Clone Sequence Records
BS15404.3prime Sequence
888 bp (789 high quality bases) assembled on 2006-12-21
> BS15404.3prime
ATGGTCTAGAAAGCTTTTATTTCTTCTGGAATGATGCATTGATCGCCTGC
ATCTCTGCGGCGGTGAACTGGAGCACCGCCGAGATGGCGTTCAGCATGTG
ACGCTTGCCGTCCGCGTCCCGGGTAACAATGTAGCTGATAATAACGTTCT
TCAGGTACTCCAGATTGGCACCCTCGCGCGTCTTGCAACGTTCGAGTCTG
TCCACCTGCTCCTTGAGGCACTCGATCTTCTCGTGCATTTCCTGCTGAGA
TGTCACCTTGTCCTGGATCGCCTTTCGCAGCGTCGACTCGGCGGCGTATT
TGGCTTTCCGCAGTGTCGTGATTTCGATGTCCTTGCGCGCCAACTCGTTG
GCATAGTGCAGCATGTGGCAGTTCTCGCCCATCGACATTTTCTTGGAGCG
CACCTTTAGCTTTCTTTCCCGCTGCTCCCCCTCCACGCTGTCGGTGTCGG
AGGAATAGTGAAAGGAATCGGCAGCTGCTTCAAGTGTGGGTGTGGCCAGT
GTGCTGCCCACACCGCTGGCCGAGTGAAAGACCTCGAAGGAGGTCTGCAG
TGTCTTAATCTCCTGCTCCTTCTCATCCAGCAGCTGCAGTGACCTCTGGC
GCTGCTTCTGCAGTAGCTGTTCCAGCTCGTTCAGTTTGCAGCGCGTCTCG
TTCTCCAGTTCAGCCTTGGCTTCCTGCCACTTGGTTCGTTCGTTCTTCAA
TGCCAGGCGCAGCTTTTCGCCCTGCTGCTTTAGTTCGACTTCCGCCTCGT
CGATGTTGCGATTGAGCACCTGCACCTTCTCCTGCAGCGTTTGGATGTGC
GAGTGCTGCAGCTGCACTTTCTGTTCGAGTAGCTGTCGCTGCTGCTTGGA
TGCCTCGAGCATTTGCTGCACACCCTGAAGCTGTTGCT
BS15404.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:20:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10703-PA | 2088 | CG10703-RA | 1217..2088 | 888..17 | 4335 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:39:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GCC88-RA | 2322 | CG10703-RA | 1368..2239 | 888..17 | 4345 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:39:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11228490..11229180 | 198..888 | 3440 | 99.9 | Plus |
| 3R | 32079331 | 3R | 11228241..11228423 | 17..199 | 915 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 11:39:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| flea | 5034 | flea DMBLPP 5034bp Derived from Z27119 (g415797) (Rel. 50, Last updated, Version 6). | 4409..4513 | 783..678 | 139 | 63.9 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1065..1141 | 636..560 | 133 | 63.6 | Minus |
BS15404.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:25:55 Download gff for
BS15404.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10703-PA | 1217..2088 | 17..888 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:02:21 Download gff for
BS15404.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10703-PA | 1217..2088 | 17..888 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 23:19:34 Download gff for
BS15404.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10703-RA | 1368..2243 | 11..888 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:55:28 Download gff for
BS15404.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GCC88-RA | 1368..2243 | 11..888 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:55:28 Download gff for
BS15404.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11228237..11228421 | 11..197 | 98 | <- | Plus |
| 3R | 11228490..11229180 | 198..888 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 23:19:34 Download gff for
BS15404.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7053959..7054143 | 11..197 | 98 | <- | Plus |
