Clone Sequence Records
BS15405.complete Sequence
1064 bp assembled on 2010-02-09
GenBank Submission: KX801321
> BS15405.complete
GAAGTTATCACTCGACATGCACATTATCTGCAAGTCGCAGTGCGGAAATC
GCGCTGCTTTGAAGCGACCCAAAACCGGCGATGCCCTGTGCAAGGAGTGC
TTCTTCGCAGCCTTCGAGGCAGAGATCCATCACACAATCTCCTCCAGCAA
CTTGTTCCGACGTGGCGAGAAGGTGGCCGTAGCGGCCAGTGGAGGCAAGG
ACTCCACGGTCCTAGCGCACGTATTAAAACTGCTAAACGAACGCCATAAC
TACGGTCTGGAACTGGTGCTCCTTTCCATAGACGAAGGCATCACTGGATA
TCGGGATGACAGTTTGGAGACAGTGAAACAGAACCGTGACGACTACCAGA
TGCCACTAAAGATCCTGTCCTACGAGGAGCTCTACGGCTGGACCATGGAC
CGCATTGTTGCCCAGATCGGCCGTTCTAACAACTGCACATTTTGCGGCGT
CTTCCGCCGACAGGCCTTGGATAGAGGGGCCAAGCTGTTGGGCGTTGATA
GCATAGCCACAGGCCACAATGCAGATGACATTGCGGAGACTGTCTTGATG
AACGTGCTCCGTGGGGACACGGCGCGCCTGCGACGCTGCACGAGCATCCG
CACCGGCGGGGGCGAGGATACCATTCCCCGAGTGAAGCCCCTCAAGTACA
GCTACGAGAAAGAAATCGTGATGTACGCCCACTACAAAAAGCTGGTCTAC
TTCTCAACGGAGTGCGTATTCGCCCCCAATGCGTATCGCGGCCACGCTCG
AGCGTTTCTCAAGGATTTGGAGAAAGTGCGACCATCGGTTATAATGGACA
TCATCTACTCTGGCGAACAGCTTCGCTTCAAGGACACGGTAAAGAAGCCC
GAGCGTGGCACATGCACCCGATGTGGCTTCGTTTCCTCACAGCAGCCGTG
CAAGGCGTGCGTCCTTCTCGAGGGTCTAAATAGAGGATTGCCGAAGCTGG
GCATAGGCAAGAAGTCGAAGGGCGAGCGAATGATTGCCAAGCAGAACCAG
GAACTAGCATTGCGGGAGCGAGCAAACTTAGTAAAAAACGATTTTTAAAA
GCTTTCTAGACCAT
BS15405.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:30:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8078-RA | 1032 | CG8078-PA | 1..1032 | 17..1048 | 5160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:30:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8078-RA | 1487 | CG8078-RA | 76..1107 | 17..1048 | 5160 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:30:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9097311..9098136 | 1048..223 | 4130 | 100 | Minus |
2R | 25286936 | 2R | 9098189..9098349 | 222..62 | 805 | 100 | Minus |
2R | 25286936 | 2R | 9098403..9098450 | 64..17 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:30:57 has no hits.
