Clone Sequence Records
BS15410.3prime Sequence
916 bp (808 high quality bases) assembled on 2006-12-21
> BS15410.3prime
ATGGTCTAGAAAGCTTTCACTTAATGTAGCCCTGATCGATGGCGTGCTTG
AAGATATCAGCCAGTCGCTGCTGCTTGGCGGACTCCTTGAAGGGTGTGAT
ATTCCAGATGTCGGTGAGAATGGCGTTCTCCTTGATTCCATCCAGATCGG
CCACCTCATCGTCCTCCATCATCGTCATCGGCAGCGATTCGATGCCCATG
CCGCAACCAAAGCGACCAAAGTTCTTTAGCTCCTCTTGCAGTGATTCCCA
GGAGATGATAGACTCTGCATTGCCACCGAGATCCTGAATCAAATCCTGGG
CGCTCTCCAGGTAGGCGCGGAGCAGCTCATCGTAGTGCTGTTCCCTCAGC
TCCTGGCTAGTGCAGGAATAGATGAAGAAGCTCAGGTCGAGGGCCAAGGA
GGAGCACCTGGCCAACTGGAAATCAATGATGATGATCTCCTCCGATTGTC
CCCGTTCGTTGTACTTGGTCAGAAAGTTGGGCGTCCAGCAATCGCCGTGC
CCGAAGACACTCAACTTGGAGCGAGTGGACACCAGATTGATCAGATCATC
GAACAGCGGCGGCTGCAGGAAGTTTGTGGCCACAGTCTCGTATTTGCTAT
TCGGATAGATCTGCTTGACGGCGTCCGTGGCCACATTCTCCGCCAGCAGG
AGGAAGCCCGTGTACCACTCGCGGGTGTGTTCGCCATAGTAGGTCTCCTC
CAGCGAACCAGCAGCCTTCTCGAAGTTCTTGCTATCCAGGGCATTGAAGG
CCAGGGCCACGCCATGGAAACGACCCAGGGTCCGCATCGTCAGCAGGGCA
TCTTCCAGCGAAATGTAGTCTTGACGTACAGGTGCCCTGTAGCCCCTGGG
ACCCACATCCTCCAGGGCGATGAAATCGTTGACGCCCTCGCACAAGCTGG
CCAGGCAGCGGGGGTA
BS15410.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:20:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2004-PA | 1278 | CG2004-RA | 379..1278 | 916..17 | 4450 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 07:18:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2004-RG | 1920 | CG2004-RG | 895..1794 | 916..17 | 4470 | 99.8 | Minus |
CG2004-RF | 1509 | CG2004-RF | 484..1383 | 916..17 | 4470 | 99.8 | Minus |
CG2004-RD | 1729 | CG2004-RD | 704..1603 | 916..17 | 4470 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 07:18:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8712598..8713406 | 17..825 | 4045 | 100 | Plus |
X | 23542271 | X | 8713599..8713690 | 825..916 | 430 | 97.8 | Plus |
Blast to na_te.dros performed on 2015-02-08 07:18:29 has no hits.
BS15410.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:26:04 Download gff for
BS15410.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2004-PA | 380..1278 | 17..915 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:02:31 Download gff for
BS15410.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2004-PA | 380..1278 | 17..915 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 22:22:57 Download gff for
BS15410.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2004-RC | 616..1517 | 12..915 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 08:21:00 Download gff for
BS15410.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2004-RD | 705..1606 | 12..915 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 08:21:00 Download gff for
BS15410.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8712595..8713405 | 12..824 | 99 | <- | Plus |
X | 8713599..8713689 | 825..915 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 22:22:57 Download gff for
BS15410.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8606628..8607438 | 12..824 | 99 | <- | Plus |
arm_X | 8607632..8607722 | 825..915 | 97 | | Plus |
BS15410.5prime Sequence
808 bp (713 high quality bases) assembled on 2006-12-21
> BS15410.5prime
GAAGTTATCAGTCGACATGAGCACCTTTCCCAGCTTCGCGGACATTTCGG
CCAAATTCTCGGAGGCGACGCTGGACGAGATCATCCGAAACGCGGGCGGC
ACCCGGCACACCTCGTACAAATTTGGCCCAAGTGGCAAGAAGGGCGACGC
CTATCTGAGCCGTGTCTTCCGCATCACCATCTACGGCGTCAAGGAGGCGG
AAGAGGGCCAGGATGAGAAGCAACTAGAGATCAGTGTGATCGTGAAGGCC
ATGCCCGACAATCTGCACCGTCGGCGACTCTTCCGTTCGGTGATATTCTT
CCGCAACGAGATCAACTTCTACACCAAGGTGTTGCCGGCCATCGAGGCAT
TCCAGAAGTCCCGCCAGCCCGCGCCTAAGAAGCCCTTCGTGGAGTACCCC
