAGATCAACAGACTGACGTTGTAATTGCATCTGGAGGTTTACCAAGG
CTGGGACTCCTTCTACAGCACAACAAAAGCAACATTGTGAAGGAGGCTGC
CTGGACGGTCAGCAACATCACAGCAGGTAACCAGAAGCAGATCCAGGCTG
TGATTCAGGCCGGCATCTTCCAGCAGCTGCGCACCGTGCTGGAGAAGGGT
GATTTCAAGGCTCAAAAAGAGGCTGCCTGGGCGGTGACAAACACCACGAC
ATCTGGCACTCCCGAACAGATCGTCGATCTAATTGAGAAGTACAAAATAT
TGAAGCCTTTTATCGATTTGCTGGACACAAAGGATCCGCGTACCATCAAG
GTGGTGCAGACGGGCCTATCCAATCTGTTTGCCCTGGCGGAGAAACTTGG
TGGCACCGAGAACCTATGCTTGATGGTCGAGGAGATGGGCGGTCTAGACA
AGCTGGAAACTCTGCAGCAGCACGAGAACGAGGAGGTCTACAAGAAGGCC
TACGCCATCATTGACACATACTTCAGCAACGGCGACGACGAGGCCGAGCA
AGAGCTCGCACCTCAGGAGGTCAACGGAGCCCTCGAGTTCAATGCCACCC
AGCCCAAGGCTCCCGAAGGTGGCTACACGTTCTAAAAGCTTTCTAGACCA
T
BS15384.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:26:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pen-RA | 1569 | CG4799-PA | 1..1569 | 17..1585 | 7845 | 100 | Plus |
Kap-alpha3-RD | 1545 | CG9423-PD | 371..425 | 396..450 | 200 | 90.9 | Plus |
Kap-alpha3-RC | 1545 | CG9423-PC | 371..425 | 396..450 | 200 | 90.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pen-RA | 2577 | CG4799-RA | 381..1949 | 17..1585 | 7845 | 100 | Plus |
Kap-alpha3-RD | 2261 | CG9423-RD | 577..631 | 396..450 | 200 | 90.9 | Plus |
Kap-alpha3-RC | 2663 | CG9423-RC | 499..553 | 396..450 | 200 | 90.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10058845..10059467 | 963..1585 | 3115 | 100 | Plus |
2L | 23513712 | 2L | 10058195..10058769 | 390..964 | 2860 | 99.8 | Plus |
2L | 23513712 | 2L | 10057819..10058134 | 78..393 | 1580 | 100 | Plus |
2L | 23513712 | 2L | 10057697..10057760 | 17..80 | 320 | 100 | Plus |
3R | 32079331 | 3R | 9576784..9576838 | 450..396 | 200 | 90.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:26:43 has no hits.
BS15384.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-31 08:53:32 Download gff for
BS15384.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pen-RA | 375..1941 | 17..1583 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:47:48 Download gff for
BS15384.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pen-RA | 381..1947 | 17..1583 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:48:44 Download gff for
BS15384.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pen-RA | 381..1947 | 17..1583 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:48:44 Download gff for
BS15384.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10057697..10057759 | 17..79 | 100 | -> | Plus |
2L | 10057821..10058134 | 80..393 | 100 | -> | Plus |
2L | 10058199..10058769 | 394..964 | 100 | -> | Plus |
2L | 10058847..10059465 | 965..1583 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:47:48 Download gff for
BS15384.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10057697..10057759 | 17..79 | 100 | -> | Plus |
arm_2L | 10057821..10058134 | 80..393 | 100 | -> | Plus |
arm_2L | 10058199..10058769 | 394..964 | 100 | -> | Plus |
arm_2L | 10058847..10059465 | 965..1583 | 100 | | Plus |
BS15384.3prime Sequence
757 bp (742 high quality bases) assembled on 2006-10-24
> BS15384.3prime
ATGGTCTAGAAAGCTTTTAGAACGTGTAGCCACCTTCGGGAGCCTTGGGC
TGGGTGGCATTGAACTCGAGGGCTCCGTTGACCTCCTGAGGTGCGAGCTC
TTGCTCGGCCTCGTCGTCGCCGTTGCTGAAGTATGTGTCAATGATGGCGT
AGGCCTTCTTGTAGACCTCCTCGTTCTCGTGCTGCTGCAGAGTTTCCAGC
TTGTCTAGACCGCCCATCTCCTCGACCATCAAGCATAGGTTCTCGGTGCC
ACCAAGTTTCTCCGCCAGGGCAAACAGATTGGATAGGCCCGTCTGCACCA
