Clone Sequence Records
BS15389.3prime Sequence
675 bp (675 high quality bases) assembled on 2006-10-24
> BS15389.3prime
ATGGTCTAGAAAGCTTTTACTCAATGCTAAGTGGCTTAAACTCGCCCTCC
TTAACCCATGACAGACCAGTTGCATGTCCACCATTTGCTTGTTGCGCTGA
AGGCTCCGTCAGCTTGCTTCTTCCGGCCTTGATGCGCTCCAGAACGGGCC
CGTGCACGTCCTGCTGGAACTTCTCGAATACTATGTAGTGCGGATCTTCG
GTGGGTGGGGTGTCAAATATATGCTCCTTGCTCTCCTTGATATTTTCCTG
TACGCGAGCAACATACTCCTCCTTGTTATTCATCAGCAGCTCCGCAGCCT
CGCTGTTTTTGAGCTTATCTACCTCAATGCCCCGAATACTGTCCAAGGGA
TCGGAGAAAATGACTTGCAGGTACTTTAAAAGCTGCCAAAGGTGATCCTC
TCCACAGCGCCACTCCGGGAAGGCGTGGCTCACGTCCAAACTGTGGGTGT
ACGGGCACACATGGGGATGAATCACATCCTGCTGGAAAATTATGCTCGGA
AGACTTTTGTCGTCGGGAAAACGATCTGGGAGCAAAATTGTGAATCGAAA
AACACTTTCCGCATACAAGCCCTGTCGGCCAAAGAAGACTCCAAACCACT
GCAAGGAGTTAGCATAGCTGGGTATCACATATATCCCACTCAACTTCTCC
GACTCAATCATGTCGACTGATAACT
BS15389.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:19:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10536-PA | 645 | cbx-RA | 1..645 | 661..17 | 3225 | 100 | Minus |
CG10536-PB | 735 | cbx-RB | 91..735 | 661..17 | 3225 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:13:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cbx-RB | 908 | CG10536-RB | 184..830 | 661..15 | 3235 | 100 | Minus |
cbx-RA | 1036 | CG10536-RA | 312..958 | 661..15 | 3235 | 100 | Minus |
cbx-RC | 766 | CG10536-RC | 135..456 | 661..322 | 1420 | 94.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:13:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9864588..9865070 | 15..497 | 2415 | 100 | Plus |
2R | 25286936 | 2R | 9865124..9865227 | 497..600 | 520 | 100 | Plus |
2R | 25286936 | 2R | 9865290..9865350 | 601..661 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:13:13 has no hits.
BS15389.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:25:32 Download gff for
BS15389.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbx-PB | 91..735 | 17..661 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:01:52 Download gff for
BS15389.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10536-PB | 91..735 | 17..661 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:25:27 Download gff for
BS15389.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbx-RA | 312..966 | 7..661 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:06:33 Download gff for
BS15389.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbx-RA | 312..966 | 7..661 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:06:33 Download gff for
BS15389.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9864580..9865069 | 7..496 | 99 | <- | Plus |
2R | 9865124..9865227 | 497..600 | 100 | <- | Plus |
2R | 9865290..9865361 | 601..674 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:25:27 Download gff for
BS15389.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5752085..5752574 | 7..496 | 99 | <- | Plus |
arm_2R | 5752629..5752732 | 497..600 | 100 | <- | Plus |
arm_2R | 5752795..5752866 | 601..674 | 93 | | Plus |
BS15389.5prime Sequence
675 bp (675 high quality bases) assembled on 2006-10-24
> BS15389.5prime
GAAGTTACCATTCGACATGATTGAGTCGGAGAAGTTGAGTGGGATATATG
TGATACCCAGCTATGCTAACTCCTTGCAGTGGTTTGGAGTCTTCTTTGGC
CGACAGGGCTTGTATGCGGAAAGTGTTTTTCGATTCACAATTTTGCTCCC
AGATCGTTTTCCCGACGACAAAAGTCTTCCGAGCATAATTTTCCAGCAGG
