Clone BS15405 Report

Search the DGRC for BS15405

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:154
Well:5
Vector:pDNR-Dual
Associated Gene/TranscriptCG8078-RA
Protein status:BS15405.pep: full length peptide match
Sequenced Size:1064

Clone Sequence Records

BS15405.complete Sequence

1064 bp assembled on 2010-02-09

GenBank Submission: KX801321

> BS15405.complete
GAAGTTATCACTCGACATGCACATTATCTGCAAGTCGCAGTGCGGAAATC
GCGCTGCTTTGAAGCGACCCAAAACCGGCGATGCCCTGTGCAAGGAGTGC
TTCTTCGCAGCCTTCGAGGCAGAGATCCATCACACAATCTCCTCCAGCAA
CTTGTTCCGACGTGGCGAGAAGGTGGCCGTAGCGGCCAGTGGAGGCAAGG
ACTCCACGGTCCTAGCGCACGTATTAAAACTGCTAAACGAACGCCATAAC
TACGGTCTGGAACTGGTGCTCCTTTCCATAGACGAAGGCATCACTGGATA
TCGGGATGACAGTTTGGAGACAGTGAAACAGAACCGTGACGACTACCAGA
TGCCACTAAAGATCCTGTCCTACGAGGAGCTCTACGGCTGGACCATGGAC
CGCATTGTTGCCCAGATCGGCCGTTCTAACAACTGCACATTTTGCGGCGT
CTTCCGCCGACAGGCCTTGGATAGAGGGGCCAAGCTGTTGGGCGTTGATA
GCATAGCCACAGGCCACAATGCAGATGACATTGCGGAGACTGTCTTGATG
AACGTGCTCCGTGGGGACACGGCGCGCCTGCGACGCTGCACGAGCATCCG
CACCGGCGGGGGCGAGGATACCATTCCCCGAGTGAAGCCCCTCAAGTACA
GCTACGAGAAAGAAATCGTGATGTACGCCCACTACAAAAAGCTGGTCTAC
TTCTCAACGGAGTGCGTATTCGCCCCCAATGCGTATCGCGGCCACGCTCG
AGCGTTTCTCAAGGATTTGGAGAAAGTGCGACCATCGGTTATAATGGACA
TCATCTACTCTGGCGAACAGCTTCGCTTCAAGGACACGGTAAAGAAGCCC
GAGCGTGGCACATGCACCCGATGTGGCTTCGTTTCCTCACAGCAGCCGTG
CAAGGCGTGCGTCCTTCTCGAGGGTCTAAATAGAGGATTGCCGAAGCTGG
GCATAGGCAAGAAGTCGAAGGGCGAGCGAATGATTGCCAAGCAGAACCAG
GAACTAGCATTGCGGGAGCGAGCAAACTTAGTAAAAAACGATTTTTAAAA
GCTTTCTAGACCAT

BS15405.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:30:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG8078-RA 1032 CG8078-PA 1..1032 17..1048 5160 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:30:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG8078-RA 1487 CG8078-RA 76..1107 17..1048 5160 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:30:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9097311..9098136 1048..223 4130 100 Minus
2R 25286936 2R 9098189..9098349 222..62 805 100 Minus
2R 25286936 2R 9098403..9098450 64..17 240 100 Minus
Blast to na_te.dros performed on 2014-11-28 04:30:57 has no hits.

BS15405.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:11:53 Download gff for BS15405.complete
Subject Subject Range Query Range Percent Splice Strand
CG8078-RA 18..1047 17..1046 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:00:53 Download gff for BS15405.complete
Subject Subject Range Query Range Percent Splice Strand
CG8078-RA 76..1105 17..1046 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:06:17 Download gff for BS15405.complete
Subject Subject Range Query Range Percent Splice Strand
CG8078-RA 18..1047 17..1046 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:30:42 Download gff for BS15405.complete
Subject Subject Range Query Range Percent Splice Strand
CG8078-RA 76..1105 17..1046 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:30:42 Download gff for BS15405.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9098189..9098346 65..222 100 <- Minus
2R 9098403..9098450 17..64 100   Minus
2R 9097313..9098136 223..1046 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:00:53 Download gff for BS15405.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4984818..4985641 223..1046 100 <- Minus
arm_2R 4985694..4985851 65..222 100 <- Minus
arm_2R 4985908..4985955 17..64 100   Minus

