Clone Sequence Records
BS15408.complete Sequence
1733 bp assembled on 2009-12-07
GenBank Submission: KX800281
> BS15408.complete
GAAGTTATCAGTCGACATGCTCAGCATTAGCAAAACAAAAATGGATTTTT
TAGAGGAAGGTAGATGGAAGGATCCGTTTGATGAACTTTTGGACTCCAGA
ACGAAACTAAGTAAAATGAACATAGTAAAACAAAATGTACGAGTAACCTA
TAACATTGACTCTAGTGTTGAAAATAGCAGCTATATAGAAATAAAAGAAC
CAAATCACAAAAACGAACCTTTAACTCTTGAAGATTGCTCTATAAAAGTG
TATTGCCCCAGTGATTCTATATCAACTCCTTGCGATAAACGATTAGGAGG
CACAACAGGATTATTTGAAACCGACCTCTCTCCAATTACTCGCTTAAAAC
TTGAAGGTGTGGAAGACAGTAGAGACAAATGCGCTGATACTAATGAGGCA
GATTTATATGTAAATGTTGAAATTCTTTTTCAAAACATAAATTCCAGCCC
TAAAAAATGTTCTAATTTTGGGAAAAAACGATTGAGTAATTTAAATAAGA
TGGTTACTGCTGTACACCCTTCGATTTCATTAAATCCGGGAAAATGGAGA
AAATCGCTAAACAATTTTATCAGATCAAAAATAACCGAAACAAATTTCAC
GAAAAAGGTAGAACGTCGAAGCTCAATATGCCAGGATCGAAAATCATTAG
TTTTGAAAGGCGAACATAAATTTGAGAATAAATATGAAGAAGATGTTCTT
AAATATTGCCATCAGTGTACACCACTTCCGTTTAATACTGCATACGAACA
ACATAAATTATTGAATACTAAGAAGATTGGCGAAGGGGCTTATGGAGAAG
TATTTCGTTGTTCGAGAAATCAAGAAGTACTGAAAGACCACATCTCTGAT
ATTGTATTAAAGATTATACCTTTGGAGGGTTCCACTGTAATTAATGGAGA
AAAGCAAAAAACATTCAGTCAAATTTTACCAGAAATAATTATAACTAAAA
AAATGTGCAGCCTTCGAACAAGTAAAACTAATTCTACGAATGGATTTGTG
AGCATACAAAAGGTATCACTAGTTAAAGGAAGGTATCCACCACATTTTAT
AAAGCTTTGGGAAAAGTATGACAACGAAAAGGGATCTGAAAATGACCATC
CGGAACTTTTTGGAGACAATCAACTTTTTGCAGTCCTAGAACTGAAGTTT
GCCGGAAGTGACATGGCAAATTTTAAATTTTTAAATTCCGAACAATCATA
TTACGCTTTACAACAGATTATTCTAGCGCTTGCTGTTGGTGAAGAAGAGT
ATCAATTTGAGCACAGGGACCTTCATTTGGGAAACATATTAATTGAATAC
ACCAATAAGAAGCACATAGTTTGTACATTCAAAAGCAGTAATTTAACTTT
GCTTTCAAAAGGAGTGAACGTTACTATTATTGACTACACACTTTCAAGAG
TTACAATTAATGACTGCTGCTATTTTAATGATCTCTCAAGAGATGAGGAA
CTTTTCCAGGCAACAGGAGATTATCAATACGATGTCTATCGAATGATGCG
GAATGAGTTAAAGAACAACTGGTCATCGTTTTCACCCAAAACAAATATCA
TATGGCTATCATATGTTATCGTTAAGGTACTGGATAGCGTGAAATACAAA
AGCATCAATACGAAAGTTCACAGGATGTACATTGATAAAATAAAGGAATT
GAAAAACATTATAATGACATTTGAAAGTGCTTCTCATTGCGCAAATTATC
TGTTTAATTTAAATTAAAAGCTTTCTAGACCAT
BS15408.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:28:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Haspin-RA | 1701 | CG40080-PA | 1..1701 | 17..1717 | 8505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:28:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Haspin-RA | 1815 | CG40080-RA | 55..1755 | 17..1717 | 8505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:28:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 4014305..4015217 | 103..1015 | 4565 | 100 | Plus |
| 2R | 25286936 | 2R | 4030000..4030298 | 1215..1513 | 1495 | 100 | Plus |
| 2R | 25286936 | 2R | 4029738..4029944 | 1010..1216 | 1035 | 100 | Plus |
| 2R | 25286936 | 2R | 4049073..4049282 | 1508..1717 | 1035 | 99.5 | Plus |
| 2R | 25286936 | 2R | 4072689..4072898 | 1508..1717 | 1035 | 99.5 | Plus |
| 2R | 25286936 | 2R | 4014165..4014251 | 17..103 | 435 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 02:28:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Stalker | 7256 | Stalker STALKER 7256bp | 1360..1424 | 613..550 | 115 | 66.2 | Minus |
| hobo | 2959 | hobo DMHFL1 2959bp Derived from M69216 (g157606) (Rel. 41, Last updated, Version 3). | 1030..1086 | 455..399 | 114 | 66.7 | Minus |
BS15408.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:50:23 Download gff for