BS15405.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:11:53 Download gff for
BS15405.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8078-RA | 18..1047 | 17..1046 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:00:53 Download gff for
BS15405.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8078-RA | 76..1105 | 17..1046 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:06:17 Download gff for
BS15405.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8078-RA | 18..1047 | 17..1046 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:30:42 Download gff for
BS15405.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8078-RA | 76..1105 | 17..1046 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:30:42 Download gff for
BS15405.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9098189..9098346 | 65..222 | 100 | <- | Minus |
2R | 9098403..9098450 | 17..64 | 100 | | Minus |
2R | 9097313..9098136 | 223..1046 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:00:53 Download gff for
BS15405.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4984818..4985641 | 223..1046 | 100 | <- | Minus |
arm_2R | 4985694..4985851 | 65..222 | 100 | <- | Minus |
arm_2R | 4985908..4985955 | 17..64 | 100 | | Minus |
BS15405.3prime Sequence
909 bp (799 high quality bases) assembled on 2006-12-21
> BS15405.3prime
ATGGTCTAGAAAGCTTTTAAAAATCGTTTTTTACTAAGTTTGCTCGCTCC
CGCAATGCTAGTTCCTGGTTCTGCTTGGCAATCATTCGCTCGCCCTTCGA
CTTCTTGCCTATGCCCAGCTTCGGCAATCCTCTATTTAGACCCTCGAGAA
GGACGCACGCCTTGCACGGCTGCTGTGAGGAAACGAAGCCACATCGGGTG
CATGTGCCACGCTCGGGCTTCTTTACCGTGTCCTTGAAGCGAAGCTGTTC
GCCAGAGTAGATGATGTCCATTATAACCGATGGTCGCACTTTCTCCAAAT
CCTTGAGAAACGCTCGAGCGTGGCCGCGATACGCATTGGGGGCGAATACG
CACTCCGTTGAGAAGTAGACCAGCTTTTTGTAGTGGGCGTACATCACGAT
TTCTTTCTCGTAGCTGTACTTGAGGGGCTTCACTCGGGGAATGGTATCCT
CGCCCCCGCCGGTGCGGATGCTCGTGCAGCGTCGCAGGCGCGCCGTGTCC
CCACGGAGCACGTTCATCAAGACAGTCTCCGCAATGTCATCTGCATTGTG
GCCTGTGGCTATGCTATCAACGCCCAACAGCTTGGCCCCTCTATCCAAGG
CCTGTCGGCGGAAGACGCCGCAAAATGTGCAGTTGTTAGAACGGCCGATC
TGGGCAACAATGCGGTCCATGGTCCAGCCGTAGAGCTCCTCGTAGGACAG
GATCTTTAGTGGCATCTGGTAGTCGTCACGGTTCTGTTTCACTGTCTCCA
AACTGTCATCCCGATATCCAGTGATGCCTTCGTCTATGGAAAGGAGCACC
AGTTCCAGACCGTAGTTATGGCGTTCGTTTAGCAGTTTTAATACGTGCGC
TAGGACCGTGGAGTCCTTGCCTCCACTGGCCGCTACGGCCACCTTTCTCG
CACGTCGGA
BS15405.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:20:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8078-PA | 1032 | CG8078-RA | 154..1032 | 895..17 | 4395 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:58:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8078-RA | 1487 | CG8078-RA | 215..1107 | 909..17 | 4420 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:58:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9097311..9098136 | 17..842 | 4130 | 100 | Plus |
2R | 25286936 | 2R | 9098189..9098241 | 843..895 | 265 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:58:50 has no hits.
BS15405.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:25:57 Download gff for
BS15405.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8078-PA | 141..1032 | 17..908 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:02:24 Download gff for
BS15405.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8078-PA | 141..1032 | 17..908 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 16:37:37 Download gff for
BS15405.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8078-RA | 216..1107 | 17..908 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:15:35 Download gff for
BS15405.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8078-RA | 216..1107 | 17..908 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 02:15:35 Download gff for
BS15405.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9098189..9098254 | 843..908 | 97 | | Plus |