CGCTGCCTGGCCAGCCTGTGCGATGGCGTCAACGATTTCATCGCCCTGGA
GGATGTGGGTCCCAGGGGCTACAGGGCACCTGTACGTCAAGACTACATTT
CGCTGGAAGATGCCCTGCTGACGATGCGGACCCTGGGTCGTTTCCATGGC
GTGGCCCTGGCCTTCAATGCCCTGGATAGCAAGAACTTCGAGAAGGCTGC
TGGTTCGCTGGAGGAGACCTACTATGGCGAACACACCCGCGAGTGGTACA
CGGGCTTCCTCCTGCTGGCGGAGAATGTGGCCACGGACGCCGTCAAGCAG
ATCTATCCGAATAGCAAATACGAGACTGTGGCCACAAACTTCCTGCAGCC
GCCGCTGTTCGATGATCTGATCAATCTGGTGTCCACTCGCTCCAAGTTGA
GTGTCTTC
BS15410.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:20:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2004-PA | 1278 | CG2004-RA | 1..792 | 17..808 | 3960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 07:22:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2004-RG | 1920 | CG2004-RG | 517..1308 | 17..808 | 3960 | 100 | Plus |
CG2004-RF | 1509 | CG2004-RF | 106..897 | 17..808 | 3960 | 100 | Plus |
CG2004-RD | 1729 | CG2004-RD | 326..1117 | 17..808 | 3960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 07:22:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8713599..8714068 | 486..17 | 2350 | 100 | Minus |
X | 23542271 | X | 8713084..8713406 | 808..486 | 1615 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 07:22:36 has no hits.
BS15410.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:26:04 Download gff for
BS15410.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2004-PA | 1..792 | 17..808 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:02:33 Download gff for
BS15410.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2004-PA | 1..792 | 17..808 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 22:23:40 Download gff for
BS15410.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2004-RC | 230..1028 | 9..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 08:21:42 Download gff for
BS15410.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2004-RD | 319..1117 | 9..808 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 08:21:42 Download gff for
BS15410.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8713084..8713405 | 487..808 | 100 | <- | Minus |
X | 8713599..8714072 | 9..486 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 22:23:40 Download gff for
BS15410.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8607117..8607438 | 487..808 | 100 | <- | Minus |
arm_X | 8607632..8608105 | 9..486 | 99 | | Minus |
BS15410.complete Sequence
1310 bp assembled on 2006-11-29
GenBank Submission: FJ637931
> BS15410.complete
GAAGTTATCAGTCGACATGAGCACCTTTCCCAGCTTCGCGGACATTTCGG
CCAAATTCTCGGAGGCGACGCTGGACGAGATCATCCGAAACGCGGGCGGC
ACCCGGCACACCTCGTACAAATTTGGCCCAAGTGGCAAGAAGGGCGACGC
CTATCTGAGCCGTGTCTTCCGCATCACCATCTACGGCGTCAAGGAGGCGG
AAGAGGGCCAGGATGAGAAGCAACTAGAGATCAGTGTGATCGTGAAGGCC
ATGCCCGACAATCTGCACCGTCGGCGACTCTTCCGTTCGGTGATATTCTT
CCGCAACGAGATCAACTTCTACACCAAGGTGTTGCCGGCCATCGAGGCAT
TCCAGAAGTCCCGCCAGCCCGCGCCTAAGAAGCCCTTCGTGGAGTACCCC
CGCTGCCTGGCCAGCCTGTGCGATGGCGTCAACGATTTCATCGCCCTGGA
GGATGTGGGTCCCAGGGGCTACAGGGCACCTGTACGTCAAGACTACATTT
CGCTGGAAGATGCCCTGCTGACGATGCGGACCCTGGGTCGTTTCCATGGC
GTGGCCCTGGCCTTCAATGCCCTGGATAGCAAGAACTTCGAGAAGGCTGC
TGGTTCGCTGGAGGAGACCTACTATGGCGAACACACCCGCGAGTGGTACA
CGGGCTTCCTCCTGCTGGCGGAGAATGTGGCCACGGACGCCGTCAAGCAG
ATCTATCCGAATAGCAAATACGAGACTGTGGCCACAAACTTCCTGCAGCC
GCCGCTGTTCGATGATCTGATCAATCTGGTGTCCACTCGCTCCAAGTTGA
GTGTCTTCGGGCACGGCGATTGCTGGACGCCCAACTTTCTGACCAAGTAC
AACGAACGGGGACAATCGGAGGAGATCATCATCATTGATTTCCAGTTGGC
CAGGTGCTCCTCCTTGGCCCTCGACCTGAGCTTCTTCATCTATTCCTGCA
CTAGCCAGGAGCTGAGGGAACAGCACTACGATGAGCTGCTCCGCGCCTAC