BS15405.3prime Sequence

909 bp (799 high quality bases) assembled on 2006-12-21

> BS15405.3prime
ATGGTCTAGAAAGCTTTTAAAAATCGTTTTTTACTAAGTTTGCTCGCTCC
CGCAATGCTAGTTCCTGGTTCTGCTTGGCAATCATTCGCTCGCCCTTCGA
CTTCTTGCCTATGCCCAGCTTCGGCAATCCTCTATTTAGACCCTCGAGAA
GGACGCACGCCTTGCACGGCTGCTGTGAGGAAACGAAGCCACATCGGGTG
CATGTGCCACGCTCGGGCTTCTTTACCGTGTCCTTGAAGCGAAGCTGTTC
GCCAGAGTAGATGATGTCCATTATAACCGATGGTCGCACTTTCTCCAAAT
CCTTGAGAAACGCTCGAGCGTGGCCGCGATACGCATTGGGGGCGAATACG
CACTCCGTTGAGAAGTAGACCAGCTTTTTGTAGTGGGCGTACATCACGAT
TTCTTTCTCGTAGCTGTACTTGAGGGGCTTCACTCGGGGAATGGTATCCT
CGCCCCCGCCGGTGCGGATGCTCGTGCAGCGTCGCAGGCGCGCCGTGTCC
CCACGGAGCACGTTCATCAAGACAGTCTCCGCAATGTCATCTGCATTGTG
GCCTGTGGCTATGCTATCAACGCCCAACAGCTTGGCCCCTCTATCCAAGG
CCTGTCGGCGGAAGACGCCGCAAAATGTGCAGTTGTTAGAACGGCCGATC
TGGGCAACAATGCGGTCCATGGTCCAGCCGTAGAGCTCCTCGTAGGACAG
GATCTTTAGTGGCATCTGGTAGTCGTCACGGTTCTGTTTCACTGTCTCCA
AACTGTCATCCCGATATCCAGTGATGCCTTCGTCTATGGAAAGGAGCACC
AGTTCCAGACCGTAGTTATGGCGTTCGTTTAGCAGTTTTAATACGTGCGC
TAGGACCGTGGAGTCCTTGCCTCCACTGGCCGCTACGGCCACCTTTCTCG
CACGTCGGA

BS15405.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:20:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG8078-PA 1032 CG8078-RA 154..1032 895..17 4395 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:58:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG8078-RA 1487 CG8078-RA 215..1107 909..17 4420 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:58:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9097311..9098136 17..842 4130 100 Plus
2R 25286936 2R 9098189..9098241 843..895 265 100 Plus
Blast to na_te.dros performed on 2015-02-10 23:58:50 has no hits.

BS15405.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:25:57 Download gff for BS15405.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8078-PA 141..1032 17..908 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:02:24 Download gff for BS15405.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8078-PA 141..1032 17..908 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 16:37:37 Download gff for BS15405.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8078-RA 216..1107 17..908 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:15:35 Download gff for BS15405.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8078-RA 216..1107 17..908 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 02:15:35 Download gff for BS15405.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9098189..9098254 843..908 97   Plus
2R 9097311..9098136 17..842 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 16:37:37 Download gff for BS15405.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4984816..4985641 17..842 100 <- Plus
arm_2R 4985694..4985759 843..908 97   Plus

