Clone Sequence Records
BS15412.complete Sequence
2030 bp assembled on 2009-12-07
GenBank Submission: KX802104
> BS15412.complete
GAAGTTATCAGTCGACATGGCCCCGGCTCTAAGCAAATTGGCCAACAACC
AGAGCGCCATCGTCGGCGTGGCGGGCATGACGGCGGCCCTCTGGATAATT
GCCTACGGAAAGATGTCCAACAAGAAGCGAAAACCCGGCTATGAGGACAA
GATCCAGTACACAATTGCCGAGAAGAAGGATAAGAAGGCGGGAAAGGCGC
ACGTTAACTCAGTATTCTTCAAACAGCTCCGCCAGCTACTCCCCATCCTC
ATTCCCGGCTTCTGGAGCGTGGAGACCGGACTGCTCTTCCTGGTGGCCGC
CGCACTGATTGGCCGCTCGGTGAGCGACATCTGGATGATCCAGAACGCGA
CGGTGGTGGAGAGCACCATCATACACATGAATCGCACCAAGTTCAAGACG
GCGCTGCTCAAATACCTGACAGCTCTGCCAGCGATCTCCGTTGTGACCAA
CGTCCTCAAGTGGAGCTTGGGTGAGTTGAAGCTGAGGTTCCGCACCAACC
TCACACACCACCTGTACAGTCAGTACCTAAACGGCTACACGTACTACAAA
ATGTCCAATCTGGACAATAGGATAGCCAACGCCGACCAGCTGCTGACCAC
GGACATCGACAAGTTCTGCGAGAGCGCCACGGACCTCTACTCCAACATCA
GCAAGCCCGTGCTGGACATCTTCATCTACGTGTACCGCCTGACGGTGAAC
CTGGGCGGCAAGACACCATCGATCCTGATGCTCTACCTGCTCTTCGCCGG
CGTCTTCCTGACACGCCTGCGCCGCCCCACTGGTCGCCTGACCGTCGAGG
AGCAGAAGCTGGAGGGCGAGTTCCGCTATGTGAACAGCCGACTGATCACC
AACTCGGAGGAGGTGGCCTTCTACCAGGGCAATGTGCGCGAGAAGCTCAC
CCTGCTGGCCAGCTACTCCAAGCTGCGTTCGCATCTGCGCAAGTTCCTCG
AGTTCCGCGTCAGCATGGGCATCATCGACAACATTATCGGCAAATATTTC
GCCTCCATTGTGGGCTTCTACGCCGTCTCCATTCCCTTCTTCTCCGAAAA
CCATCCGCTGCTGTCCGGTGAGAATAGCGGCCAGCGCCTGCAGGCCTACT
ACACCTACGGACGCATGCTGGTCAAGCTGGCGGAGGCCATCGGACGCCTG
GTGCTCGCTGGACGTGAGATGTCCCGCCTGGCCGGCTTCACCGCCCGCAT
GACCGAGCTAATTAAGGTTCTGAGCGACCTCAACAAGGGCACCTACGAAC
GCACCATGGTGAACGGCAACAACCTTGCGCAAAACGCCGTCGGATCGGCG
TCAAGCAACTTTGGACCAAACAAGGGCATCATGTGCTTCGAGGACAACAT
TATCCGCTTCGAAAAGGTGCCACTGGTGACGCCCAACGGCGATGTACTGC
TGCAGGAGCTGTCTTTTGAAGTGAAGTCTGGCACAAACGTCCTGGTCTGC
GGTCCCAACGGCTGTGGCAAGTCCTCCCTGTTTCGCATCCTCGGTGAGCT
GTGGCCGACGTGGGGCGGCAAAGTGACGAAACCGTCGCGCGGCAAGCTTT
TCTACGTACCTCAGAGGCCCTACATGACGCTGGGAACACTGCGTGACCAG
ATCATTTATCCACACACGCGCGATGACATGCGTCGCCTGGGACATAGCGA
CGAGGATCTCATGCACTACCTGGACATTGTGCAGCTGACCTACCTGGAGC
AGCGCGAGAACGGCCTGGACTCCATTGAGGACTGGATCGACGTGCTGTCC
GGCGGCGAGAAGCAGCGCATTGCGATGGCTAGGCTATTCTATCACAAGCC
GCAGTTCGCCATTTTGGACGAGTGCACCAGTGCCGTCTCCGTTGATGTGG
AGGGCAAGATGTACAGCTATTGCCGCGAGGTGGGCATCACGCTGTTTACG
GTCTCGCACCGCAAGTCGCTGTGGGCGCACCACGACTACTACCTCCAGTT
CGATGGCCGGGGCAGCTACGAGTTTGCGACCATCGATCAGGATAAGGACC
ACTTCGGTTCCTAAAAGCTTTCTAGACCAT
BS15412.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:14:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pmp70-RD | 1998 | CG12703-PD | 1..1998 | 17..2014 | 9990 | 100 | Plus |
Pmp70-RB | 1998 | CG12703-PB | 1..1998 | 17..2014 | 9990 | 100 | Plus |
Pmp70-RA | 1998 | CG12703-PA | 1..1998 | 17..2014 | 9990 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:14:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pmp70-RD | 3185 | CG12703-RD | 665..2664 | 17..2016 | 10000 | 100 | Plus |
Pmp70-RB | 2728 | CG12703-RB | 208..2207 | 17..2016 | 10000 | 100 | Plus |
Pmp70-RA | 2975 | CG12703-RA | 455..2454 | 17..2016 | 10000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:14:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19757034..19757497 | 532..995 | 2320 | 100 | Plus |
X | 23542271 | X | 19757568..19757999 | 996..1427 | 2160 | 100 | Plus |
X | 23542271 | X | 19758341..19758759 | 1598..2016 | 2095 | 100 | Plus |
X | 23542271 | X | 19756612..19756802 | 243..433 | 955 | 100 | Plus |
X | 23542271 | X | 19758102..19758276 | 1426..1600 | 875 | 100 | Plus |
X | 23542271 | X | 19756429..19756542 | 129..242 | 570 | 100 | Plus |
X | 23542271 | X | 19751434..19751546 | 17..129 | 565 | 100 | Plus |
