Clone BS15384 Report

Search the DGRC for BS15384

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:153
Well:84
Vector:pDNR-Dual
Associated Gene/TranscriptPen-RA
Protein status:BS15384.pep: full length peptide match
Sequenced Size:1601

Clone Sequence Records

BS15384.complete Sequence

1601 bp assembled on 2009-07-30

GenBank Submission: KX801811

> BS15384.complete
GAAGTTATCAGTCGACATGAGTAAGGCGGATTCTAACTCACGACAGGGCT
CCTACAAGGCCAACAGCATTAACACGCAGGACTCACGCATGCGCCGCCAT
GAGGTGACCATCGAGCTGCGCAAGTCCAAAAAGGAGGACCAGATGTTCAA
GCGGCGCAACATCAACGACGAGGATCTAACGTCGCCGCTCAAAGAGCTCA
ATGGCCAGTCGCCGGTGCAGCTGTCCGTGGACGAGATAGTGGCGGCCATG
AACAGCGAGGATCAGGAGCGCCAGTTTCTGGGCATGCAGTCTGCCCGCAA
GATGCTCAGTCGGGAGCGCAATCCACCCATCGACCTGATGATCGGCCATG
GTATTGTGCCCATTTGCATACGCTTCCTGCAGAATACCAACAACTCAATG
CTGCAGTTCGAGGCCGCTTGGGCGCTTACCAACATCGCCTCTGGCACATC
CGACCAAACGCGCTGCGTTATCGAACACAATGCTGTGCCGCATTTCGTGG
CTCTGCTCCAGTCCAAGTCCATGAACCTGGCCGAGCAGGCAGTCTGGGCT
CTGGGCAACATTGCCGGCGACGGAGCCGCCGCCCGCGACATTGTCATCCA
CCACAACGTAATTGACGGAATCTTGCCACTGATCAACAATGAGACACCGC
TCTCTTTTCTGCGCAACATCGTCTGGCTGATGTCCAACCTGTGCCGGAAC
AAGAATCCATCGCCGCCATTCGATCAGGTGAAGCGGCTGTTGCCCGTCCT
GTCGCAGCTTCTGCTTAGTCAGGACATCCAAGTGCTGGCCGACGCCTGCT
GGGCTTTGTCCTACGTCACGGACGACGATAACACCAAGATCCAGGCTGTG
GTCGACTCGGACGCAGTGCCGCGCCTGGTCAAACTGCTGCAAATGGACGA
GCCGAGCATTATTGTGCCCGCCCTGCGCAGCGTTGGCAACATTGTGACTG
GCACAGATCAACAGACTGACGTTGTAATTGCATCTGGAGGTTTACCAAGG
CTGGGACTCCTTCTACAGCACAACAAAAGCAACATTGTGAAGGAGGCTGC
CTGGACGGTCAGCAACATCACAGCAGGTAACCAGAAGCAGATCCAGGCTG
TGATTCAGGCCGGCATCTTCCAGCAGCTGCGCACCGTGCTGGAGAAGGGT
GATTTCAAGGCTCAAAAAGAGGCTGCCTGGGCGGTGACAAACACCACGAC
ATCTGGCACTCCCGAACAGATCGTCGATCTAATTGAGAAGTACAAAATAT
TGAAGCCTTTTATCGATTTGCTGGACACAAAGGATCCGCGTACCATCAAG
GTGGTGCAGACGGGCCTATCCAATCTGTTTGCCCTGGCGGAGAAACTTGG
TGGCACCGAGAACCTATGCTTGATGGTCGAGGAGATGGGCGGTCTAGACA
AGCTGGAAACTCTGCAGCAGCACGAGAACGAGGAGGTCTACAAGAAGGCC
TACGCCATCATTGACACATACTTCAGCAACGGCGACGACGAGGCCGAGCA
AGAGCTCGCACCTCAGGAGGTCAACGGAGCCCTCGAGTTCAATGCCACCC
AGCCCAAGGCTCCCGAAGGTGGCTACACGTTCTAAAAGCTTTCTAGACCA
T

BS15384.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:26:43
Subject Length Description Subject Range Query Range Score Percent Strand
Pen-RA 1569 CG4799-PA 1..1569 17..1585 7845 100 Plus
Kap-alpha3-RD 1545 CG9423-PD 371..425 396..450 200 90.9 Plus
Kap-alpha3-RC 1545 CG9423-PC 371..425 396..450 200 90.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:44
Subject Length Description Subject Range Query Range Score Percent Strand
Pen-RA 2577 CG4799-RA 381..1949 17..1585 7845 100 Plus
Kap-alpha3-RD 2261 CG9423-RD 577..631 396..450 200 90.9 Plus
Kap-alpha3-RC 2663 CG9423-RC 499..553 396..450 200 90.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10058845..10059467 963..1585 3115 100 Plus
2L 23513712 2L 10058195..10058769 390..964 2860 99.8 Plus
2L 23513712 2L 10057819..10058134 78..393 1580 100 Plus
2L 23513712 2L 10057697..10057760 17..80 320 100 Plus
3R 32079331 3R 9576784..9576838 450..396 200 90.9 Minus
Blast to na_te.dros performed on 2014-11-28 01:26:43 has no hits.