BS15405.5prime Sequence

855 bp (828 high quality bases) assembled on 2006-12-21

> BS15405.5prime
GAAGTTATCACTCGACATGCACATTATCTGCAAGTCGCAGTGCGGAAATC
GCGCTGCTTTGAAGCGACCCAAAACCGGCGATGCCCTGTGCAAGGAGTGC
TTCTTCGCAGCCTTCGAGGCAGAGATCCATCACACAATCTCCTCCAGCAA
CTTGTTCCGACGTGGCGAGAAGGTGGCCGTAGCGGCCAGTGGAGGCAAGG
ACTCCACGGTCCTAGCGCACGTATTAAAACTGCTAAACGAACGCCATAAC
TACGGTCTGGAACTGGTGCTCCTTTCCATAGACGAAGGCATCACTGGATA
TCGGGATGACAGTTTGGAGACAGTGAAACAGAACCGTGACGACTACCAGA
TGCCACTAAAGATCCTGTCCTACGAGGAGCTCTACGGCTGGACCATGGAC
CGCATTGTTGCCCAGATCGGCCGTTCTAACAACTGCACATTTTGCGGCGT
CTTCCGCCGACAGGCCTTGGATAGAGGGGCCAAGCTGTTGGGCGTTGATA
GCATAGCCACAGGCCACAATGCAGATGACATTGCGGAGACTGTCTTGATG
AACGTGCTCCGTGGGGACACGGCGCGCCTGCGACGCTGCACGAGCATCCG
CACCGGCGGGGGCGAGGATACCATTCCCCGAGTGAAGCCCCTCAAGTACA
GCTACGAGAAAGAAATCGTGATGTACGCCCACTACAAAAAGCTGGTCTAC
TTCTCAACGGAGTGCGTATTCGCCCCCAATGCGTATCGCGGCCACGCTCG
AGCGTTTCTCAAGGATTTGGAGAAAGTGCGACCATCGGTTATAATGGACA
TCATCTACTCTGGCGAACAGCTTCGCTTCAAGGACACGGTAAAGAAGCCC
GAGCG

BS15405.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:20:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG8078-PA 1032 CG8078-RA 1..839 17..855 4195 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:42:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG8078-RA 1487 CG8078-RA 76..914 17..855 4195 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:42:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9097504..9098136 855..223 3165 100 Minus
2R 25286936 2R 9098189..9098349 222..62 805 100 Minus
2R 25286936 2R 9098403..9098450 64..17 240 100 Minus
Blast to na_te.dros performed on 2015-01-30 16:42:17 has no hits.

BS15405.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:25:58 Download gff for BS15405.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8078-PA 1..839 17..855 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:02:26 Download gff for BS15405.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8078-PA 1..839 17..855 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 15:52:25 Download gff for BS15405.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8078-RA 67..914 8..855 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 19:09:32 Download gff for BS15405.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8078-RA 67..914 8..855 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 19:09:32 Download gff for BS15405.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9097504..9098136 223..855 100 <- Minus
2R 9098189..9098346 65..222 100 <- Minus
2R 9098403..9098459 8..64 92   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 15:52:25 Download gff for BS15405.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4985009..4985641 223..855 100 <- Minus
arm_2R 4985694..4985851 65..222 100 <- Minus
arm_2R 4985908..4985964 8..64 92   Minus

BS15405.pep Sequence

Translation from 16 to 1047

> BS15405.pep
MHIICKSQCGNRAALKRPKTGDALCKECFFAAFEAEIHHTISSSNLFRRG
EKVAVAASGGKDSTVLAHVLKLLNERHNYGLELVLLSIDEGITGYRDDSL
ETVKQNRDDYQMPLKILSYEELYGWTMDRIVAQIGRSNNCTFCGVFRRQA
LDRGAKLLGVDSIATGHNADDIAETVLMNVLRGDTARLRRCTSIRTGGGE
DTIPRVKPLKYSYEKEIVMYAHYKKLVYFSTECVFAPNAYRGHARAFLKD
LEKVRPSVIMDIIYSGEQLRFKDTVKKPERGTCTRCGFVSSQQPCKACVL
LEGLNRGLPKLGIGKKSKGERMIAKQNQELALRERANLVKNDF*

BS15405.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:11:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG8078-PA 343 CG8078-PA 1..343 1..343 1787 100 Plus