Clone BS15412 Report

Search the DGRC for BS15412

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:154
Well:12
Vector:pDNR-Dual
Associated Gene/TranscriptPmp70-RA
Protein status:BS15412.pep: full length peptide match
Sequenced Size:2030

Clone Sequence Records

BS15412.complete Sequence

2030 bp assembled on 2009-12-07

GenBank Submission: KX802104

> BS15412.complete
GAAGTTATCAGTCGACATGGCCCCGGCTCTAAGCAAATTGGCCAACAACC
AGAGCGCCATCGTCGGCGTGGCGGGCATGACGGCGGCCCTCTGGATAATT
GCCTACGGAAAGATGTCCAACAAGAAGCGAAAACCCGGCTATGAGGACAA
GATCCAGTACACAATTGCCGAGAAGAAGGATAAGAAGGCGGGAAAGGCGC
ACGTTAACTCAGTATTCTTCAAACAGCTCCGCCAGCTACTCCCCATCCTC
ATTCCCGGCTTCTGGAGCGTGGAGACCGGACTGCTCTTCCTGGTGGCCGC
CGCACTGATTGGCCGCTCGGTGAGCGACATCTGGATGATCCAGAACGCGA
CGGTGGTGGAGAGCACCATCATACACATGAATCGCACCAAGTTCAAGACG
GCGCTGCTCAAATACCTGACAGCTCTGCCAGCGATCTCCGTTGTGACCAA
CGTCCTCAAGTGGAGCTTGGGTGAGTTGAAGCTGAGGTTCCGCACCAACC
TCACACACCACCTGTACAGTCAGTACCTAAACGGCTACACGTACTACAAA
ATGTCCAATCTGGACAATAGGATAGCCAACGCCGACCAGCTGCTGACCAC
GGACATCGACAAGTTCTGCGAGAGCGCCACGGACCTCTACTCCAACATCA
GCAAGCCCGTGCTGGACATCTTCATCTACGTGTACCGCCTGACGGTGAAC
CTGGGCGGCAAGACACCATCGATCCTGATGCTCTACCTGCTCTTCGCCGG
CGTCTTCCTGACACGCCTGCGCCGCCCCACTGGTCGCCTGACCGTCGAGG
AGCAGAAGCTGGAGGGCGAGTTCCGCTATGTGAACAGCCGACTGATCACC
AACTCGGAGGAGGTGGCCTTCTACCAGGGCAATGTGCGCGAGAAGCTCAC
CCTGCTGGCCAGCTACTCCAAGCTGCGTTCGCATCTGCGCAAGTTCCTCG
AGTTCCGCGTCAGCATGGGCATCATCGACAACATTATCGGCAAATATTTC
GCCTCCATTGTGGGCTTCTACGCCGTCTCCATTCCCTTCTTCTCCGAAAA
CCATCCGCTGCTGTCCGGTGAGAATAGCGGCCAGCGCCTGCAGGCCTACT
ACACCTACGGACGCATGCTGGTCAAGCTGGCGGAGGCCATCGGACGCCTG
GTGCTCGCTGGACGTGAGATGTCCCGCCTGGCCGGCTTCACCGCCCGCAT
GACCGAGCTAATTAAGGTTCTGAGCGACCTCAACAAGGGCACCTACGAAC
GCACCATGGTGAACGGCAACAACCTTGCGCAAAACGCCGTCGGATCGGCG
TCAAGCAACTTTGGACCAAACAAGGGCATCATGTGCTTCGAGGACAACAT
TATCCGCTTCGAAAAGGTGCCACTGGTGACGCCCAACGGCGATGTACTGC
TGCAGGAGCTGTCTTTTGAAGTGAAGTCTGGCACAAACGTCCTGGTCTGC
GGTCCCAACGGCTGTGGCAAGTCCTCCCTGTTTCGCATCCTCGGTGAGCT
GTGGCCGACGTGGGGCGGCAAAGTGACGAAACCGTCGCGCGGCAAGCTTT
TCTACGTACCTCAGAGGCCCTACATGACGCTGGGAACACTGCGTGACCAG
ATCATTTATCCACACACGCGCGATGACATGCGTCGCCTGGGACATAGCGA
CGAGGATCTCATGCACTACCTGGACATTGTGCAGCTGACCTACCTGGAGC
AGCGCGAGAACGGCCTGGACTCCATTGAGGACTGGATCGACGTGCTGTCC
GGCGGCGAGAAGCAGCGCATTGCGATGGCTAGGCTATTCTATCACAAGCC
GCAGTTCGCCATTTTGGACGAGTGCACCAGTGCCGTCTCCGTTGATGTGG
AGGGCAAGATGTACAGCTATTGCCGCGAGGTGGGCATCACGCTGTTTACG
GTCTCGCACCGCAAGTCGCTGTGGGCGCACCACGACTACTACCTCCAGTT
CGATGGCCGGGGCAGCTACGAGTTTGCGACCATCGATCAGGATAAGGACC
ACTTCGGTTCCTAAAAGCTTTCTAGACCAT

