Clone BS15389 Report

Search the DGRC for BS15389

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:153
Well:89
Vector:pDNR-Dual
Associated Gene/Transcriptcbx-RA
Protein status:BS15389.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15389.3prime Sequence

675 bp (675 high quality bases) assembled on 2006-10-24

> BS15389.3prime
ATGGTCTAGAAAGCTTTTACTCAATGCTAAGTGGCTTAAACTCGCCCTCC
TTAACCCATGACAGACCAGTTGCATGTCCACCATTTGCTTGTTGCGCTGA
AGGCTCCGTCAGCTTGCTTCTTCCGGCCTTGATGCGCTCCAGAACGGGCC
CGTGCACGTCCTGCTGGAACTTCTCGAATACTATGTAGTGCGGATCTTCG
GTGGGTGGGGTGTCAAATATATGCTCCTTGCTCTCCTTGATATTTTCCTG
TACGCGAGCAACATACTCCTCCTTGTTATTCATCAGCAGCTCCGCAGCCT
CGCTGTTTTTGAGCTTATCTACCTCAATGCCCCGAATACTGTCCAAGGGA
TCGGAGAAAATGACTTGCAGGTACTTTAAAAGCTGCCAAAGGTGATCCTC
TCCACAGCGCCACTCCGGGAAGGCGTGGCTCACGTCCAAACTGTGGGTGT
ACGGGCACACATGGGGATGAATCACATCCTGCTGGAAAATTATGCTCGGA
AGACTTTTGTCGTCGGGAAAACGATCTGGGAGCAAAATTGTGAATCGAAA
AACACTTTCCGCATACAAGCCCTGTCGGCCAAAGAAGACTCCAAACCACT
GCAAGGAGTTAGCATAGCTGGGTATCACATATATCCCACTCAACTTCTCC
GACTCAATCATGTCGACTGATAACT

BS15389.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:19:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG10536-PA 645 cbx-RA 1..645 661..17 3225 100 Minus
CG10536-PB 735 cbx-RB 91..735 661..17 3225 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:13:16
Subject Length Description Subject Range Query Range Score Percent Strand
cbx-RB 908 CG10536-RB 184..830 661..15 3235 100 Minus
cbx-RA 1036 CG10536-RA 312..958 661..15 3235 100 Minus
cbx-RC 766 CG10536-RC 135..456 661..322 1420 94.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:13:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9864588..9865070 15..497 2415 100 Plus
2R 25286936 2R 9865124..9865227 497..600 520 100 Plus
2R 25286936 2R 9865290..9865350 601..661 305 100 Plus
Blast to na_te.dros performed on 2015-02-13 01:13:13 has no hits.

BS15389.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:25:32 Download gff for BS15389.3prime
Subject Subject Range Query Range Percent Splice Strand
cbx-PB 91..735 17..661 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:01:52 Download gff for BS15389.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10536-PB 91..735 17..661 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:25:27 Download gff for BS15389.3prime
Subject Subject Range Query Range Percent Splice Strand
cbx-RA 312..966 7..661 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:06:33 Download gff for BS15389.3prime
Subject Subject Range Query Range Percent Splice Strand
cbx-RA 312..966 7..661 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:06:33 Download gff for BS15389.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9864580..9865069 7..496 99 <- Plus
2R 9865124..9865227 497..600 100 <- Plus
2R 9865290..9865361 601..674 93   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:25:27 Download gff for BS15389.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5752085..5752574 7..496 99 <- Plus
arm_2R 5752629..5752732 497..600 100 <- Plus
arm_2R 5752795..5752866 601..674 93   Plus

