Clone Sequence Records
BS15409.complete Sequence
845 bp assembled on 2010-02-09
GenBank Submission: KX803733
> BS15409.complete
GAAGTTATCAGTCGACATGTCGGGAGGCTTAGATATTCTGTCCCTCAAGG
AGGACGACATCACCAAGATGTTGGTGGCCACCACCCATCTGGGTTCCGAG
AACGTCAACTTCCAGATGGAGCAGTACGTGTACAAGCGCCGCGCTGATGG
CGTCAACATCCTCAACCTGGGCAAGACCTGGGAGAAGCTGCAGCTGGCGG
CCCGCGCCATCGTGGCCATCGATAACCCCTCGGACATCTTCGTCATCTCG
TCGCGTCCGATCGGCCAGCGCGCGGTGCTGAAGTTCGCCAAGTACACCGA
CACCACTCCGATCGCCGGCCGCTTCACGCCCGGTGCCTTCACCAACCAGA
TCCAGCCCGCTTTCCGCGAGCCGCGTCTGCTGGTGGTGACCGACCCCAAC
ACCGATCACCAGCCCATCATGGAGGCCAGCTACGTGAACATCCCCGTGAT
TGCCTTCACGAACACCGACTCGCCTCTGCGCTACATCGACATTGCCATTC
CGTGCAACAACAAGTCGGCCCACTCTATCGGTCTGATGTGGTGGCTGTTG
GCCCGCGAAGTGCTCCGCCTGCGTGGCACCATCTCTCGCAGCGTCGAGTG
GCCCGTAGTCGTCGATCTGTTCTTCTACCGCGATCCCGAGGAGGCCGAGA
AGGAGGAGGCCGCCGCCAAGGAGCTGTTGCCGCCACCCAAGATTGAGGAG
GCCGTCGACCACCCGGTCGAGGAGACCACCAACTGGGCCGATGAGGTTGC
CGCCGAGACCGTTGGCGGAGTGGAGGACTGGAACGAGGACACCGTCAAGA
CCTCCTGGGGTAGCGACGGCCAGTTCTAAAAGCTTTCTAGACCAT
BS15409.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:30:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sta-RF | 813 | CG14792-PF | 1..813 | 17..829 | 4065 | 100 | Plus |
| sta-RE | 813 | CG14792-PE | 1..813 | 17..829 | 4065 | 100 | Plus |
| sta-RB | 813 | CG14792-PB | 1..813 | 17..829 | 4065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:30:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sta-RF | 1088 | CG14792-RF | 184..998 | 15..829 | 4075 | 100 | Plus |
| sta-RE | 1035 | CG14792-RE | 131..945 | 15..829 | 4075 | 100 | Plus |
| sta-RB | 1083 | CG14792-RB | 179..993 | 15..829 | 4075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:30:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1481887..1482480 | 829..236 | 2970 | 100 | Minus |
| X | 23542271 | X | 1482673..1482893 | 235..15 | 1105 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:30:48 has no hits.
