Clone Sequence Records
BS15395.3prime Sequence
669 bp (669 high quality bases) assembled on 2006-10-24
> BS15395.3prime
ATGGTCTAGAAAGCTTTTACCGATCGGCCCTTATATCCGCCCCCGATTCG
TTATTGGACCGCTCCGGCTGCTCTACCTCGCTGTCTATGTCCCCCTCGTA
GCCCGAATTTGTTTTCGAGGCAACGGGAAGGGGATTGTGCCCTTTAGACA
GGAAGGACTCGTCCAAGGTGCAGCAGCTACAAAAGCACTCCTTAAAATGA
CGGCAGGTATCCCCAAGTTTCTCGGGGGCCGCCTCTAAGACCTTGTTGAA
TGCTTCGATCTTCTCGCGCAGGCTGCGGCTGGCACTGGGACACCCAAAGA
GCTGACTTCCTTGTGGAGACGGCCGTGAAGATTCGCTGCCAATCTTCTCT
AGAAAGCCGAGAACCTTCTCCAGTGAGTCTCGGGCACGTTTGAAGTTCTC
CTGGCTCTCCCGCAGAACTTGGCTTTCATTGAGGTGCTCAAATTCCACCA
ATAGACCTTGAATCTCGGTGAGGTCAGAAGGCAAACTCATGCCCGCCACG
GCGGAGGTTTGCGGGGCGTTCACAGCATTAACCGTCTCGAAACCCACGAT
CAGTCGCTGTATCTTGGAGGCCCCGGCGCGGTGGCCACACCTCGCGAGCT
GCATCATGTCGTTCACATCGCCCACCTCCTTGAGCAACTGCACCGACGAC
TGCATGTCGACTGATAACT
BS15395.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:20:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1971-PA | 792 | CG1971-RA | 154..792 | 655..17 | 3195 | 100 | Minus |
CG1971-PB | 639 | CG1971-RB | 1..639 | 655..17 | 3195 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:55:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1971-RD | 1028 | CG1971-RD | 133..773 | 655..15 | 3205 | 100 | Minus |
CG1971-RC | 1034 | CG1971-RC | 139..779 | 655..15 | 3205 | 100 | Minus |
CG1971-RB | 1106 | CG1971-RB | 211..851 | 655..15 | 3205 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:55:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31805874..31806514 | 655..15 | 3205 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:55:35 has no hits.
BS15395.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:25:45 Download gff for
BS15395.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1971-PB | 1..639 | 17..655 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:02:09 Download gff for
BS15395.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1971-PB | 1..639 | 17..655 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:54:34 Download gff for
BS15395.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1971-RA | 277..928 | 7..661 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:58:26 Download gff for
BS15395.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1971-RB | 208..859 | 7..661 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:58:26 Download gff for
BS15395.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31805871..31806522 | 7..661 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:54:34 Download gff for
BS15395.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27631593..27632244 | 7..661 | 98 | | Minus |
BS15395.5prime Sequence
669 bp (669 high quality bases) assembled on 2006-10-24
> BS15395.5prime
GAAGTTATCAGTCGACATGCAGTCGTCGGTGCAGTTGCTCAAGGAGGTGG
GCGATGTGAACGACATGATGCAGCTCGCGAGGTGTGGCCACCGCGCCGGG
GCCTCCAAGATACAGCGACTGATCGTGGGTTTCGAGACGGTTAATGCTGT
GAACGCCCCGCAAACCTCCGCCGTGGCGGGCATGAGTTTGCCTTCTGACC
TCACCGAGATTCAAGGTCTATTGGTGGAATTTGAGCACCTCAATGAAAGC
CAAGTTCTGCGGGAGAGCCAGGAGAACTTCAAACGTGCCCGAGACTCACT
GGAGAAGGTTCTCGGCTTTCTAGAGAAGATTGGCAGCGAATCTTCACGGC
CGTCTCCACAAGGAAGTCAGCTCTTTGGGTGTCCCAGTGCCAGCCGCAGC
CTGCGCGAGAAGATCGAAGCATTCAACAAGGTCTTAGAGGCGGCCCCCGA
GAAACTTGGGGATACCTGCCGTCATTTTAAGGAGTGCTTTTGTAGCTGCT
GCACCTTGGACGAGTCCTTCCTGTCTAAAGGGCACAATCCCCTTCCCGTT
GCCTCGAAAACAAATTCGGGCTACGAGGGGGACATAGACAGCGAGGTAGA
GCAGCCGGAGCGGTCCAATAACGAATCGGGGGCGGATATAAGGGCCGATC
GGTAAAAGCTTTCTAGACC
BS15395.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:20:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1971-PA | 792 | CG1971-RA | 154..792 | 17..655 | 3195 | 100 | Plus |
CG1971-PB | 639 | CG1971-RB | 1..639 | 17..655 | 3195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:41:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1971-RD | 1028 | CG1971-RD | 133..773 | 17..657 | 3205 | 100 | Plus |
CG1971-RC | 1034 | CG1971-RC | 139..779 | 17..657 | 3205 | 100 | Plus |
CG1971-RB | 1106 | CG1971-RB | 211..851 | 17..657 | 3205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:41:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31805874..31806514 | 17..657 | 3205 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:41:23 has no hits.