X | 23542271 | X | 19756870..19756968 | 433..531 | 495 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:14:13 has no hits.
BS15412.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:47:15 Download gff for
BS15412.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12703-RA | 425..2420 | 17..2012 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:09:21 Download gff for
BS15412.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pmp70-RA | 455..2450 | 17..2012 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:11:35 Download gff for
BS15412.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12703-RA | 425..2420 | 17..2012 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:06:59 Download gff for
BS15412.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pmp70-RA | 455..2450 | 17..2012 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:06:59 Download gff for
BS15412.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19756430..19756542 | 130..242 | 100 | -> | Plus |
X | 19756612..19756802 | 243..433 | 100 | -> | Plus |
X | 19756871..19756968 | 434..531 | 100 | -> | Plus |
X | 19751434..19751546 | 17..129 | 100 | -> | Plus |
X | 19757034..19757497 | 532..995 | 100 | -> | Plus |
X | 19757568..19757997 | 996..1425 | 100 | -> | Plus |
X | 19758102..19758276 | 1426..1600 | 100 | -> | Plus |
X | 19758344..19758755 | 1601..2012 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:09:21 Download gff for
BS15412.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19650463..19650575 | 130..242 | 100 | -> | Plus |
arm_X | 19650645..19650835 | 243..433 | 100 | -> | Plus |
arm_X | 19650904..19651001 | 434..531 | 100 | -> | Plus |
arm_X | 19645467..19645579 | 17..129 | 100 | -> | Plus |
arm_X | 19651067..19651530 | 532..995 | 100 | -> | Plus |
arm_X | 19651601..19652030 | 996..1425 | 100 | -> | Plus |
arm_X | 19652135..19652309 | 1426..1600 | 100 | -> | Plus |
arm_X | 19652377..19652788 | 1601..2012 | 100 | | Plus |
BS15412.3prime Sequence
836 bp (768 high quality bases) assembled on 2006-12-21
> BS15412.3prime
ATGGTCTAGAAAGCTTTTACGAACCGAAGTGGTCCTTATCCTGATCGATG
GTCGCAAACTCGTAGCTGCCCCGGCCATCGAACTGGAGGTAGTAGTCGTG
GTGCGCCCACAGCGACTTGCGGTGCGAGACCGTAAACAGCGTGATGCCCA
CCTCGCGGCAATAGCTGTACATCTTGCCCTCCACATCAACGGAGACGGCA
CTGGTGCACTCGTCCAAAATGGCGAACTGCGGCTTGTGATAGAATAGCCT
AGCCATCGCAATGCGCTGCTTCTCGCCGCCGGACAGCACGTCGATCCAGT
CCTCAATGGAGTCCAGGCCGTTCTCGCGCTGCTCCAGGTAGGTCAGCTGC
ACAATGTCCAGGTAGTGCATGAGATCCTCGTCGCTATGTCCCAGGCGACG
CATGTCATCGCGCGTGTGTGGATAAATGATCTGGTCACGCAGTGTTCCCA
GCGTCATGTAGGGCCTCTGAGGTACGTAGAAAAGCTTGCCGCGCGACGGT
TTCGTCACTTTGCCGCCCCACGTCGGCCACAGCTCACCGAGGATGCGAAA
CAGGGAGGACTTGCCACAGCCGTTGGGACCGCAGACCAGGACGTTTGTGC
CAGACTTCACTTCAAAAGACAGCTCCTGCAGCAGTACATCGCCGTTGGGC
GTCACCAGTGGCACCTTTTCGAAGCGGATAATGTTGTCCTCGAAGCACAT
GATGCCCTTGTTTGGTCCAAAGTTGCTTGACGCCGATCCGACGGCGTTTT
GCGCAAGGTTGTTGCCGTTCACCATGGTGCGTTCGTAGGTGCCCTTGTTG
AGGTCGCTCAGAACCTTAATTAGCTCGGTCATGCGG
BS15412.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:20:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12703-PA | 1998 | CG12703-RA | 1179..1994 | 836..21 | 4080 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:20:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pmp70-RD | 3185 | CG12703-RD | 1843..2664 | 836..15 | 4095 | 99.9 | Minus |
Pmp70-RC | 2882 | CG12703-RC | 1540..2361 | 836..15 | 4095 | 99.9 | Minus |
Pmp70-RB | 2728 | CG12703-RB | 1386..2207 | 836..15 | 4095 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:20:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19758341..19758759 | 433..15 | 2080 | 99.8 | Minus |
