Clone BS15395 Report

Search the DGRC for BS15395

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:153
Well:95
Vector:pDNR-Dual
Associated Gene/TranscriptCG1971-RB
Protein status:BS15395.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15395.3prime Sequence

669 bp (669 high quality bases) assembled on 2006-10-24

> BS15395.3prime
ATGGTCTAGAAAGCTTTTACCGATCGGCCCTTATATCCGCCCCCGATTCG
TTATTGGACCGCTCCGGCTGCTCTACCTCGCTGTCTATGTCCCCCTCGTA
GCCCGAATTTGTTTTCGAGGCAACGGGAAGGGGATTGTGCCCTTTAGACA
GGAAGGACTCGTCCAAGGTGCAGCAGCTACAAAAGCACTCCTTAAAATGA
CGGCAGGTATCCCCAAGTTTCTCGGGGGCCGCCTCTAAGACCTTGTTGAA
TGCTTCGATCTTCTCGCGCAGGCTGCGGCTGGCACTGGGACACCCAAAGA
GCTGACTTCCTTGTGGAGACGGCCGTGAAGATTCGCTGCCAATCTTCTCT
AGAAAGCCGAGAACCTTCTCCAGTGAGTCTCGGGCACGTTTGAAGTTCTC
CTGGCTCTCCCGCAGAACTTGGCTTTCATTGAGGTGCTCAAATTCCACCA
ATAGACCTTGAATCTCGGTGAGGTCAGAAGGCAAACTCATGCCCGCCACG
GCGGAGGTTTGCGGGGCGTTCACAGCATTAACCGTCTCGAAACCCACGAT
CAGTCGCTGTATCTTGGAGGCCCCGGCGCGGTGGCCACACCTCGCGAGCT
GCATCATGTCGTTCACATCGCCCACCTCCTTGAGCAACTGCACCGACGAC
TGCATGTCGACTGATAACT

BS15395.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:20:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG1971-PA 792 CG1971-RA 154..792 655..17 3195 100 Minus
CG1971-PB 639 CG1971-RB 1..639 655..17 3195 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:55:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG1971-RD 1028 CG1971-RD 133..773 655..15 3205 100 Minus
CG1971-RC 1034 CG1971-RC 139..779 655..15 3205 100 Minus
CG1971-RB 1106 CG1971-RB 211..851 655..15 3205 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:55:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31805874..31806514 655..15 3205 100 Minus
Blast to na_te.dros performed on 2015-02-13 05:55:35 has no hits.

BS15395.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:25:45 Download gff for BS15395.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1971-PB 1..639 17..655 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:02:09 Download gff for BS15395.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1971-PB 1..639 17..655 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:54:34 Download gff for BS15395.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1971-RA 277..928 7..661 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:58:26 Download gff for BS15395.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1971-RB 208..859 7..661 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:58:26 Download gff for BS15395.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 31805871..31806522 7..661 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:54:34 Download gff for BS15395.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27631593..27632244 7..661 98   Minus

BS15395.5prime Sequence

669 bp (669 high quality bases) assembled on 2006-10-24

> BS15395.5prime
GAAGTTATCAGTCGACATGCAGTCGTCGGTGCAGTTGCTCAAGGAGGTGG
GCGATGTGAACGACATGATGCAGCTCGCGAGGTGTGGCCACCGCGCCGGG
GCCTCCAAGATACAGCGACTGATCGTGGGTTTCGAGACGGTTAATGCTGT
GAACGCCCCGCAAACCTCCGCCGTGGCGGGCATGAGTTTGCCTTCTGACC
TCACCGAGATTCAAGGTCTATTGGTGGAATTTGAGCACCTCAATGAAAGC
CAAGTTCTGCGGGAGAGCCAGGAGAACTTCAAACGTGCCCGAGACTCACT
GGAGAAGGTTCTCGGCTTTCTAGAGAAGATTGGCAGCGAATCTTCACGGC
CGTCTCCACAAGGAAGTCAGCTCTTTGGGTGTCCCAGTGCCAGCCGCAGC
CTGCGCGAGAAGATCGAAGCATTCAACAAGGTCTTAGAGGCGGCCCCCGA
GAAACTTGGGGATACCTGCCGTCATTTTAAGGAGTGCTTTTGTAGCTGCT
GCACCTTGGACGAGTCCTTCCTGTCTAAAGGGCACAATCCCCTTCCCGTT
GCCTCGAAAACAAATTCGGGCTACGAGGGGGACATAGACAGCGAGGTAGA
GCAGCCGGAGCGGTCCAATAACGAATCGGGGGCGGATATAAGGGCCGATC
GGTAAAAGCTTTCTAGACC

BS15395.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:20:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG1971-PA 792 CG1971-RA 154..792 17..655 3195 100 Plus
CG1971-PB 639 CG1971-RB 1..639 17..655 3195 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:41:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG1971-RD 1028 CG1971-RD 133..773 17..657 3205 100 Plus
CG1971-RC 1034 CG1971-RC 139..779 17..657 3205 100 Plus
CG1971-RB 1106 CG1971-RB 211..851 17..657 3205 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:41:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31805874..31806514 17..657 3205 100 Plus
Blast to na_te.dros performed on 2015-02-11 04:41:23 has no hits.