ATGTGATTCATCCCCATGTGTGCCCGTACACCCACAGTTTGGACGTGAGC
CACGCCTTCCCGGAGTGGCGCTGTGGAGAGGATCACCTTTGGCAGCTTTT
AAAGTACCTGCAAGTCATTTTCTCCGATCCCTTGGACAGTATTCGGGGCA
TTGAGGTAGATAAGCTCAAAAACAGCGAGGCTGCGGAGCTGCTGATGAAT
AACAAGGAGGAGTATGTTGCTCGCGTACAGGAAAATATCAAGGAGAGCAA
GGAGCATATATTTGACACCCCACCCACCGAAGATCCGCACTACATAGTAT
TCGAGAAGTTCCAGCAGGACGTGCACGGGCCCGTTCTGGAGCGCATCAAG
GCCGGAAGAAGCAAGCTGACGGAGCCTTCAGCGCAACAAGCAAATGGTGG
ACATGCAACTGGTCTGTCATGGGTTAAGGAGGGCGAGTTTAAGCCACTTA
ACATTGAGTAAAAGCTTTCTAGACC
BS15389.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:19:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10536-PA | 645 | cbx-RA | 1..645 | 17..661 | 3200 | 99.8 | Plus |
CG10536-PB | 735 | cbx-RB | 91..735 | 17..661 | 3200 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:28:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cbx-RB | 908 | CG10536-RB | 184..830 | 17..663 | 3220 | 99.8 | Plus |
cbx-RA | 1036 | CG10536-RA | 312..958 | 17..663 | 3220 | 99.8 | Plus |
cbx-RC | 766 | CG10536-RC | 135..456 | 17..356 | 1420 | 94.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:28:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9864588..9865070 | 663..181 | 2400 | 99.8 | Minus |
2R | 25286936 | 2R | 9865124..9865227 | 181..78 | 520 | 100 | Minus |
2R | 25286936 | 2R | 9865290..9865350 | 77..17 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:28:43 has no hits.
BS15389.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:25:33 Download gff for
BS15389.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbx-PB | 84..735 | 10..661 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:01:53 Download gff for
BS15389.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10536-PB | 84..735 | 10..661 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:40:25 Download gff for
BS15389.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbx-RA | 305..966 | 10..671 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:32:14 Download gff for
BS15389.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbx-RA | 305..966 | 10..671 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:32:14 Download gff for
BS15389.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9864580..9865069 | 182..671 | 98 | <- | Minus |
2R | 9865124..9865227 | 78..181 | 100 | <- | Minus |
2R | 9865290..9865350 | 17..77 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:40:25 Download gff for
BS15389.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5752085..5752574 | 182..671 | 98 | <- | Minus |
arm_2R | 5752629..5752732 | 78..181 | 100 | <- | Minus |
arm_2R | 5752795..5752855 | 17..77 | 100 | | Minus |
BS15389.complete Sequence
677 bp assembled on 2006-11-01
GenBank Submission: FJ637929
> BS15389.complete
GAAGTTATCAGTCGACATGATTGAGTCGGAGAAGTTGAGTGGGATATATG
TGATACCCAGCTATGCTAACTCCTTGCAGTGGTTTGGAGTCTTCTTTGGC
CGACAGGGCTTGTATGCGGAAAGTGTTTTTCGATTCACAATTTTGCTCCC
AGATCGTTTTCCCGACGACAAAAGTCTTCCGAGCATAATTTTCCAGCAGG
ATGTGATTCATCCCCATGTGTGCCCGTACACCCACAGTTTGGACGTGAGC
CACGCCTTCCCGGAGTGGCGCTGTGGAGAGGATCACCTTTGGCAGCTTTT
AAAGTACCTGCAAGTCATTTTCTCCGATCCCTTGGACAGTATTCGGGGCA
TTGAGGTAGATAAGCTCAAAAACAGCGAGGCTGCGGAGCTGCTGATGAAT
AACAAGGAGGAGTATGTTGCTCGCGTACAGGAAAATATCAAGGAGAGCAA
GGAGCATATATTTGACACCCCACCCACCGAAGATCCGCACTACATAGTAT