BS15409.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:11:52 Download gff for
BS15409.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sta-RD | 130..940 | 17..827 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:00:49 Download gff for
BS15409.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sta-RB | 181..991 | 17..827 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:02:17 Download gff for
BS15409.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sta-RD | 130..940 | 17..827 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:30:39 Download gff for
BS15409.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sta-RB | 181..991 | 17..827 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:30:39 Download gff for
BS15409.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1481889..1482480 | 236..827 | 100 | <- | Minus |
| X | 1482673..1482891 | 17..235 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:00:49 Download gff for
BS15409.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1375922..1376513 | 236..827 | 100 | <- | Minus |
| arm_X | 1376706..1376924 | 17..235 | 100 | | Minus |
BS15409.3prime Sequence
848 bp (703 high quality bases) assembled on 2006-12-21
> BS15409.3prime
ATGGTCTAGAAAGCTTTTACATTTGGCCGTCGCTACCCCAGGAGGTCTTG
ACGGTGTCCTCGTTCCAGTCCTCCACTCCGCCAACGGTCTCGGCGGCAAC
CTCATCGGCCCAGTTGGTGGTCTCCTCGACCGGGTGGTCGACGGCCTCCT
CAATCTTGGGTGGCGGCAACAGCTCCTTGGCGGCGGCCTCCTCCTTCTCG
GCCTCCTCGGGATCGCGGTAGAAGAACAGATCGACGACTACGGGCCACTC
GACGCTGCGAGAGATGGTGCCACGCAGGCGGAGCACTTCGCGGGCCAACA
GCCACCACATCAGACCGATAGAGTGGGCCGACTTGTTGTTGCACGGAATG
GCAATGTCGATGTAGCGCAGAGGCGAGTCGGTGTTCGTGAAGGCAATCAC
GGGGATGTTCACGTAGCTGGCCTCCATGATGGGCTGGTGATCGGTGTTGG
GGTCGGTCACCACCAGCAGACGCGGCTCGCGGAAAGCGGGCTGGATCTGG
TTGGTGAAGGCACCGGGCGTGAAGCGGCCGGCGATCGGAGTGGTGTCGGT
GTACTTGGCGAACTTCAGCACCGCGCGCTGGCCGATCGGACGCGACGAGA
TGACGAAGATGTCCGAGGGGTTATCGATGGCCACGATGGCGCGGGCCGCC
AGCTGCAGCTTCTCCCAGGTCTTGCCCAGGTTGAGGATGTTGACGCCATC
AGCGCGGCGCTTGTACACGTACTGCTCCATCTGGAAGTTGACGTTCTCGG
AACCCAGATGGGTGGTGGCCACCAACATCTTGGTGATGTCGTCCTCCTTG
AGGGACAAAATATCTAAGCCTCCCGACATGTCGACTGATAACTTCGTA
BS15409.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:20:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14792-PD | 942 | sta-RD | 128..935 | 831..24 | 4015 | 99.8 | Minus |
| CG14792-PA | 813 | sta-RA | 1..806 | 829..24 | 4005 | 99.8 | Minus |
| CG14792-PB | 813 | sta-RB | 1..806 | 829..24 | 4005 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:22:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sta-RF | 1088 | CG14792-RF | 184..991 | 831..24 | 4025 | 99.9 | Minus |
| sta-RE | 1035 | CG14792-RE | 131..938 | 831..24 | 4025 | 99.9 | Minus |
| sta-RB | 1083 | CG14792-RB | 179..986 | 831..24 | 4025 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:22:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1481894..1482480 | 24..610 | 2935 | 100 | Plus |
| X | 23542271 | X | 1482673..1482893 | 611..831 | 1090 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:22:16 has no hits.
BS15409.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:26:01 Download gff for
BS15409.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14792-PD | 124..942 | 17..835 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:02:27 Download gff for
BS15409.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14792-PD | 124..942 | 17..835 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 13:15:00 Download gff for
BS15409.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sta-RB | 175..993 | 17..835 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:37:05 Download gff for
BS15409.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sta-RB | 175..993 | 17..835 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:37:05 Download gff for
BS15409.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1481887..1482480 | 17..610 | 99 | <- | Plus |