BS15408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Haspin-RA | 83..1781 | 17..1715 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:14:56 Download gff for
BS15408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Haspin-RA | 55..1753 | 17..1715 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:15:35 Download gff for
BS15408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Haspin-RA | 83..1781 | 17..1715 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:12:07 Download gff for
BS15408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Haspin-RA | 55..1753 | 17..1715 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:12:07 Download gff for
BS15408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 4014165..4014250 | 17..102 | 100 | -> | Plus |
| 2R | 4014305..4015214 | 103..1012 | 100 | -> | Plus |
| 2R | 4029741..4029944 | 1013..1216 | 100 | -> | Plus |
| 2R | 4030002..4030297 | 1217..1512 | 100 | -> | Plus |
| 2R | 4049078..4049280 | 1513..1715 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:14:56 Download gff for
BS15408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2RHet | 3199430..3199515 | 17..102 | 100 | -> | Plus |
| 2RHet | 3199570..3200479 | 103..1012 | 100 | -> | Plus |
| 2RHet | 3215006..3215209 | 1013..1216 | 100 | -> | Plus |
| 2RHet | 3215267..3215562 | 1217..1512 | 100 | -> | Plus |
| 2RHet | 3234343..3234545 | 1513..1715 | 100 | | Plus |
BS15408.3prime Sequence
874 bp (767 high quality bases) assembled on 2006-12-21
> BS15408.3prime
ATGGTCTAGAAAGCTTTTACTTTAAATTAAACAGATAATTTGCGCAATGA
GAAGCACTTTCAAATGTCATTATAATGTTTTTCAATTCCTTTATTTTATC
AATGTACATCCTGTGAACTTTCGTATTGATGCTTTTGTATTTCACGCTAT
CCAGTACCTTAACGATAACATATGATAGCCATATGATATTTGTTTTGGGT
GAAAACGATGACCAGTTGTTCTTTAACTCATTCCGCATCATTCGATAGAC
ATCGTATTGATAATCTCCTGTTGCCTGGAAAAGTTCCTCATCTCTTGAGA
GATCATTAAAATAGCAGCAGTCATTAATTGTAACTCTTGAAAGTGTGTAG
TCAATAATAGTAACGTTCACTCCTTTTGAAAGCAAAGTTAAATTACTGCT
TTTGAATGTACAAACTATGTGCTTCTTATTGGTGTATTCAATTAATATGT
TTCCCAAATGAAGGTCCCTGTGCTCAAATTGATACTCTTCTTCACCAACA
GCAAGCGCTAGAATAATCTGTTGTAAAGCGTAATATGATTGTTCGGAATT
TAAAAATTTAAAATTTGCCATGTCACTTCCGGCAAACTTCAGTTCTAGGA
CTGCAAAAAGTTGATTGTCTCCAAAAAGTTCCGGATGGTCATTTTCAGAT
CCCTTTTCGTTGTCATACTTTTCCCAAAGCTTTATAAAATGTGGTGGATA
CCTTCCTTTAACTAGTGATACCTTTTGTATGCTCACAAATCCATTCGTAG
AATTAGTTTTACTTGTTCGAAGGCTGCACATTTTTTTTAGTATAATTATT
TCTGGTAAAATTTGACTGAATGTTTTTTGCTTTTCTCCATTAATTACAGT
GAAACCCTCCAAAGGTATAATCTT
BS15408.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 19:20:16 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:59:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Haspin-RA | 1815 | CG40080-RA | 898..1755 | 874..17 | 4215 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:59:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 4030000..4030298 | 519..221 | 1495 | 100 | Minus |
| 2R | 25286936 | 2R | 4029738..4029944 | 724..518 | 1035 | 100 | Minus |
| 2R | 25286936 | 2R | 4049073..4049282 | 226..17 | 1020 | 99 | Minus |
| 2R | 25286936 | 2R | 4072689..4072898 | 226..17 | 1020 | 99 | Minus |
| 2R | 25286936 | 2R | 4015062..4015217 | 874..719 | 720 | 97.4 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:59:51 has no hits.