BS15389.5prime Sequence

675 bp (675 high quality bases) assembled on 2006-10-24

> BS15389.5prime
GAAGTTACCATTCGACATGATTGAGTCGGAGAAGTTGAGTGGGATATATG
TGATACCCAGCTATGCTAACTCCTTGCAGTGGTTTGGAGTCTTCTTTGGC
CGACAGGGCTTGTATGCGGAAAGTGTTTTTCGATTCACAATTTTGCTCCC
AGATCGTTTTCCCGACGACAAAAGTCTTCCGAGCATAATTTTCCAGCAGG
ATGTGATTCATCCCCATGTGTGCCCGTACACCCACAGTTTGGACGTGAGC
CACGCCTTCCCGGAGTGGCGCTGTGGAGAGGATCACCTTTGGCAGCTTTT
AAAGTACCTGCAAGTCATTTTCTCCGATCCCTTGGACAGTATTCGGGGCA
TTGAGGTAGATAAGCTCAAAAACAGCGAGGCTGCGGAGCTGCTGATGAAT
AACAAGGAGGAGTATGTTGCTCGCGTACAGGAAAATATCAAGGAGAGCAA
GGAGCATATATTTGACACCCCACCCACCGAAGATCCGCACTACATAGTAT
TCGAGAAGTTCCAGCAGGACGTGCACGGGCCCGTTCTGGAGCGCATCAAG
GCCGGAAGAAGCAAGCTGACGGAGCCTTCAGCGCAACAAGCAAATGGTGG
ACATGCAACTGGTCTGTCATGGGTTAAGGAGGGCGAGTTTAAGCCACTTA
ACATTGAGTAAAAGCTTTCTAGACC

BS15389.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:19:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG10536-PA 645 cbx-RA 1..645 17..661 3200 99.8 Plus
CG10536-PB 735 cbx-RB 91..735 17..661 3200 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:28:47
Subject Length Description Subject Range Query Range Score Percent Strand
cbx-RB 908 CG10536-RB 184..830 17..663 3220 99.8 Plus
cbx-RA 1036 CG10536-RA 312..958 17..663 3220 99.8 Plus
cbx-RC 766 CG10536-RC 135..456 17..356 1420 94.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:28:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9864588..9865070 663..181 2400 99.8 Minus
2R 25286936 2R 9865124..9865227 181..78 520 100 Minus
2R 25286936 2R 9865290..9865350 77..17 305 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:28:43 has no hits.

BS15389.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:25:33 Download gff for BS15389.5prime
Subject Subject Range Query Range Percent Splice Strand
cbx-PB 84..735 10..661 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:01:53 Download gff for BS15389.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10536-PB 84..735 10..661 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:40:25 Download gff for BS15389.5prime
Subject Subject Range Query Range Percent Splice Strand
cbx-RA 305..966 10..671 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:32:14 Download gff for BS15389.5prime
Subject Subject Range Query Range Percent Splice Strand
cbx-RA 305..966 10..671 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:32:14 Download gff for BS15389.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9864580..9865069 182..671 98 <- Minus
2R 9865124..9865227 78..181 100 <- Minus
2R 9865290..9865350 17..77 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:40:25 Download gff for BS15389.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5752085..5752574 182..671 98 <- Minus
arm_2R 5752629..5752732 78..181 100 <- Minus
arm_2R 5752795..5752855 17..77 100   Minus

BS15389.complete Sequence

677 bp assembled on 2006-11-01

GenBank Submission: FJ637929

> BS15389.complete
GAAGTTATCAGTCGACATGATTGAGTCGGAGAAGTTGAGTGGGATATATG
TGATACCCAGCTATGCTAACTCCTTGCAGTGGTTTGGAGTCTTCTTTGGC
CGACAGGGCTTGTATGCGGAAAGTGTTTTTCGATTCACAATTTTGCTCCC
AGATCGTTTTCCCGACGACAAAAGTCTTCCGAGCATAATTTTCCAGCAGG
ATGTGATTCATCCCCATGTGTGCCCGTACACCCACAGTTTGGACGTGAGC
CACGCCTTCCCGGAGTGGCGCTGTGGAGAGGATCACCTTTGGCAGCTTTT
AAAGTACCTGCAAGTCATTTTCTCCGATCCCTTGGACAGTATTCGGGGCA
TTGAGGTAGATAAGCTCAAAAACAGCGAGGCTGCGGAGCTGCTGATGAAT
AACAAGGAGGAGTATGTTGCTCGCGTACAGGAAAATATCAAGGAGAGCAA
GGAGCATATATTTGACACCCCACCCACCGAAGATCCGCACTACATAGTAT
TCGAGAAGTTCCAGCAGGACGTGCACGGGCCCGTTCTGGAGCGCATCAAG
GCCGGAAGAAGCAAGCTGACGGAGCCTTCAGCGCAACAAGCAAATGGTGG
ACATGCAACTGGTCTGTCATGGGTTAAGGAGGGCGAGTTTAAGCCACTTA
GCATTGAGTAAAAGCTTTCTAGACCAT