| X | 1482673..1482897 | 611..835 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 13:15:00 Download gff for
BS15409.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1375920..1376513 | 17..610 | 99 | <- | Plus |
| arm_X | 1376706..1376930 | 611..835 | 98 | | Plus |
BS15409.5prime Sequence
805 bp (635 high quality bases) assembled on 2006-12-21
> BS15409.5prime
GAAGTTATCATTCGACATGTCGGGAGGCTTAGATATTCTGTCCCTCAAGG
AGGACGACATCACCAAGATGTTGGTGGCCACCACCCATCTGGGTTCCGAG
AACGTCAACTTCCAGATGGAGCAGTACGTGTACAAGCGCCGCGCTGATGG
CGTCAACATCCTCAACCTGGGCAAGACCTGGGAGAAGCTGCAGCTGGCGG
CCCGCGCCATCGTGGCCATCGATAACCCCTCGGACATCTTCGTCATCTCG
TCGCGTCCGATCGGCCAGCGCGCGGTGCTGAAGTTCGCCAAGTACACCGA
CACCACTCCGATCGCCGGCCGCTTCACGCCCGGTGCCTTCACCAACCAGA
TCCAGCCCGCTTTCCGCGAGCCGCGTCTGCTGGTGGTGACCGACCCCAAC
ACCGATCACCACCCCATCATGGAGGCCAGCTACGTGAACATCCCCGTGAT
TGCCTTCACGAACACCGACTCGCCTCTGCGCTACATCGACATTGCCATTC
CGTGCAACAACAAGTCGGCCCACTCTATCGGTCTGATGTGGTGGCTGTTG
GCCCGCGAAGTGCTCCGCCTGCGTGGCACCATCTCTCGCAGCGTCGAGTG
GCCCGTAGTCGTCGATCTGTTCTTCTACCGCGATCCCGAGGAGGCCGAGA
AGGAGGAGGCCGCCGCCAAGGAGCTGTTGCCGCCACCCAAGATTGAGGAG
GCCGTCGACCACCCGGTCGAGGAGACCACCAACTGGGCCGATGAGGTTGC
CGCCGAGACCGTTGGCGGAGTGGAGGACTGGAACGAGGACACCGTCAAGA
CCTCC
BS15409.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:20:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14792-PD | 942 | sta-RD | 128..918 | 15..805 | 3930 | 99.8 | Plus |
| CG14792-PA | 813 | sta-RA | 1..789 | 17..805 | 3920 | 99.8 | Plus |
| CG14792-PB | 813 | sta-RB | 1..789 | 17..805 | 3920 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:01:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sta-RF | 1088 | CG14792-RF | 184..974 | 15..805 | 3940 | 99.9 | Plus |
| sta-RE | 1035 | CG14792-RE | 131..921 | 15..805 | 3940 | 99.9 | Plus |
| sta-RB | 1083 | CG14792-RB | 179..969 | 15..805 | 3940 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:01:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1481911..1482480 | 805..236 | 2835 | 99.8 | Minus |
| X | 23542271 | X | 1482673..1482893 | 235..15 | 1105 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:01:10 has no hits.
BS15409.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:26:03 Download gff for
BS15409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14792-PD | 125..918 | 11..805 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:02:29 Download gff for
BS15409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14792-PD | 125..918 | 11..805 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 16:39:31 Download gff for
BS15409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sta-RB | 176..969 | 11..805 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:30:06 Download gff for
BS15409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sta-RB | 176..969 | 11..805 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:30:06 Download gff for
BS15409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1481911..1482480 | 236..805 | 99 | <- | Minus |
| X | 1482673..1482896 | 11..235 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 16:39:31 Download gff for
BS15409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1375944..1376513 | 236..805 | 99 | <- | Minus |
| arm_X | 1376706..1376929 | 11..235 | 99 | | Minus |
BS15409.pep Sequence
Translation from 16 to 828
> BS15409.pep
MSGGLDILSLKEDDITKMLVATTHLGSENVNFQMEQYVYKRRADGVNILN
LGKTWEKLQLAARAIVAIDNPSDIFVISSRPIGQRAVLKFAKYTDTTPIA
GRFTPGAFTNQIQPAFREPRLLVVTDPNTDHQPIMEASYVNIPVIAFTNT
DSPLRYIDIAIPCNNKSAHSIGLMWWLLAREVLRLRGTISRSVEWPVVVD
LFFYRDPEEAEKEEAAAKELLPPPKIEEAVDHPVEETTNWADEVAAETVG
GVEDWNEDTVKTSWGSDGQF*
BS15409.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:11:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sta-PF | 270 | CG14792-PF | 1..270 | 1..270 | 1409 | 100 | Plus |
| sta-PE | 270 | CG14792-PE | 1..270 | 1..270 | 1409 | 100 | Plus |
| sta-PB | 270 | CG14792-PB | 1..270 | 1..270 | 1409 | 100 | Plus |
| sta-PA | 270 | CG14792-PA | 1..270 | 1..270 | 1409 | 100 | Plus |