BS15384.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-31 08:53:32 Download gff for BS15384.complete
Subject Subject Range Query Range Percent Splice Strand
Pen-RA 375..1941 17..1583 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:47:48 Download gff for BS15384.complete
Subject Subject Range Query Range Percent Splice Strand
Pen-RA 381..1947 17..1583 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:48:44 Download gff for BS15384.complete
Subject Subject Range Query Range Percent Splice Strand
Pen-RA 381..1947 17..1583 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:48:44 Download gff for BS15384.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10057697..10057759 17..79 100 -> Plus
2L 10057821..10058134 80..393 100 -> Plus
2L 10058199..10058769 394..964 100 -> Plus
2L 10058847..10059465 965..1583 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:47:48 Download gff for BS15384.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10057697..10057759 17..79 100 -> Plus
arm_2L 10057821..10058134 80..393 100 -> Plus
arm_2L 10058199..10058769 394..964 100 -> Plus
arm_2L 10058847..10059465 965..1583 100   Plus

BS15384.3prime Sequence

757 bp (742 high quality bases) assembled on 2006-10-24

> BS15384.3prime
ATGGTCTAGAAAGCTTTTAGAACGTGTAGCCACCTTCGGGAGCCTTGGGC
TGGGTGGCATTGAACTCGAGGGCTCCGTTGACCTCCTGAGGTGCGAGCTC
TTGCTCGGCCTCGTCGTCGCCGTTGCTGAAGTATGTGTCAATGATGGCGT
AGGCCTTCTTGTAGACCTCCTCGTTCTCGTGCTGCTGCAGAGTTTCCAGC
TTGTCTAGACCGCCCATCTCCTCGACCATCAAGCATAGGTTCTCGGTGCC
ACCAAGTTTCTCCGCCAGGGCAAACAGATTGGATAGGCCCGTCTGCACCA
CCTTGATGGTACGCGGATCCTTTGTGTCCAGCAAATCGATAAAAGGCTTC
AATATTTTGTACTTCTCAATTAGATCGACGATCTGTTCGGGAGTGCCAGA
TGTCGTGGTGTTTGTCACCGCCCAGGCAGCCTCTTTTTGAGCCTTGAAAT
CACCCTTCTCCAGCACGGTGCGCAGCTGCTGGAAGATGCCGGCCTGAATC
ACAGCCTGGATCTGCTTCTGGTTACCTGCTGTGATGTTGCTGACCGTCCA
GGCAGCCTCCTTCACAATGTTGCTTTTGTTGTGCTGTAGAAGGAGTCCCA
GCCTTGGTAAACCTCCAGATGCAATTACAACGTCAGTCTGTTGATCTGTG
CCAGTCACAATGTTGCCAACGCTGCGCAGGGCGGGCACAATAATGCTCGG
CTCGTCCATTTGCAGCAGTTTGACCAGGCGCGGCACTGCGTCCGAGTCGA
CCACAGC

BS15384.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:19:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG4799-PA 1569 Pen-RA 829..1569 757..17 3705 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:58:29
Subject Length Description Subject Range Query Range Score Percent Strand
Pen-RA 2577 CG4799-RA 1209..1949 757..17 3705 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:58:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10058845..10059467 639..17 3115 100 Minus
2L 23513712 2L 10058650..10058769 757..638 600 100 Minus
Blast to na_te.dros performed on 2015-02-12 05:58:25 has no hits.

BS15384.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:25:27 Download gff for BS15384.3prime
Subject Subject Range Query Range Percent Splice Strand
Pen-PA 829..1569 17..757 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:01:44 Download gff for BS15384.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4799-PA 829..1569 17..757 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 06:30:51 Download gff for BS15384.3prime
Subject Subject Range Query Range Percent Splice Strand
Pen-RA 1209..1953 13..757 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:58:33 Download gff for BS15384.3prime
Subject Subject Range Query Range Percent Splice Strand
Pen-RA 1209..1953 13..757 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:58:33 Download gff for BS15384.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10058650..10058769 638..757 100 -> Minus
2L 10058847..10059471 13..637 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 06:30:51 Download gff for BS15384.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10058650..10058769 638..757 100 -> Minus
arm_2L 10058847..10059471 13..637 99   Minus