BS15389.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:57:38
Subject Length Description Subject Range Query Range Score Percent Strand
cbx-RB 735 CG10536-PB 91..735 17..661 3225 100 Plus
cbx-RA 645 CG10536-PA 1..645 17..661 3225 100 Plus
cbx-RC 552 CG10536-PC 1..322 17..356 1395 94.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:57:39
Subject Length Description Subject Range Query Range Score Percent Strand
cbx-RB 908 CG10536-RB 184..830 17..663 3235 100 Plus
cbx-RA 1036 CG10536-RA 312..958 17..663 3235 100 Plus
cbx-RC 766 CG10536-RC 135..456 17..356 1395 94.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:57:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9864588..9865070 663..181 2415 100 Minus
2R 25286936 2R 9865124..9865227 181..78 520 100 Minus
2R 25286936 2R 9865290..9865350 77..17 305 100 Minus
Blast to na_te.dros performed on 2014-11-27 23:57:37 has no hits.

BS15389.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:32:41 Download gff for BS15389.complete
Subject Subject Range Query Range Percent Splice Strand
cbx-RB 91..735 17..661 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:05:10 Download gff for BS15389.complete
Subject Subject Range Query Range Percent Splice Strand
cbx-RB 165..819 17..671 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:42:24 Download gff for BS15389.complete
Subject Subject Range Query Range Percent Splice Strand
cbx-RA 312..954 17..659 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:32:41 Download gff for BS15389.complete
Subject Subject Range Query Range Percent Splice Strand
cbx-RB 165..819 17..671 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:11:41 Download gff for BS15389.complete
Subject Subject Range Query Range Percent Splice Strand
cbx-RA 312..954 17..659 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:11:41 Download gff for BS15389.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9864592..9865069 182..659 100 <- Minus
2R 9865124..9865227 78..181 100 <- Minus
2R 9865290..9865350 17..77 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:42:24 Download gff for BS15389.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5752097..5752574 182..659 100 <- Minus
arm_2R 5752629..5752732 78..181 100 <- Minus
arm_2R 5752795..5752855 17..77 100   Minus

BS15389.pep Sequence

Translation from 16 to 660

> BS15389.pep
MIESEKLSGIYVIPSYANSLQWFGVFFGRQGLYAESVFRFTILLPDRFPD
DKSLPSIIFQQDVIHPHVCPYTHSLDVSHAFPEWRCGEDHLWQLLKYLQV
IFSDPLDSIRGIEVDKLKNSEAAELLMNNKEEYVARVQENIKESKEHIFD
TPPTEDPHYIVFEKFQQDVHGPVLERIKAGRSKLTEPSAQQANGGHATGL
SWVKEGEFKPLSIE*

BS15389.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:23:18
Subject Length Description Subject Range Query Range Score Percent Strand
cbx-PA 214 CG10536-PA 1..214 1..214 1139 100 Plus
cbx-PB 244 CG10536-PB 31..244 1..214 1139 100 Plus
cbx-PC 183 CG10536-PC 1..183 1..214 937 85.5 Plus
CG16894-PA 266 CG16894-PA 29..211 5..179 457 45.4 Plus