CTGGAGAGCGCCCAGGATTTGATTCAGGATCTCGGTGGCAATGCAGAGTC
TATCATCTCCTGGGAATCACTGCAAGAGGAGCTAAAGAACTTTGGTCGCT
TTGGTTGCGGCATGGGCATCGAATCGCTGCCGATGACGATGATGGAGGAC
GATGAGGTGGCCGATCTGGATGGAATCAAGGAGAACGCCATTCTCACCGA
CATCTGGAATATCACACCCTTCAAGGAGTCCGCCAAGCAGCAGCGACTGG
CTGATATCTTCAAGCACGCCATCGATCAGGGCTACATTAAGTGAAAGCTT
TCTAGACCAT
BS15410.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:02:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2004-RG | 1278 | CG2004-PG | 1..1278 | 17..1294 | 6390 | 100 | Plus |
CG2004-RF | 1278 | CG2004-PF | 1..1278 | 17..1294 | 6390 | 100 | Plus |
CG2004-RD | 1278 | CG2004-PD | 1..1278 | 17..1294 | 6390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:02:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2004-RG | 1920 | CG2004-RG | 517..1794 | 17..1294 | 6390 | 100 | Plus |
CG2004-RF | 1509 | CG2004-RF | 106..1383 | 17..1294 | 6390 | 100 | Plus |
CG2004-RD | 1729 | CG2004-RD | 326..1603 | 17..1294 | 6390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:02:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8712598..8713406 | 1294..486 | 4045 | 100 | Minus |
X | 23542271 | X | 8713599..8714068 | 486..17 | 2350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:02:18 has no hits.
BS15410.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:32:24 Download gff for
BS15410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2004-RA | 1..1278 | 17..1294 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:04:53 Download gff for
BS15410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2004-RA | 218..1505 | 9..1299 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:03:07 Download gff for
BS15410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2004-RC | 237..1513 | 17..1293 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:32:24 Download gff for
BS15410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2004-RA | 218..1505 | 9..1299 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:01:24 Download gff for
BS15410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2004-RD | 326..1602 | 17..1293 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:01:24 Download gff for
BS15410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8712599..8713405 | 487..1293 | 100 | <- | Minus |
X | 8713599..8714068 | 17..486 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:03:07 Download gff for
BS15410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8606632..8607438 | 487..1293 | 100 | <- | Minus |
arm_X | 8607632..8608101 | 17..486 | 100 | | Minus |
BS15410.pep Sequence
Translation from 16 to 1293
> BS15410.pep
MSTFPSFADISAKFSEATLDEIIRNAGGTRHTSYKFGPSGKKGDAYLSRV
FRITIYGVKEAEEGQDEKQLEISVIVKAMPDNLHRRRLFRSVIFFRNEIN
FYTKVLPAIEAFQKSRQPAPKKPFVEYPRCLASLCDGVNDFIALEDVGPR
GYRAPVRQDYISLEDALLTMRTLGRFHGVALAFNALDSKNFEKAAGSLEE
TYYGEHTREWYTGFLLLAENVATDAVKQIYPNSKYETVATNFLQPPLFDD
LINLVSTRSKLSVFGHGDCWTPNFLTKYNERGQSEEIIIIDFQLARCSSL
ALDLSFFIYSCTSQELREQHYDELLRAYLESAQDLIQDLGGNAESIISWE
SLQEELKNFGRFGCGMGIESLPMTMMEDDEVADLDGIKENAILTDIWNIT
PFKESAKQQRLADIFKHAIDQGYIK*
BS15410.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:23:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2004-PG | 425 | CG2004-PG | 1..425 | 1..425 | 2206 | 100 | Plus |
CG2004-PF | 425 | CG2004-PF | 1..425 | 1..425 | 2206 | 100 | Plus |
CG2004-PD | 425 | CG2004-PD | 1..425 | 1..425 | 2206 | 100 | Plus |
CG2004-PC | 425 | CG2004-PC | 1..425 | 1..425 | 2206 | 100 | Plus |
CG2004-PA | 425 | CG2004-PA | 1..425 | 1..425 | 2206 | 100 | Plus |