| arm_3R | 7054212..7054902 | 198..888 | 99 | | Plus |
BS15404.5prime Sequence
889 bp (716 high quality bases) assembled on 2006-12-21
> BS15404.5prime
GAAGTTATCAGTCGACATGGAGAAGCGACAGAGGGAGCTGGAGGCGCTGG
TGTCCACCCAAAAGGAGCAACTGGGGCGCTATGAAAAGCGTCTAAAAGAC
GTGGTCACTGCCTACAAGGGTCTGCTTAAGGAGAAGGAGGCATTGGAGAC
GAGTCTGGCGGCGCATGCGGAGGCCACGGCGGTGGGCGAGTCCGGATCGC
CGGCCAGGGAGTTGGAGTCCAAAAAAACCAGCACCGACTCTGCGGATGGA
GCAACCGAGGGCGCTGCACCGGGTCCGCCTGCTCCCCCGGCCGAGGGTCA
ACTGCAGACCCAAATTATCACCCTGATGAACTCGCTGGCCACTCTTTCCG
CTGAGAAATCCCGCATGGAGGCCTCCTTTCAGGCGGATAAAAAGCAACTG
CGCAGCCAAATCGCCCAAAAGGAGCAGACCATTCAGGAGCTTAATACCCG
GGCCAAGGAGCAGGCTGCTCGGGCCAAAAGCGACGTGGACGAGATCAAGG
CCAAGTGGATCGTGGAGCGACAGGAGCGCGAGAAAGAGACCAACAACCAA
ATGCTCATGATCCGCGAACTGCAGAAACTCTATGCGGACGAGCGGCATCT
AAAGGACAACATTGAGATGCAGTTAAACAACTTCAAGACCCAGTTCGCCA
GCAACGAGGCAGAGAATAGCCGGCTACGGGAATTGCAATCCCAGCTAAAG
GAGGCTCGCTCCCAGCTGAAACAGTTCCAGGCCAAGACCGAGCACTCTGC
AGCAGCGTCAGCGAGTGCGGACAGCGCCGCTCTCCTTCAGCAAGTGCGCC
TTGAGATGCAGCAACTGAAGGAGCAGCATGCAGTGGGCATTCGTCAGGAA
CAGCGTCGCGTGCTGCGTGCCGAGGAACAGAGTCGCAGG
BS15404.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:20:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10703-PA | 2088 | CG10703-RA | 1..873 | 17..889 | 4340 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:58:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GCC88-RA | 2322 | CG10703-RA | 148..1024 | 13..889 | 4355 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:58:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11229524..11230316 | 889..97 | 3950 | 99.9 | Minus |
| 3R | 32079331 | 3R | 11230368..11230453 | 98..13 | 415 | 98.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:58:19 has no hits.
BS15404.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:25:56 Download gff for
BS15404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10703-PA | 1..873 | 17..889 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:02:23 Download gff for
BS15404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10703-PA | 1..873 | 17..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 23:31:33 Download gff for
BS15404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10703-RA | 140..1024 | 5..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:43:01 Download gff for
BS15404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GCC88-RA | 140..1024 | 5..889 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:43:01 Download gff for
BS15404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11229524..11230314 | 99..889 | 99 | <- | Minus |
| 3R | 11230368..11230461 | 5..98 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 23:31:33 Download gff for
BS15404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7055246..7056036 | 99..889 | 99 | <- | Minus |
| arm_3R | 7056090..7056183 | 5..98 | 95 | | Minus |
BS15404.complete Sequence
2120 bp assembled on 2009-12-07
GenBank Submission: KX803453
> BS15404.complete
GAAGTTATCAGTCGACATGGAGAAGCGACAGAGGGAGCTGGAGGCGCTGG
TGTCCACCCAAAAGGAGCAACTGGGGCGCTATGAAAAGCGTCTAAAAGAC