TCGAGAAGTTCCAGCAGGACGTGCACGGGCCCGTTCTGGAGCGCATCAAG
GCCGGAAGAAGCAAGCTGACGGAGCCTTCAGCGCAACAAGCAAATGGTGG
ACATGCAACTGGTCTGTCATGGGTTAAGGAGGGCGAGTTTAAGCCACTTA
GCATTGAGTAAAAGCTTTCTAGACCAT
BS15389.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:57:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cbx-RB | 735 | CG10536-PB | 91..735 | 17..661 | 3225 | 100 | Plus |
cbx-RA | 645 | CG10536-PA | 1..645 | 17..661 | 3225 | 100 | Plus |
cbx-RC | 552 | CG10536-PC | 1..322 | 17..356 | 1395 | 94.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:57:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cbx-RB | 908 | CG10536-RB | 184..830 | 17..663 | 3235 | 100 | Plus |
cbx-RA | 1036 | CG10536-RA | 312..958 | 17..663 | 3235 | 100 | Plus |
cbx-RC | 766 | CG10536-RC | 135..456 | 17..356 | 1395 | 94.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:57:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9864588..9865070 | 663..181 | 2415 | 100 | Minus |
2R | 25286936 | 2R | 9865124..9865227 | 181..78 | 520 | 100 | Minus |
2R | 25286936 | 2R | 9865290..9865350 | 77..17 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:57:37 has no hits.
BS15389.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:32:41 Download gff for
BS15389.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbx-RB | 91..735 | 17..661 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:05:10 Download gff for
BS15389.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbx-RB | 165..819 | 17..671 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:42:24 Download gff for
BS15389.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbx-RA | 312..954 | 17..659 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:32:41 Download gff for
BS15389.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbx-RB | 165..819 | 17..671 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:11:41 Download gff for
BS15389.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbx-RA | 312..954 | 17..659 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:11:41 Download gff for
BS15389.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9864592..9865069 | 182..659 | 100 | <- | Minus |
2R | 9865124..9865227 | 78..181 | 100 | <- | Minus |
2R | 9865290..9865350 | 17..77 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:42:24 Download gff for
BS15389.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5752097..5752574 | 182..659 | 100 | <- | Minus |
arm_2R | 5752629..5752732 | 78..181 | 100 | <- | Minus |
arm_2R | 5752795..5752855 | 17..77 | 100 | | Minus |
BS15389.pep Sequence
Translation from 16 to 660
> BS15389.pep
MIESEKLSGIYVIPSYANSLQWFGVFFGRQGLYAESVFRFTILLPDRFPD
DKSLPSIIFQQDVIHPHVCPYTHSLDVSHAFPEWRCGEDHLWQLLKYLQV
IFSDPLDSIRGIEVDKLKNSEAAELLMNNKEEYVARVQENIKESKEHIFD
TPPTEDPHYIVFEKFQQDVHGPVLERIKAGRSKLTEPSAQQANGGHATGL
SWVKEGEFKPLSIE*
BS15389.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:23:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cbx-PA | 214 | CG10536-PA | 1..214 | 1..214 | 1139 | 100 | Plus |
cbx-PB | 244 | CG10536-PB | 31..244 | 1..214 | 1139 | 100 | Plus |
cbx-PC | 183 | CG10536-PC | 1..183 | 1..214 | 937 | 85.5 | Plus |
CG16894-PA | 266 | CG16894-PA | 29..211 | 5..179 | 457 | 45.4 | Plus |