2R | 9097311..9098136 | 17..842 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 16:37:37 Download gff for
BS15405.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4984816..4985641 | 17..842 | 100 | <- | Plus |
arm_2R | 4985694..4985759 | 843..908 | 97 | | Plus |
BS15405.5prime Sequence
855 bp (828 high quality bases) assembled on 2006-12-21
> BS15405.5prime
GAAGTTATCACTCGACATGCACATTATCTGCAAGTCGCAGTGCGGAAATC
GCGCTGCTTTGAAGCGACCCAAAACCGGCGATGCCCTGTGCAAGGAGTGC
TTCTTCGCAGCCTTCGAGGCAGAGATCCATCACACAATCTCCTCCAGCAA
CTTGTTCCGACGTGGCGAGAAGGTGGCCGTAGCGGCCAGTGGAGGCAAGG
ACTCCACGGTCCTAGCGCACGTATTAAAACTGCTAAACGAACGCCATAAC
TACGGTCTGGAACTGGTGCTCCTTTCCATAGACGAAGGCATCACTGGATA
TCGGGATGACAGTTTGGAGACAGTGAAACAGAACCGTGACGACTACCAGA
TGCCACTAAAGATCCTGTCCTACGAGGAGCTCTACGGCTGGACCATGGAC
CGCATTGTTGCCCAGATCGGCCGTTCTAACAACTGCACATTTTGCGGCGT
CTTCCGCCGACAGGCCTTGGATAGAGGGGCCAAGCTGTTGGGCGTTGATA
GCATAGCCACAGGCCACAATGCAGATGACATTGCGGAGACTGTCTTGATG
AACGTGCTCCGTGGGGACACGGCGCGCCTGCGACGCTGCACGAGCATCCG
CACCGGCGGGGGCGAGGATACCATTCCCCGAGTGAAGCCCCTCAAGTACA
GCTACGAGAAAGAAATCGTGATGTACGCCCACTACAAAAAGCTGGTCTAC
TTCTCAACGGAGTGCGTATTCGCCCCCAATGCGTATCGCGGCCACGCTCG
AGCGTTTCTCAAGGATTTGGAGAAAGTGCGACCATCGGTTATAATGGACA
TCATCTACTCTGGCGAACAGCTTCGCTTCAAGGACACGGTAAAGAAGCCC
GAGCG
BS15405.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:20:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8078-PA | 1032 | CG8078-RA | 1..839 | 17..855 | 4195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:42:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8078-RA | 1487 | CG8078-RA | 76..914 | 17..855 | 4195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:42:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9097504..9098136 | 855..223 | 3165 | 100 | Minus |
2R | 25286936 | 2R | 9098189..9098349 | 222..62 | 805 | 100 | Minus |
2R | 25286936 | 2R | 9098403..9098450 | 64..17 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 16:42:17 has no hits.
BS15405.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:25:58 Download gff for
BS15405.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8078-PA | 1..839 | 17..855 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:02:26 Download gff for
BS15405.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8078-PA | 1..839 | 17..855 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 15:52:25 Download gff for
BS15405.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8078-RA | 67..914 | 8..855 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 19:09:32 Download gff for
BS15405.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8078-RA | 67..914 | 8..855 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 19:09:32 Download gff for
BS15405.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9097504..9098136 | 223..855 | 100 | <- | Minus |
2R | 9098189..9098346 | 65..222 | 100 | <- | Minus |
2R | 9098403..9098459 | 8..64 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 15:52:25 Download gff for
BS15405.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4985009..4985641 | 223..855 | 100 | <- | Minus |
arm_2R | 4985694..4985851 | 65..222 | 100 | <- | Minus |
arm_2R | 4985908..4985964 | 8..64 | 92 | | Minus |
BS15405.pep Sequence
Translation from 16 to 1047
> BS15405.pep
MHIICKSQCGNRAALKRPKTGDALCKECFFAAFEAEIHHTISSSNLFRRG
EKVAVAASGGKDSTVLAHVLKLLNERHNYGLELVLLSIDEGITGYRDDSL
ETVKQNRDDYQMPLKILSYEELYGWTMDRIVAQIGRSNNCTFCGVFRRQA
LDRGAKLLGVDSIATGHNADDIAETVLMNVLRGDTARLRRCTSIRTGGGE
DTIPRVKPLKYSYEKEIVMYAHYKKLVYFSTECVFAPNAYRGHARAFLKD
LEKVRPSVIMDIIYSGEQLRFKDTVKKPERGTCTRCGFVSSQQPCKACVL
LEGLNRGLPKLGIGKKSKGERMIAKQNQELALRERANLVKNDF*
BS15405.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:11:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8078-PA | 343 | CG8078-PA | 1..343 | 1..343 | 1787 | 100 | Plus |