BS15412.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:14:14
Subject Length Description Subject Range Query Range Score Percent Strand
Pmp70-RD 1998 CG12703-PD 1..1998 17..2014 9990 100 Plus
Pmp70-RB 1998 CG12703-PB 1..1998 17..2014 9990 100 Plus
Pmp70-RA 1998 CG12703-PA 1..1998 17..2014 9990 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:14:16
Subject Length Description Subject Range Query Range Score Percent Strand
Pmp70-RD 3185 CG12703-RD 665..2664 17..2016 10000 100 Plus
Pmp70-RB 2728 CG12703-RB 208..2207 17..2016 10000 100 Plus
Pmp70-RA 2975 CG12703-RA 455..2454 17..2016 10000 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:14:12
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19757034..19757497 532..995 2320 100 Plus
X 23542271 X 19757568..19757999 996..1427 2160 100 Plus
X 23542271 X 19758341..19758759 1598..2016 2095 100 Plus
X 23542271 X 19756612..19756802 243..433 955 100 Plus
X 23542271 X 19758102..19758276 1426..1600 875 100 Plus
X 23542271 X 19756429..19756542 129..242 570 100 Plus
X 23542271 X 19751434..19751546 17..129 565 100 Plus
X 23542271 X 19756870..19756968 433..531 495 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:14:13 has no hits.

BS15412.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:47:15 Download gff for BS15412.complete
Subject Subject Range Query Range Percent Splice Strand
CG12703-RA 425..2420 17..2012 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:09:21 Download gff for BS15412.complete
Subject Subject Range Query Range Percent Splice Strand
Pmp70-RA 455..2450 17..2012 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:11:35 Download gff for BS15412.complete
Subject Subject Range Query Range Percent Splice Strand
CG12703-RA 425..2420 17..2012 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:06:59 Download gff for BS15412.complete
Subject Subject Range Query Range Percent Splice Strand
Pmp70-RA 455..2450 17..2012 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:06:59 Download gff for BS15412.complete
Subject Subject Range Query Range Percent Splice Strand
X 19756430..19756542 130..242 100 -> Plus
X 19756612..19756802 243..433 100 -> Plus
X 19756871..19756968 434..531 100 -> Plus
X 19751434..19751546 17..129 100 -> Plus
X 19757034..19757497 532..995 100 -> Plus
X 19757568..19757997 996..1425 100 -> Plus
X 19758102..19758276 1426..1600 100 -> Plus
X 19758344..19758755 1601..2012 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:09:21 Download gff for BS15412.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19650463..19650575 130..242 100 -> Plus
arm_X 19650645..19650835 243..433 100 -> Plus
arm_X 19650904..19651001 434..531 100 -> Plus
arm_X 19645467..19645579 17..129 100 -> Plus
arm_X 19651067..19651530 532..995 100 -> Plus
arm_X 19651601..19652030 996..1425 100 -> Plus
arm_X 19652135..19652309 1426..1600 100 -> Plus
arm_X 19652377..19652788 1601..2012 100   Plus