GTGGTCACTGCCTACAAGGGTCTGCTTAAGGAGAAGGAGGCATTGGAGAC
GAGTCTGGCGGCGCATGCGGAGGCCACGGCGGTGGGCGAGTCCGGATCGC
CGGCCAGGGAGTTGGAGTCCAAAAAAACCAGCACCGACTCTGCGGATGGA
GCAACCGAGGGCGCTGCACCGGGTCCGCCTGCTCCCCCGGCCGAGGGTCA
ACTGCAGACCCAAATTATCACCCTGATGAACTCGCTGGCCACTCTTTCCG
CTGAGAAATCCCGCATGGAGGCCTCCTTTCAGGCGGATAAAAAGCAACTG
CGCAGCCAAATCGCCCAAAAGGAGCAGACCATTCAGGAGCTTAATACCCG
GGCCAAGGAGCAGGCTGCTCGGGCCAAAAGCGACGTGGACGAGATCAAGG
CCAAGTGGATCGTGGAGCGACAGGAGCGCGAGAAAGAGACCAACAACCAA
ATGCTCATGATCCGCGAACTGCAGAAACTCTATGCGGACGAGCGGCATCT
AAAGGACAACATTGAGATGCAGTTAAACAACTTCAAGACCCAGTTCGCCA
GCAACGAGGCAGAGAATAGCCGGCTACGGGAATTGCAATCCCAGCTAAAG
GAGGCTCGCTCCCAGCTGAAACAGTTCCAGGCCAAGACCGAGCACTCTGC
AGCAGCGTCAGCGAGTGCGGACAGCGCCGCTCTCCTTCAGCAAGTGCGCC
TTGAGATGCAGCAACTGAAGGAGCAGCATGCAGTGGCCATTCGTCAGGAA
CAGCGTCGCGTGCTGCGTGCCGAGGAACAGAGTCGCAGGCAGGCGGCGCT
GCACGAGGATCGCGTGGCCAGTCTAGAGGCACGCCTGGCGGAGCTCAGCA
CCACTGTCGGCAGCTACGACCGCCTGCGTCAGCAAGATCAGGACAGCATC
CATGATTTGAAGCAGCAGCTGCAGGATCTAGAGCAGGCACATGTGCGTCC
AACATCCAATTCAAGGGCGCTAAACGAAGATGTGGACGTAGCCACGCTGG
TTGACGAGATGGTGCGCTTGAAGAAACTGCTTACCACAGCCAATGCCCGT
TCTGCCAATCCACTGGATCTCGGGGAGATCCTATCATTTAGCGGCCAAAC
AGCTACCCGAGTCGAGAGTCACGCCCACTGCGAGCAACAGCTTCAGGGTG
TGCAGCAAATGCTCGAGGCATCCAAGCAGCAGCGACAGCTACTCGAACAG
AAGGTGCAGCTGCAGCACTCGCACATCCAAACGCTGCAGGAGAAGGTGCA
GGTGCTCAATCGCAACATCGACGAGGCGGAAGTCGAACTAAAGCAGCAGG
GCGAAAAGCTGCGCCTGGCATTGAAGAACGAACGAACCAAGTGGCAGGAA
GCCAAGGCTGAACTGGAGAACGAGACGCGCTGCAAACTGAACGAGCTGGA
ACAGCTACTGCAGAAGCAGCGCCAGAGGTCACTGCAGCTGCTGGATGAGA
AGGAGCAGGAGATTAAGACACTGCAGACCTCCTTCGAGGTCTTTCACTCG
GCCAGCGGTGTGGGCAGCACACTGGCCACACCCACACTTGAAGCAGCTGC
CGATTCCTTTCACTATTCCTCCGACACCGACAGCGTGGAGGGGGAGCAGC
GGGAAAGAAAGCTAAAGGTGCGCTCCAAGAAAATGTCGATGGGCGAGAAC
TGCCACATGCTGCACTATGCCAACGAGTTGGCGCGCAAGGACATCGAAAT
CACGACACTGCGGAAAGCCAAATACGCCGCCGAGTCGACGCTGCGAAAGG
CGATCCAGGACAAGGTGACATCTCAGCAGGAAATGCACGAGAAGATCGAG
TGCCTCAAGGAGCAGGTGGACAGACTCGAACGTTGCAAGACGCGCGAGGG
TGCCAATCTGGAGTACCTGAAGAACGTTATTATCAGCTACATTGTTACCC
GGGACGCGGACGGCAAGCGTCACATGCTGAACGCCATCTCGGCGGTGCTC
CAGTTCACCGCCGCAGAGATGCAGGCGATCAATGCATCATTCCAGAAGAA
ATAAAAGCTTTCTAGACCAT
BS15404.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:29:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GCC88-RA | 2088 | CG10703-PA | 1..2088 | 17..2104 | 10440 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:29:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GCC88-RA | 2322 | CG10703-RA | 148..2239 | 13..2104 | 10445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:29:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11228490..11230316 | 1923..97 | 9135 | 100 | Minus |
| 3R | 32079331 | 3R | 11228241..11228423 | 2104..1922 | 915 | 100 | Minus |
| 3R | 32079331 | 3R | 11230368..11230453 | 98..13 | 415 | 98.8 | Minus |
Blast to na_te.dros performed 2014-11-28 02:29:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| flea | 5034 | flea DMBLPP 5034bp Derived from Z27119 (g415797) (Rel. 50, Last updated, Version 6). | 4409..4513 | 1338..1443 | 139 | 63.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1065..1141 | 1485..1561 | 133 | 63.6 | Plus |