X | 23542271 | X | 19757767..19757999 | 836..604 | 1165 | 100 | Minus |
X | 23542271 | X | 19758102..19758276 | 605..431 | 875 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 09:20:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dm88 | 4558 | Dm88 DM88 4558bp | 3886..3916 | 645..615 | 110 | 83.9 | Minus |
BS15412.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:26:06 Download gff for
BS15412.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12703-PA | 1179..1998 | 17..836 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:02:37 Download gff for
BS15412.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12703-PA | 1179..1998 | 17..836 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 13:14:44 Download gff for
BS15412.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pmp70-RB | 1386..2209 | 12..836 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:32:21 Download gff for
BS15412.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pmp70-RB | 1386..2209 | 12..836 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:32:21 Download gff for
BS15412.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19757767..19757997 | 606..836 | 100 | -> | Minus |
X | 19758102..19758276 | 431..605 | 100 | -> | Minus |
X | 19758344..19758761 | 12..430 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 13:14:44 Download gff for
BS15412.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19651800..19652030 | 606..836 | 100 | -> | Minus |
arm_X | 19652135..19652309 | 431..605 | 100 | -> | Minus |
arm_X | 19652377..19652794 | 12..430 | 99 | | Minus |
BS15412.5prime Sequence
774 bp (772 high quality bases) assembled on 2006-12-21
> BS15412.5prime
GAAGTTATCCGTCGACATGGCCCCGGCTCTAAGCAAATTGGCCAACAACC
AGAGCGCCATCGTCGGCGTGGCGGGCATGACGGCGGCCCTCTGGATAATT
GCCTACGGAAAGATGTCCAACAAGAAGCGAAAACCCGGCTATGAGGACAA
GATCCAGTACACAATTGCCGAGAAGAAGGATAAGAAGGCGGGAAAGGCGC
ACGTTAACTCAGTATTCTTCAAACAGCTCCGCCAGCTACTCCCCATCCTC
ATTCCCGGCTTCTGGAGCGTGGAGACCGGACTGCTCTTCCTGGTGGCCGC
CGCACTGATTGGCCGCTCGGTGAGCGACATCTGGATGATCCAGAACGCGA
CGGTGGTGGAGAGCACCATCATACACATGAATCGCACCAAGTTCAAGACG
GCGCTGCTCAAATACCTGACAGCTCTGCCAGCGATCTCCGTTGTGACCAA
CGTCCTCAAGTGGAGCTTGGGTGAGTTGAAGCTGAGGTTCCGCACCAACC
TCACACACCACCTGTACAGTCAGTACCTAAACGGCTACACGTACTACAAA
ATGTCCAATCTGGACAATAGGATAGCCAACGCCGACCAGCTGCTGACCAC
GGACATCGACAAGTTCTGCGAGAGCGCCACGGACCTCTACTCCAACATCA
GCAAGCCCGTGCTGGACATCTTCATCTACGTGTACCGCCTGACGGTGAAC
CTGGGCGGCAAGACACCATCGATCCTGATGCTCTACCTGCTCTTCGCCGG
CGTCTTCCTGACACGCCTGCGCCG
BS15412.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:20:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12703-PA | 1998 | CG12703-RA | 1..758 | 17..774 | 3790 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 07:24:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pmp70-RD | 3185 | CG12703-RD | 665..1422 | 17..774 | 3790 | 100 | Plus |
Pmp70-RB | 2728 | CG12703-RB | 208..965 | 17..774 | 3790 | 100 | Plus |
Pmp70-RA | 2975 | CG12703-RA | 455..1212 | 17..774 | 3790 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 07:23:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19757034..19757276 | 532..774 | 1215 | 100 | Plus |
X | 23542271 | X | 19756612..19756802 | 243..433 | 955 | 100 | Plus |
X | 23542271 | X | 19756429..19756542 | 129..242 | 570 | 100 | Plus |
X | 23542271 | X | 19751434..19751546 | 17..129 | 565 | 100 | Plus |
X | 23542271 | X | 19756870..19756968 | 433..531 | 495 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 07:23:56 has no hits.