BS15384.5prime Sequence

768 bp (701 high quality bases) assembled on 2006-10-24

> BS15384.5prime
GAAGTTATCATTCGACATGAGTAAGGCGGATTCTAACTCACGACAGGGCT
CCTACAAGGCCAACAGCATTAACACGCAGGACTCACGCATGCGCCGCCAT
GAGGTGACCATCGAGCTGCGCAAGTCCAAAAAGGAGGACCAGATGTTCAA
GCGGCGCAACATCAACGACGAGGATCTAACGTCGCCGCTCAAAGAGCTCA
ATGGCCAGTCGCCGGTGCAGCTGTCCGTGGACGAGATAGTGGCGGCCATG
AACAGCGAGGATCAGGAGCGCCAGTTTCTGGGCATGCAGTCTGCCCGCAA
GATGCTCAGTCGGGAGCGCAATCCACCCATCGACCTGATGATCGGCCATG
GTATTGTGCCCATTTGCATACGCTTCCTGCAGAATACCAACAACTCAATG
CTGCAGTTCGAGGCCGCTTGGGCGCTTACCAACATCGCCTCTGGCACATC
CGACCAAACGCGCTGCGTTATCGAACACAATGCTGTGCCGCATTTCGTGG
CTCTGCTCCAGTCCAAGTCCATGAACCTGGCCGAGCAGGCAGTCTGGGCT
CTGGGCAACATTGCCGGCGACGGAGCCGCCGCCCGCGACATTGTCATCCA
CCACAACGTAATTGACGGAATCTTGCCACTGATCAACAATGAGACACCGC
TCTCTTTTCTGCGCAACATCGTCTGGCTGATGTCCAACCTGTGCCGGAAC
AAGAATCCATCGCCGCCATTCGATCAGGTGAAGCGGCTGTTGCCCGTCCT
GTCGCAGCTTCTGCTTAG

BS15384.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:19:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG4799-PA 1569 Pen-RA 1..752 17..768 3760 100 Plus
CG9423-PA 1545 Kap-alpha3-RA 371..425 396..450 150 90.9 Plus
CG9423-PB 1545 Kap-alpha3-RB 371..425 396..450 150 90.9 Plus
CG9423-PC 1545 Kap-alpha3-RC 371..425 396..450 150 90.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:08:27
Subject Length Description Subject Range Query Range Score Percent Strand
Pen-RA 2577 CG4799-RA 381..1132 17..768 3760 100 Plus
Kap-alpha3-RD 2261 CG9423-RD 577..631 396..450 200 90.9 Plus
Kap-alpha3-RC 2663 CG9423-RC 499..553 396..450 200 90.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:08:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10058195..10058573 390..768 1880 99.7 Plus
2L 23513712 2L 10057819..10058134 78..393 1580 100 Plus
2L 23513712 2L 10057697..10057760 17..80 320 100 Plus
3R 32079331 3R 9576784..9576838 450..396 200 90.9 Minus
Blast to na_te.dros performed on 2015-02-12 16:08:26 has no hits.

BS15384.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:25:28 Download gff for BS15384.5prime
Subject Subject Range Query Range Percent Splice Strand
Pen-PA 1..752 17..768 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:01:46 Download gff for BS15384.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4799-PA 1..752 17..768 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:24:49 Download gff for BS15384.5prime
Subject Subject Range Query Range Percent Splice Strand
Pen-RA 381..1132 17..768 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:44:55 Download gff for BS15384.5prime
Subject Subject Range Query Range Percent Splice Strand
Pen-RA 381..1132 17..768 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:44:55 Download gff for BS15384.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10057821..10058134 80..393 100 -> Plus
2L 10057697..10057759 17..79 100 -> Plus
2L 10058199..10058573 394..768 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:24:49 Download gff for BS15384.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10057697..10057759 17..79 100 -> Plus
arm_2L 10057821..10058134 80..393 100 -> Plus
arm_2L 10058199..10058573 394..768 100   Plus

BS15384.pep Sequence

Translation from 16 to 1584

> BS15384.pep
MSKADSNSRQGSYKANSINTQDSRMRRHEVTIELRKSKKEDQMFKRRNIN
DEDLTSPLKELNGQSPVQLSVDEIVAAMNSEDQERQFLGMQSARKMLSRE
RNPPIDLMIGHGIVPICIRFLQNTNNSMLQFEAAWALTNIASGTSDQTRC
VIEHNAVPHFVALLQSKSMNLAEQAVWALGNIAGDGAAARDIVIHHNVID
GILPLINNETPLSFLRNIVWLMSNLCRNKNPSPPFDQVKRLLPVLSQLLL
SQDIQVLADACWALSYVTDDDNTKIQAVVDSDAVPRLVKLLQMDEPSIIV
PALRSVGNIVTGTDQQTDVVIASGGLPRLGLLLQHNKSNIVKEAAWTVSN
ITAGNQKQIQAVIQAGIFQQLRTVLEKGDFKAQKEAAWAVTNTTTSGTPE
QIVDLIEKYKILKPFIDLLDTKDPRTIKVVQTGLSNLFALAEKLGGTENL
CLMVEEMGGLDKLETLQQHENEEVYKKAYAIIDTYFSNGDDEAEQELAPQ
EVNGALEFNATQPKAPEGGYTF*

BS15384.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:29:22
Subject Length Description Subject Range Query Range Score Percent Strand
Pen-PA 522 CG4799-PA 1..522 1..522 2654 100 Plus
Kap-alpha3-PD 514 CG9423-PD 1..514 1..522 1089 44.7 Plus
Kap-alpha3-PC 514 CG9423-PC 1..514 1..522 1089 44.7 Plus
Kap-alpha3-PB 514 CG9423-PB 1..514 1..522 1089 44.7 Plus
Kap-alpha3-PA 514 CG9423-PA 1..514 1..522 1089 44.7 Plus