BS15404.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:50:40 Download gff for
BS15404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10703-RA | 120..2198 | 17..2095 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:15:30 Download gff for
BS15404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10703-RA | 152..2230 | 17..2095 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:03:24 Download gff for
BS15404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10703-RA | 120..2198 | 17..2095 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:12:38 Download gff for
BS15404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GCC88-RA | 152..2230 | 17..2095 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:12:38 Download gff for
BS15404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11228250..11228421 | 1924..2095 | 100 | <- | Minus |
| 3R | 11228490..11230314 | 99..1923 | 100 | <- | Minus |
| 3R | 11230368..11230449 | 17..98 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:15:30 Download gff for
BS15404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7053972..7054143 | 1924..2095 | 100 | <- | Minus |
| arm_3R | 7054212..7056036 | 99..1923 | 100 | <- | Minus |
| arm_3R | 7056090..7056171 | 17..98 | 100 | | Minus |
BS15404.pep Sequence
Translation from 16 to 2103
> BS15404.pep
MEKRQRELEALVSTQKEQLGRYEKRLKDVVTAYKGLLKEKEALETSLAAH
AEATAVGESGSPARELESKKTSTDSADGATEGAAPGPPAPPAEGQLQTQI
ITLMNSLATLSAEKSRMEASFQADKKQLRSQIAQKEQTIQELNTRAKEQA
ARAKSDVDEIKAKWIVERQEREKETNNQMLMIRELQKLYADERHLKDNIE
MQLNNFKTQFASNEAENSRLRELQSQLKEARSQLKQFQAKTEHSAAASAS
ADSAALLQQVRLEMQQLKEQHAVAIRQEQRRVLRAEEQSRRQAALHEDRV
ASLEARLAELSTTVGSYDRLRQQDQDSIHDLKQQLQDLEQAHVRPTSNSR
ALNEDVDVATLVDEMVRLKKLLTTANARSANPLDLGEILSFSGQTATRVE
SHAHCEQQLQGVQQMLEASKQQRQLLEQKVQLQHSHIQTLQEKVQVLNRN
IDEAEVELKQQGEKLRLALKNERTKWQEAKAELENETRCKLNELEQLLQK
QRQRSLQLLDEKEQEIKTLQTSFEVFHSASGVGSTLATPTLEAAADSFHY
SSDTDSVEGEQRERKLKVRSKKMSMGENCHMLHYANELARKDIEITTLRK
AKYAAESTLRKAIQDKVTSQQEMHEKIECLKEQVDRLERCKTREGANLEY
LKNVIISYIVTRDADGKRHMLNAISAVLQFTAAEMQAINASFQKK*
BS15404.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:14:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GCC88-PA | 695 | CG10703-PA | 1..695 | 1..695 | 3417 | 100 | Plus |
| CLIP-190-PN | 1598 | CG5020-PN | 671..1347 | 2..648 | 238 | 20.3 | Plus |
| CLIP-190-PR | 1601 | CG5020-PR | 674..1350 | 2..648 | 238 | 20.3 | Plus |
| CLIP-190-PP | 1623 | CG5020-PP | 696..1372 | 2..648 | 238 | 20.3 | Plus |
| CLIP-190-PC | 1652 | CG5020-PC | 725..1401 | 2..648 | 238 | 20.3 | Plus |
| CLIP-190-PR | 1601 | CG5020-PR | 262..839 | 101..691 | 232 | 21.3 | Plus |
| CLIP-190-PN | 1598 | CG5020-PN | 237..836 | 101..691 | 224 | 21.1 | Plus |
| CLIP-190-PP | 1623 | CG5020-PP | 262..861 | 101..691 | 224 | 21.1 | Plus |
| CLIP-190-PN | 1598 | CG5020-PN | 906..1506 | 9..638 | 185 | 20.4 | Plus |
| CLIP-190-PR | 1601 | CG5020-PR | 909..1509 | 9..638 | 185 | 20.4 | Plus |
| CLIP-190-PP | 1623 | CG5020-PP | 931..1531 | 9..638 | 185 | 20.4 | Plus |
