Clone BS15410 Report

Search the DGRC for BS15410

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:154
Well:10
Vector:pDNR-Dual
Associated Gene/TranscriptCG2004-RA
Protein status:BS15410.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15410.3prime Sequence

916 bp (808 high quality bases) assembled on 2006-12-21

> BS15410.3prime
ATGGTCTAGAAAGCTTTCACTTAATGTAGCCCTGATCGATGGCGTGCTTG
AAGATATCAGCCAGTCGCTGCTGCTTGGCGGACTCCTTGAAGGGTGTGAT
ATTCCAGATGTCGGTGAGAATGGCGTTCTCCTTGATTCCATCCAGATCGG
CCACCTCATCGTCCTCCATCATCGTCATCGGCAGCGATTCGATGCCCATG
CCGCAACCAAAGCGACCAAAGTTCTTTAGCTCCTCTTGCAGTGATTCCCA
GGAGATGATAGACTCTGCATTGCCACCGAGATCCTGAATCAAATCCTGGG
CGCTCTCCAGGTAGGCGCGGAGCAGCTCATCGTAGTGCTGTTCCCTCAGC
TCCTGGCTAGTGCAGGAATAGATGAAGAAGCTCAGGTCGAGGGCCAAGGA
GGAGCACCTGGCCAACTGGAAATCAATGATGATGATCTCCTCCGATTGTC
CCCGTTCGTTGTACTTGGTCAGAAAGTTGGGCGTCCAGCAATCGCCGTGC
CCGAAGACACTCAACTTGGAGCGAGTGGACACCAGATTGATCAGATCATC
GAACAGCGGCGGCTGCAGGAAGTTTGTGGCCACAGTCTCGTATTTGCTAT
TCGGATAGATCTGCTTGACGGCGTCCGTGGCCACATTCTCCGCCAGCAGG
AGGAAGCCCGTGTACCACTCGCGGGTGTGTTCGCCATAGTAGGTCTCCTC
CAGCGAACCAGCAGCCTTCTCGAAGTTCTTGCTATCCAGGGCATTGAAGG
CCAGGGCCACGCCATGGAAACGACCCAGGGTCCGCATCGTCAGCAGGGCA
TCTTCCAGCGAAATGTAGTCTTGACGTACAGGTGCCCTGTAGCCCCTGGG
ACCCACATCCTCCAGGGCGATGAAATCGTTGACGCCCTCGCACAAGCTGG
CCAGGCAGCGGGGGTA

BS15410.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:20:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG2004-PA 1278 CG2004-RA 379..1278 916..17 4450 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 07:18:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG2004-RG 1920 CG2004-RG 895..1794 916..17 4470 99.8 Minus
CG2004-RF 1509 CG2004-RF 484..1383 916..17 4470 99.8 Minus
CG2004-RD 1729 CG2004-RD 704..1603 916..17 4470 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 07:18:26
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8712598..8713406 17..825 4045 100 Plus
X 23542271 X 8713599..8713690 825..916 430 97.8 Plus
Blast to na_te.dros performed on 2015-02-08 07:18:29 has no hits.

BS15410.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:26:04 Download gff for BS15410.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2004-PA 380..1278 17..915 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:02:31 Download gff for BS15410.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2004-PA 380..1278 17..915 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 22:22:57 Download gff for BS15410.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2004-RC 616..1517 12..915 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 08:21:00 Download gff for BS15410.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2004-RD 705..1606 12..915 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 08:21:00 Download gff for BS15410.3prime
Subject Subject Range Query Range Percent Splice Strand
X 8712595..8713405 12..824 99 <- Plus
X 8713599..8713689 825..915 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 22:22:57 Download gff for BS15410.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8606628..8607438 12..824 99 <- Plus
arm_X 8607632..8607722 825..915 97   Plus