CCTTGATGGTACGCGGATCCTTTGTGTCCAGCAAATCGATAAAAGGCTTC
AATATTTTGTACTTCTCAATTAGATCGACGATCTGTTCGGGAGTGCCAGA
TGTCGTGGTGTTTGTCACCGCCCAGGCAGCCTCTTTTTGAGCCTTGAAAT
CACCCTTCTCCAGCACGGTGCGCAGCTGCTGGAAGATGCCGGCCTGAATC
ACAGCCTGGATCTGCTTCTGGTTACCTGCTGTGATGTTGCTGACCGTCCA
GGCAGCCTCCTTCACAATGTTGCTTTTGTTGTGCTGTAGAAGGAGTCCCA
GCCTTGGTAAACCTCCAGATGCAATTACAACGTCAGTCTGTTGATCTGTG
CCAGTCACAATGTTGCCAACGCTGCGCAGGGCGGGCACAATAATGCTCGG
CTCGTCCATTTGCAGCAGTTTGACCAGGCGCGGCACTGCGTCCGAGTCGA
CCACAGC
BS15384.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:19:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4799-PA | 1569 | Pen-RA | 829..1569 | 757..17 | 3705 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:58:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pen-RA | 2577 | CG4799-RA | 1209..1949 | 757..17 | 3705 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:58:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10058845..10059467 | 639..17 | 3115 | 100 | Minus |
2L | 23513712 | 2L | 10058650..10058769 | 757..638 | 600 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:58:25 has no hits.
BS15384.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:25:27 Download gff for
BS15384.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pen-PA | 829..1569 | 17..757 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:01:44 Download gff for
BS15384.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4799-PA | 829..1569 | 17..757 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 06:30:51 Download gff for
BS15384.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pen-RA | 1209..1953 | 13..757 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:58:33 Download gff for
BS15384.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pen-RA | 1209..1953 | 13..757 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:58:33 Download gff for
BS15384.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10058650..10058769 | 638..757 | 100 | -> | Minus |
2L | 10058847..10059471 | 13..637 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 06:30:51 Download gff for
BS15384.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10058650..10058769 | 638..757 | 100 | -> | Minus |
arm_2L | 10058847..10059471 | 13..637 | 99 | | Minus |
BS15384.5prime Sequence
768 bp (701 high quality bases) assembled on 2006-10-24
> BS15384.5prime
GAAGTTATCATTCGACATGAGTAAGGCGGATTCTAACTCACGACAGGGCT
CCTACAAGGCCAACAGCATTAACACGCAGGACTCACGCATGCGCCGCCAT
GAGGTGACCATCGAGCTGCGCAAGTCCAAAAAGGAGGACCAGATGTTCAA
GCGGCGCAACATCAACGACGAGGATCTAACGTCGCCGCTCAAAGAGCTCA
ATGGCCAGTCGCCGGTGCAGCTGTCCGTGGACGAGATAGTGGCGGCCATG
AACAGCGAGGATCAGGAGCGCCAGTTTCTGGGCATGCAGTCTGCCCGCAA
GATGCTCAGTCGGGAGCGCAATCCACCCATCGACCTGATGATCGGCCATG
GTATTGTGCCCATTTGCATACGCTTCCTGCAGAATACCAACAACTCAATG
CTGCAGTTCGAGGCCGCTTGGGCGCTTACCAACATCGCCTCTGGCACATC
CGACCAAACGCGCTGCGTTATCGAACACAATGCTGTGCCGCATTTCGTGG
CTCTGCTCCAGTCCAAGTCCATGAACCTGGCCGAGCAGGCAGTCTGGGCT
CTGGGCAACATTGCCGGCGACGGAGCCGCCGCCCGCGACATTGTCATCCA
CCACAACGTAATTGACGGAATCTTGCCACTGATCAACAATGAGACACCGC
TCTCTTTTCTGCGCAACATCGTCTGGCTGATGTCCAACCTGTGCCGGAAC
AAGAATCCATCGCCGCCATTCGATCAGGTGAAGCGGCTGTTGCCCGTCCT
GTCGCAGCTTCTGCTTAG
BS15384.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:19:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4799-PA | 1569 | Pen-RA | 1..752 | 17..768 | 3760 | 100 | Plus |