BS15395.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:25:46 Download gff for BS15395.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1971-PB 1..639 17..655 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:02:10 Download gff for BS15395.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1971-PB 1..639 17..655 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:38:59 Download gff for BS15395.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1971-RA 277..928 11..665 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:17:15 Download gff for BS15395.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1971-RB 208..859 11..665 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:17:15 Download gff for BS15395.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 31805871..31806522 11..665 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:38:59 Download gff for BS15395.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27631593..27632244 11..665 98   Plus

BS15395.complete Sequence

671 bp assembled on 2006-11-01

GenBank Submission: FJ637930

> BS15395.complete
GAAGTTATCAGTCGACATGCAGTCGTCGGTGCAGTTGCTCAAGGAGGTGG
GCGATGTGAACGACATGATGCAGCTCGCGAGGTGTGGCCACCGCGCCGGG
GCCTCCAAGATACAGCGACTGATCGTGGGTTTCGAGACGGTTAATGCTGT
GAACGCCCCGCAAACCTCCGCCGTGGCGGGCATGAGTTTGCCTTCTGACC
TCACCGAGATTCAAGGTCTATTGGTGGAATTTGAGCACCTCAATGAAAGC
CAAGTTCTGCGGGAGAGCCAGGAGAACTTCAAACGTGCCCGAGACTCACT
GGAGAAGGTTCTCGGCTTTCTAGAGAAGATTGGCAGCGAATCTTCACGGC
CGTCTCCACAAGGAAGTCAGCTCTTTGGGTGTCCCAGTGCCAGCCGCAGC
CTGCGCGAGAAGATCGAAGCATTCAACAAGGTCTTAGAGGCGGCCCCCGA
GAAACTTGGGGATACCTGCCGTCATTTTAAGGAGTGCTTTTGTAGCTGCT
GCACCTTGGACGAGTCCTTCCTGTCTAAAGGGCACAATCCCCTTCCCGTT
GCCTCGAAAACAAATTCGGGCTACGAGGGGGACATAGACAGCGAGGTAGA
GCAGCCGGAGCGGTCCAATAACGAATCGGGGGCGGATATAAGGGCCGATC
GGTAAAAGCTTTCTAGACCAT

BS15395.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:49:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG1971-RD 639 CG1971-PD 1..639 17..655 3195 100 Plus
CG1971-RC 639 CG1971-PC 1..639 17..655 3195 100 Plus
CG1971-RB 639 CG1971-PB 1..639 17..655 3195 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:49:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG1971-RD 1028 CG1971-RD 133..773 17..657 3205 100 Plus
CG1971-RC 1034 CG1971-RC 139..779 17..657 3205 100 Plus
CG1971-RB 1106 CG1971-RB 211..851 17..657 3205 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:49:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31805874..31806514 17..657 3205 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:49:03 has no hits.

BS15395.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:32:42 Download gff for BS15395.complete
Subject Subject Range Query Range Percent Splice Strand
CG1971-RB 1..639 17..655 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:05:12 Download gff for BS15395.complete
Subject Subject Range Query Range Percent Splice Strand
CG1971-RB 136..787 11..665 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:58:07 Download gff for BS15395.complete
Subject Subject Range Query Range Percent Splice Strand
CG1971-RA 280..916 17..653 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:32:43 Download gff for BS15395.complete
Subject Subject Range Query Range Percent Splice Strand
CG1971-RB 136..787 11..665 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:20:54 Download gff for BS15395.complete
Subject Subject Range Query Range Percent Splice Strand
CG1971-RB 211..847 17..653 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:20:54 Download gff for BS15395.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31805874..31806510 17..653 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:58:07 Download gff for BS15395.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27631596..27632232 17..653 100   Plus

BS15395.pep Sequence

Translation from 16 to 654

> BS15395.pep
MQSSVQLLKEVGDVNDMMQLARCGHRAGASKIQRLIVGFETVNAVNAPQT
SAVAGMSLPSDLTEIQGLLVEFEHLNESQVLRESQENFKRARDSLEKVLG
FLEKIGSESSRPSPQGSQLFGCPSASRSLREKIEAFNKVLEAAPEKLGDT
CRHFKECFCSCCTLDESFLSKGHNPLPVASKTNSGYEGDIDSEVEQPERS
NNESGADIRADR*

BS15395.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:31:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG1971-PD 212 CG1971-PD 1..212 1..212 1084 100 Plus
CG1971-PC 212 CG1971-PC 1..212 1..212 1084 100 Plus
CG1971-PB 212 CG1971-PB 1..212 1..212 1084 100 Plus
CG1971-PA 263 CG1971-PA 52..263 1..212 1084 100 Plus