BS15412.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:26:07 Download gff for
BS15412.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12703-PA | 1..758 | 17..774 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:02:38 Download gff for
BS15412.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12703-PA | 1..758 | 17..774 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 22:23:54 Download gff for
BS15412.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pmp70-RA | 453..1212 | 14..774 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 08:21:55 Download gff for
BS15412.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pmp70-RA | 453..1212 | 14..774 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 08:21:55 Download gff for
BS15412.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19756612..19756802 | 243..433 | 100 | -> | Plus |
X | 19756871..19756968 | 434..531 | 100 | -> | Plus |
X | 19757034..19757276 | 532..774 | 100 | | Plus |
X | 19751432..19751546 | 14..129 | 99 | -> | Plus |
X | 19756430..19756542 | 130..242 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 22:23:54 Download gff for
BS15412.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19645465..19645579 | 14..129 | 99 | -> | Plus |
arm_X | 19650463..19650575 | 130..242 | 100 | -> | Plus |
arm_X | 19650645..19650835 | 243..433 | 100 | -> | Plus |
arm_X | 19650904..19651001 | 434..531 | 100 | -> | Plus |
arm_X | 19651067..19651309 | 532..774 | 100 | | Plus |
BS15412.pep Sequence
Translation from 16 to 2013
> BS15412.pep
MAPALSKLANNQSAIVGVAGMTAALWIIAYGKMSNKKRKPGYEDKIQYTI
AEKKDKKAGKAHVNSVFFKQLRQLLPILIPGFWSVETGLLFLVAAALIGR
SVSDIWMIQNATVVESTIIHMNRTKFKTALLKYLTALPAISVVTNVLKWS
LGELKLRFRTNLTHHLYSQYLNGYTYYKMSNLDNRIANADQLLTTDIDKF
CESATDLYSNISKPVLDIFIYVYRLTVNLGGKTPSILMLYLLFAGVFLTR
LRRPTGRLTVEEQKLEGEFRYVNSRLITNSEEVAFYQGNVREKLTLLASY
SKLRSHLRKFLEFRVSMGIIDNIIGKYFASIVGFYAVSIPFFSENHPLLS
GENSGQRLQAYYTYGRMLVKLAEAIGRLVLAGREMSRLAGFTARMTELIK
VLSDLNKGTYERTMVNGNNLAQNAVGSASSNFGPNKGIMCFEDNIIRFEK
VPLVTPNGDVLLQELSFEVKSGTNVLVCGPNGCGKSSLFRILGELWPTWG
GKVTKPSRGKLFYVPQRPYMTLGTLRDQIIYPHTRDDMRRLGHSDEDLMH
YLDIVQLTYLEQRENGLDSIEDWIDVLSGGEKQRIAMARLFYHKPQFAIL
DECTSAVSVDVEGKMYSYCREVGITLFTVSHRKSLWAHHDYYLQFDGRGS
YEFATIDQDKDHFGS*
BS15412.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:47:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pmp70-PD | 665 | CG12703-PD | 1..665 | 1..665 | 3435 | 100 | Plus |
Pmp70-PB | 665 | CG12703-PB | 1..665 | 1..665 | 3435 | 100 | Plus |
Pmp70-PA | 665 | CG12703-PA | 1..665 | 1..665 | 3435 | 100 | Plus |
Pmp70-PC | 641 | CG12703-PC | 15..641 | 39..665 | 3248 | 100 | Plus |
CG2316-PH | 730 | CG2316-PH | 64..726 | 31..664 | 1014 | 35.9 | Plus |