BS15410.5prime Sequence

808 bp (713 high quality bases) assembled on 2006-12-21

> BS15410.5prime
GAAGTTATCAGTCGACATGAGCACCTTTCCCAGCTTCGCGGACATTTCGG
CCAAATTCTCGGAGGCGACGCTGGACGAGATCATCCGAAACGCGGGCGGC
ACCCGGCACACCTCGTACAAATTTGGCCCAAGTGGCAAGAAGGGCGACGC
CTATCTGAGCCGTGTCTTCCGCATCACCATCTACGGCGTCAAGGAGGCGG
AAGAGGGCCAGGATGAGAAGCAACTAGAGATCAGTGTGATCGTGAAGGCC
ATGCCCGACAATCTGCACCGTCGGCGACTCTTCCGTTCGGTGATATTCTT
CCGCAACGAGATCAACTTCTACACCAAGGTGTTGCCGGCCATCGAGGCAT
TCCAGAAGTCCCGCCAGCCCGCGCCTAAGAAGCCCTTCGTGGAGTACCCC
CGCTGCCTGGCCAGCCTGTGCGATGGCGTCAACGATTTCATCGCCCTGGA
GGATGTGGGTCCCAGGGGCTACAGGGCACCTGTACGTCAAGACTACATTT
CGCTGGAAGATGCCCTGCTGACGATGCGGACCCTGGGTCGTTTCCATGGC
GTGGCCCTGGCCTTCAATGCCCTGGATAGCAAGAACTTCGAGAAGGCTGC
TGGTTCGCTGGAGGAGACCTACTATGGCGAACACACCCGCGAGTGGTACA
CGGGCTTCCTCCTGCTGGCGGAGAATGTGGCCACGGACGCCGTCAAGCAG
ATCTATCCGAATAGCAAATACGAGACTGTGGCCACAAACTTCCTGCAGCC
GCCGCTGTTCGATGATCTGATCAATCTGGTGTCCACTCGCTCCAAGTTGA
GTGTCTTC

BS15410.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:20:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG2004-PA 1278 CG2004-RA 1..792 17..808 3960 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 07:22:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG2004-RG 1920 CG2004-RG 517..1308 17..808 3960 100 Plus
CG2004-RF 1509 CG2004-RF 106..897 17..808 3960 100 Plus
CG2004-RD 1729 CG2004-RD 326..1117 17..808 3960 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 07:22:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8713599..8714068 486..17 2350 100 Minus
X 23542271 X 8713084..8713406 808..486 1615 100 Minus
Blast to na_te.dros performed on 2015-02-08 07:22:36 has no hits.

BS15410.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:26:04 Download gff for BS15410.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2004-PA 1..792 17..808 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:02:33 Download gff for BS15410.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2004-PA 1..792 17..808 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 22:23:40 Download gff for BS15410.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2004-RC 230..1028 9..808 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 08:21:42 Download gff for BS15410.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2004-RD 319..1117 9..808 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 08:21:42 Download gff for BS15410.5prime
Subject Subject Range Query Range Percent Splice Strand
X 8713084..8713405 487..808 100 <- Minus
X 8713599..8714072 9..486 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 22:23:40 Download gff for BS15410.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8607117..8607438 487..808 100 <- Minus
arm_X 8607632..8608105 9..486 99   Minus

BS15410.complete Sequence

1310 bp assembled on 2006-11-29

GenBank Submission: FJ637931

> BS15410.complete
GAAGTTATCAGTCGACATGAGCACCTTTCCCAGCTTCGCGGACATTTCGG
CCAAATTCTCGGAGGCGACGCTGGACGAGATCATCCGAAACGCGGGCGGC
ACCCGGCACACCTCGTACAAATTTGGCCCAAGTGGCAAGAAGGGCGACGC
CTATCTGAGCCGTGTCTTCCGCATCACCATCTACGGCGTCAAGGAGGCGG
AAGAGGGCCAGGATGAGAAGCAACTAGAGATCAGTGTGATCGTGAAGGCC
ATGCCCGACAATCTGCACCGTCGGCGACTCTTCCGTTCGGTGATATTCTT
CCGCAACGAGATCAACTTCTACACCAAGGTGTTGCCGGCCATCGAGGCAT
TCCAGAAGTCCCGCCAGCCCGCGCCTAAGAAGCCCTTCGTGGAGTACCCC
CGCTGCCTGGCCAGCCTGTGCGATGGCGTCAACGATTTCATCGCCCTGGA
GGATGTGGGTCCCAGGGGCTACAGGGCACCTGTACGTCAAGACTACATTT
CGCTGGAAGATGCCCTGCTGACGATGCGGACCCTGGGTCGTTTCCATGGC
GTGGCCCTGGCCTTCAATGCCCTGGATAGCAAGAACTTCGAGAAGGCTGC
TGGTTCGCTGGAGGAGACCTACTATGGCGAACACACCCGCGAGTGGTACA
CGGGCTTCCTCCTGCTGGCGGAGAATGTGGCCACGGACGCCGTCAAGCAG
ATCTATCCGAATAGCAAATACGAGACTGTGGCCACAAACTTCCTGCAGCC
GCCGCTGTTCGATGATCTGATCAATCTGGTGTCCACTCGCTCCAAGTTGA
GTGTCTTCGGGCACGGCGATTGCTGGACGCCCAACTTTCTGACCAAGTAC
AACGAACGGGGACAATCGGAGGAGATCATCATCATTGATTTCCAGTTGGC
CAGGTGCTCCTCCTTGGCCCTCGACCTGAGCTTCTTCATCTATTCCTGCA
CTAGCCAGGAGCTGAGGGAACAGCACTACGATGAGCTGCTCCGCGCCTAC
CTGGAGAGCGCCCAGGATTTGATTCAGGATCTCGGTGGCAATGCAGAGTC
TATCATCTCCTGGGAATCACTGCAAGAGGAGCTAAAGAACTTTGGTCGCT
TTGGTTGCGGCATGGGCATCGAATCGCTGCCGATGACGATGATGGAGGAC
GATGAGGTGGCCGATCTGGATGGAATCAAGGAGAACGCCATTCTCACCGA
CATCTGGAATATCACACCCTTCAAGGAGTCCGCCAAGCAGCAGCGACTGG
CTGATATCTTCAAGCACGCCATCGATCAGGGCTACATTAAGTGAAAGCTT
TCTAGACCAT