BS15395.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:25:46 Download gff for
BS15395.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1971-PB | 1..639 | 17..655 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:02:10 Download gff for
BS15395.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1971-PB | 1..639 | 17..655 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:38:59 Download gff for
BS15395.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1971-RA | 277..928 | 11..665 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:17:15 Download gff for
BS15395.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1971-RB | 208..859 | 11..665 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:17:15 Download gff for
BS15395.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31805871..31806522 | 11..665 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:38:59 Download gff for
BS15395.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27631593..27632244 | 11..665 | 98 | | Plus |
BS15395.complete Sequence
671 bp assembled on 2006-11-01
GenBank Submission: FJ637930
> BS15395.complete
GAAGTTATCAGTCGACATGCAGTCGTCGGTGCAGTTGCTCAAGGAGGTGG
GCGATGTGAACGACATGATGCAGCTCGCGAGGTGTGGCCACCGCGCCGGG
GCCTCCAAGATACAGCGACTGATCGTGGGTTTCGAGACGGTTAATGCTGT
GAACGCCCCGCAAACCTCCGCCGTGGCGGGCATGAGTTTGCCTTCTGACC
TCACCGAGATTCAAGGTCTATTGGTGGAATTTGAGCACCTCAATGAAAGC
CAAGTTCTGCGGGAGAGCCAGGAGAACTTCAAACGTGCCCGAGACTCACT
GGAGAAGGTTCTCGGCTTTCTAGAGAAGATTGGCAGCGAATCTTCACGGC
CGTCTCCACAAGGAAGTCAGCTCTTTGGGTGTCCCAGTGCCAGCCGCAGC
CTGCGCGAGAAGATCGAAGCATTCAACAAGGTCTTAGAGGCGGCCCCCGA
GAAACTTGGGGATACCTGCCGTCATTTTAAGGAGTGCTTTTGTAGCTGCT
GCACCTTGGACGAGTCCTTCCTGTCTAAAGGGCACAATCCCCTTCCCGTT
GCCTCGAAAACAAATTCGGGCTACGAGGGGGACATAGACAGCGAGGTAGA
GCAGCCGGAGCGGTCCAATAACGAATCGGGGGCGGATATAAGGGCCGATC
GGTAAAAGCTTTCTAGACCAT
BS15395.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:49:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1971-RD | 639 | CG1971-PD | 1..639 | 17..655 | 3195 | 100 | Plus |
CG1971-RC | 639 | CG1971-PC | 1..639 | 17..655 | 3195 | 100 | Plus |
CG1971-RB | 639 | CG1971-PB | 1..639 | 17..655 | 3195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:49:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1971-RD | 1028 | CG1971-RD | 133..773 | 17..657 | 3205 | 100 | Plus |
CG1971-RC | 1034 | CG1971-RC | 139..779 | 17..657 | 3205 | 100 | Plus |
CG1971-RB | 1106 | CG1971-RB | 211..851 | 17..657 | 3205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:49:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31805874..31806514 | 17..657 | 3205 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:49:03 has no hits.
BS15395.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:32:42 Download gff for
BS15395.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1971-RB | 1..639 | 17..655 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:05:12 Download gff for
BS15395.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1971-RB | 136..787 | 11..665 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:58:07 Download gff for
BS15395.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1971-RA | 280..916 | 17..653 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:32:43 Download gff for
BS15395.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1971-RB | 136..787 | 11..665 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:20:54 Download gff for
BS15395.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1971-RB | 211..847 | 17..653 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:20:54 Download gff for
BS15395.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31805874..31806510 | 17..653 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:58:07 Download gff for
BS15395.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27631596..27632232 | 17..653 | 100 | | Plus |
BS15395.pep Sequence
Translation from 16 to 654
> BS15395.pep
MQSSVQLLKEVGDVNDMMQLARCGHRAGASKIQRLIVGFETVNAVNAPQT
SAVAGMSLPSDLTEIQGLLVEFEHLNESQVLRESQENFKRARDSLEKVLG
FLEKIGSESSRPSPQGSQLFGCPSASRSLREKIEAFNKVLEAAPEKLGDT
CRHFKECFCSCCTLDESFLSKGHNPLPVASKTNSGYEGDIDSEVEQPERS
NNESGADIRADR*
BS15395.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:31:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1971-PD | 212 | CG1971-PD | 1..212 | 1..212 | 1084 | 100 | Plus |
CG1971-PC | 212 | CG1971-PC | 1..212 | 1..212 | 1084 | 100 | Plus |
CG1971-PB | 212 | CG1971-PB | 1..212 | 1..212 | 1084 | 100 | Plus |
CG1971-PA | 263 | CG1971-PA | 52..263 | 1..212 | 1084 | 100 | Plus |