BS15408.3prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 16:37:54 Download gff for
BS15408.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Haspin-RA | 898..1755 | 17..874 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:18:11 Download gff for
BS15408.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Haspin-RA | 898..1755 | 17..874 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 02:18:11 Download gff for
BS15408.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 4029741..4029944 | 518..721 | 100 | -> | Minus |
| 2R | 4030002..4030297 | 222..517 | 100 | -> | Minus |
| 2R | 4049078..4049282 | 17..221 | 99 | | Minus |
| 2R | 4015062..4015214 | 722..874 | 98 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 16:37:54 Download gff for
BS15408.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2RHet | 3200327..3200479 | 722..874 | 98 | -> | Minus |
| 2RHet | 3215006..3215209 | 518..721 | 100 | -> | Minus |
| 2RHet | 3215267..3215562 | 222..517 | 100 | -> | Minus |
| 2RHet | 3234343..3234547 | 17..221 | 99 | | Minus |
BS15408.5prime Sequence
782 bp (780 high quality bases) assembled on 2006-12-21
> BS15408.5prime
GAAGTTATCAGTCGACATGCTCAGCATTAGCAAAACAAAAATGGATTTTT
TAGAGGAAGGTAGATGGAAGGATCCGTTTGATGAACTTTTGGACTCCAGA
ACGAAACTAAGTAAAATGAACATAGTAAAACAAAATGTACGAGTAACCTA
TAACATTGACTCTAGTGTTGAAAATAGCAGCTATATAGAAATAAAAGAAC
CAAATCACAAAAACGAACCTTTAACTCTTGAAGATTGCTCTATAAAAGTG
TATTGCCCCAGTGATTCTATATCAACTCCTTGCGATAAACGATTAGGAGG
CACAACAGGATTATTTGAAACCGACCTCTCTCCAATTACTCGCTTAAAAC
TTGAAGGTGTGGAAGACAGTAGAGACAAATGCGCTGATACTAATGAGGCA
GATTTATATGTAAATGTTGAAATTCTTTTTCAAAACATAAATTCCAGCCC
TAAAAAATGTTCTAATTTTGGGAAAAAACGATTGAGTAATTTAAATAAGA
TGGTTACTGCTGTACACCCTTCGATTTCATTAAATCCGGGAAAATGGAGA
AAATCGCTAAACAATTTTATCAGATCAAAAATAACCGAAACAAATTTCAC
GAAAAAGGTAGAACGTCGAAGCTCAATATGCCAGGATCGAAAATCATTAG
TTTTGAAAGGCGAACATAAATTTGAGAATAAATATGAAGAAGATGTTCTT
AAATATTGCCATCAGTGTACACCACTTCCGTTTAATACTGCATACGAACA
ACATAAATTATTGAATACTAAGAAGATTGGCG
BS15408.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 19:20:17 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 12:27:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Haspin-RA | 1815 | CG40080-RA | 55..820 | 17..782 | 3830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 12:27:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 4014305..4014984 | 103..782 | 3400 | 100 | Plus |
| 2R | 25286936 | 2R | 4014165..4014251 | 17..103 | 435 | 100 | Plus |
Blast to na_te.dros performed 2015-01-30 12:27:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Stalker | 7256 | Stalker STALKER 7256bp | 1360..1424 | 613..550 | 115 | 66.2 | Minus |
| hobo | 2959 | hobo DMHFL1 2959bp Derived from M69216 (g157606) (Rel. 41, Last updated, Version 3). | 1030..1086 | 455..399 | 114 | 66.7 | Minus |
BS15408.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 09:36:49 Download gff for
BS15408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Haspin-RA | 55..820 | 17..782 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 14:01:20 Download gff for
BS15408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Haspin-RA | 55..820 | 17..782 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 14:01:20 Download gff for
BS15408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 4014165..4014250 | 17..102 | 100 | -> | Plus |
| 2R | 4014305..4014984 | 103..782 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 09:36:49 Download gff for
BS15408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2RHet | 3199430..3199515 | 17..102 | 100 | -> | Plus |
| 2RHet | 3199570..3200249 | 103..782 | 100 | | Plus |
BS15408.pep Sequence
Translation from 16 to 1716
> BS15408.pep
MLSISKTKMDFLEEGRWKDPFDELLDSRTKLSKMNIVKQNVRVTYNIDSS
VENSSYIEIKEPNHKNEPLTLEDCSIKVYCPSDSISTPCDKRLGGTTGLF
ETDLSPITRLKLEGVEDSRDKCADTNEADLYVNVEILFQNINSSPKKCSN
FGKKRLSNLNKMVTAVHPSISLNPGKWRKSLNNFIRSKITETNFTKKVER
RSSICQDRKSLVLKGEHKFENKYEEDVLKYCHQCTPLPFNTAYEQHKLLN
TKKIGEGAYGEVFRCSRNQEVLKDHISDIVLKIIPLEGSTVINGEKQKTF
SQILPEIIITKKMCSLRTSKTNSTNGFVSIQKVSLVKGRYPPHFIKLWEK
YDNEKGSENDHPELFGDNQLFAVLELKFAGSDMANFKFLNSEQSYYALQQ
IILALAVGEEEYQFEHRDLHLGNILIEYTNKKHIVCTFKSSNLTLLSKGV
NVTIIDYTLSRVTINDCCYFNDLSRDEELFQATGDYQYDVYRMMRNELKN
NWSSFSPKTNIIWLSYVIVKVLDSVKYKSINTKVHRMYIDKIKELKNIIM
TFESASHCANYLFNLN*
BS15408.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:04:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Haspin-PA | 566 | CG40080-PA | 1..566 | 1..566 | 2963 | 100 | Plus |