BS15410.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:02:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG2004-RG 1278 CG2004-PG 1..1278 17..1294 6390 100 Plus
CG2004-RF 1278 CG2004-PF 1..1278 17..1294 6390 100 Plus
CG2004-RD 1278 CG2004-PD 1..1278 17..1294 6390 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:02:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG2004-RG 1920 CG2004-RG 517..1794 17..1294 6390 100 Plus
CG2004-RF 1509 CG2004-RF 106..1383 17..1294 6390 100 Plus
CG2004-RD 1729 CG2004-RD 326..1603 17..1294 6390 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:02:18
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8712598..8713406 1294..486 4045 100 Minus
X 23542271 X 8713599..8714068 486..17 2350 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:02:18 has no hits.

BS15410.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:32:24 Download gff for BS15410.complete
Subject Subject Range Query Range Percent Splice Strand
CG2004-RA 1..1278 17..1294 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:04:53 Download gff for BS15410.complete
Subject Subject Range Query Range Percent Splice Strand
CG2004-RA 218..1505 9..1299 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:03:07 Download gff for BS15410.complete
Subject Subject Range Query Range Percent Splice Strand
CG2004-RC 237..1513 17..1293 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:32:24 Download gff for BS15410.complete
Subject Subject Range Query Range Percent Splice Strand
CG2004-RA 218..1505 9..1299 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:01:24 Download gff for BS15410.complete
Subject Subject Range Query Range Percent Splice Strand
CG2004-RD 326..1602 17..1293 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:01:24 Download gff for BS15410.complete
Subject Subject Range Query Range Percent Splice Strand
X 8712599..8713405 487..1293 100 <- Minus
X 8713599..8714068 17..486 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:03:07 Download gff for BS15410.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8606632..8607438 487..1293 100 <- Minus
arm_X 8607632..8608101 17..486 100   Minus

BS15410.pep Sequence

Translation from 16 to 1293

> BS15410.pep
MSTFPSFADISAKFSEATLDEIIRNAGGTRHTSYKFGPSGKKGDAYLSRV
FRITIYGVKEAEEGQDEKQLEISVIVKAMPDNLHRRRLFRSVIFFRNEIN
FYTKVLPAIEAFQKSRQPAPKKPFVEYPRCLASLCDGVNDFIALEDVGPR
GYRAPVRQDYISLEDALLTMRTLGRFHGVALAFNALDSKNFEKAAGSLEE
TYYGEHTREWYTGFLLLAENVATDAVKQIYPNSKYETVATNFLQPPLFDD
LINLVSTRSKLSVFGHGDCWTPNFLTKYNERGQSEEIIIIDFQLARCSSL
ALDLSFFIYSCTSQELREQHYDELLRAYLESAQDLIQDLGGNAESIISWE
SLQEELKNFGRFGCGMGIESLPMTMMEDDEVADLDGIKENAILTDIWNIT
PFKESAKQQRLADIFKHAIDQGYIK*

BS15410.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:23:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG2004-PG 425 CG2004-PG 1..425 1..425 2206 100 Plus
CG2004-PF 425 CG2004-PF 1..425 1..425 2206 100 Plus
CG2004-PD 425 CG2004-PD 1..425 1..425 2206 100 Plus
CG2004-PC 425 CG2004-PC 1..425 1..425 2206 100 Plus
CG2004-PA 425 CG2004-PA 1..425 1..425 2206 100 Plus