CG9423-PA | 1545 | Kap-alpha3-RA | 371..425 | 396..450 | 150 | 90.9 | Plus |
CG9423-PB | 1545 | Kap-alpha3-RB | 371..425 | 396..450 | 150 | 90.9 | Plus |
CG9423-PC | 1545 | Kap-alpha3-RC | 371..425 | 396..450 | 150 | 90.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:08:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pen-RA | 2577 | CG4799-RA | 381..1132 | 17..768 | 3760 | 100 | Plus |
Kap-alpha3-RD | 2261 | CG9423-RD | 577..631 | 396..450 | 200 | 90.9 | Plus |
Kap-alpha3-RC | 2663 | CG9423-RC | 499..553 | 396..450 | 200 | 90.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:08:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10058195..10058573 | 390..768 | 1880 | 99.7 | Plus |
2L | 23513712 | 2L | 10057819..10058134 | 78..393 | 1580 | 100 | Plus |
2L | 23513712 | 2L | 10057697..10057760 | 17..80 | 320 | 100 | Plus |
3R | 32079331 | 3R | 9576784..9576838 | 450..396 | 200 | 90.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:08:26 has no hits.
BS15384.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:25:28 Download gff for
BS15384.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pen-PA | 1..752 | 17..768 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:01:46 Download gff for
BS15384.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4799-PA | 1..752 | 17..768 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:24:49 Download gff for
BS15384.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pen-RA | 381..1132 | 17..768 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:44:55 Download gff for
BS15384.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pen-RA | 381..1132 | 17..768 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:44:55 Download gff for
BS15384.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10057821..10058134 | 80..393 | 100 | -> | Plus |
2L | 10057697..10057759 | 17..79 | 100 | -> | Plus |
2L | 10058199..10058573 | 394..768 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:24:49 Download gff for
BS15384.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10057697..10057759 | 17..79 | 100 | -> | Plus |
arm_2L | 10057821..10058134 | 80..393 | 100 | -> | Plus |
arm_2L | 10058199..10058573 | 394..768 | 100 | | Plus |
BS15384.pep Sequence
Translation from 16 to 1584
> BS15384.pep
MSKADSNSRQGSYKANSINTQDSRMRRHEVTIELRKSKKEDQMFKRRNIN
DEDLTSPLKELNGQSPVQLSVDEIVAAMNSEDQERQFLGMQSARKMLSRE
RNPPIDLMIGHGIVPICIRFLQNTNNSMLQFEAAWALTNIASGTSDQTRC
VIEHNAVPHFVALLQSKSMNLAEQAVWALGNIAGDGAAARDIVIHHNVID
GILPLINNETPLSFLRNIVWLMSNLCRNKNPSPPFDQVKRLLPVLSQLLL
SQDIQVLADACWALSYVTDDDNTKIQAVVDSDAVPRLVKLLQMDEPSIIV
PALRSVGNIVTGTDQQTDVVIASGGLPRLGLLLQHNKSNIVKEAAWTVSN
ITAGNQKQIQAVIQAGIFQQLRTVLEKGDFKAQKEAAWAVTNTTTSGTPE
QIVDLIEKYKILKPFIDLLDTKDPRTIKVVQTGLSNLFALAEKLGGTENL
CLMVEEMGGLDKLETLQQHENEEVYKKAYAIIDTYFSNGDDEAEQELAPQ
EVNGALEFNATQPKAPEGGYTF*
BS15384.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:29:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pen-PA | 522 | CG4799-PA | 1..522 | 1..522 | 2654 | 100 | Plus |
Kap-alpha3-PD | 514 | CG9423-PD | 1..514 | 1..522 | 1089 | 44.7 | Plus |
Kap-alpha3-PC | 514 | CG9423-PC | 1..514 | 1..522 | 1089 | 44.7 | Plus |
Kap-alpha3-PB | 514 | CG9423-PB | 1..514 | 1..522 | 1089 | 44.7 | Plus |
Kap-alpha3-PA | 514 | CG9423-PA | 1..514 | 1..522 | 1089 | 44.7 | Plus |