BS15412.3prime Sequence

836 bp (768 high quality bases) assembled on 2006-12-21

> BS15412.3prime
ATGGTCTAGAAAGCTTTTACGAACCGAAGTGGTCCTTATCCTGATCGATG
GTCGCAAACTCGTAGCTGCCCCGGCCATCGAACTGGAGGTAGTAGTCGTG
GTGCGCCCACAGCGACTTGCGGTGCGAGACCGTAAACAGCGTGATGCCCA
CCTCGCGGCAATAGCTGTACATCTTGCCCTCCACATCAACGGAGACGGCA
CTGGTGCACTCGTCCAAAATGGCGAACTGCGGCTTGTGATAGAATAGCCT
AGCCATCGCAATGCGCTGCTTCTCGCCGCCGGACAGCACGTCGATCCAGT
CCTCAATGGAGTCCAGGCCGTTCTCGCGCTGCTCCAGGTAGGTCAGCTGC
ACAATGTCCAGGTAGTGCATGAGATCCTCGTCGCTATGTCCCAGGCGACG
CATGTCATCGCGCGTGTGTGGATAAATGATCTGGTCACGCAGTGTTCCCA
GCGTCATGTAGGGCCTCTGAGGTACGTAGAAAAGCTTGCCGCGCGACGGT
TTCGTCACTTTGCCGCCCCACGTCGGCCACAGCTCACCGAGGATGCGAAA
CAGGGAGGACTTGCCACAGCCGTTGGGACCGCAGACCAGGACGTTTGTGC
CAGACTTCACTTCAAAAGACAGCTCCTGCAGCAGTACATCGCCGTTGGGC
GTCACCAGTGGCACCTTTTCGAAGCGGATAATGTTGTCCTCGAAGCACAT
GATGCCCTTGTTTGGTCCAAAGTTGCTTGACGCCGATCCGACGGCGTTTT
GCGCAAGGTTGTTGCCGTTCACCATGGTGCGTTCGTAGGTGCCCTTGTTG
AGGTCGCTCAGAACCTTAATTAGCTCGGTCATGCGG

BS15412.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:20:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG12703-PA 1998 CG12703-RA 1179..1994 836..21 4080 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:20:49
Subject Length Description Subject Range Query Range Score Percent Strand
Pmp70-RD 3185 CG12703-RD 1843..2664 836..15 4095 99.9 Minus
Pmp70-RC 2882 CG12703-RC 1540..2361 836..15 4095 99.9 Minus
Pmp70-RB 2728 CG12703-RB 1386..2207 836..15 4095 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:20:47
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19758341..19758759 433..15 2080 99.8 Minus
X 23542271 X 19757767..19757999 836..604 1165 100 Minus
X 23542271 X 19758102..19758276 605..431 875 100 Minus
Blast to na_te.dros performed 2015-02-11 09:20:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dm88 4558 Dm88 DM88 4558bp 3886..3916 645..615 110 83.9 Minus

BS15412.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:26:06 Download gff for BS15412.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12703-PA 1179..1998 17..836 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:02:37 Download gff for BS15412.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12703-PA 1179..1998 17..836 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 13:14:44 Download gff for BS15412.3prime
Subject Subject Range Query Range Percent Splice Strand
Pmp70-RB 1386..2209 12..836 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:32:21 Download gff for BS15412.3prime
Subject Subject Range Query Range Percent Splice Strand
Pmp70-RB 1386..2209 12..836 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:32:21 Download gff for BS15412.3prime
Subject Subject Range Query Range Percent Splice Strand
X 19757767..19757997 606..836 100 -> Minus
X 19758102..19758276 431..605 100 -> Minus
X 19758344..19758761 12..430 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 13:14:44 Download gff for BS15412.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19651800..19652030 606..836 100 -> Minus
arm_X 19652135..19652309 431..605 100 -> Minus
arm_X 19652377..19652794 12..430 99   Minus

BS15412.5prime Sequence

774 bp (772 high quality bases) assembled on 2006-12-21

> BS15412.5prime
GAAGTTATCCGTCGACATGGCCCCGGCTCTAAGCAAATTGGCCAACAACC
AGAGCGCCATCGTCGGCGTGGCGGGCATGACGGCGGCCCTCTGGATAATT
GCCTACGGAAAGATGTCCAACAAGAAGCGAAAACCCGGCTATGAGGACAA
GATCCAGTACACAATTGCCGAGAAGAAGGATAAGAAGGCGGGAAAGGCGC
ACGTTAACTCAGTATTCTTCAAACAGCTCCGCCAGCTACTCCCCATCCTC
ATTCCCGGCTTCTGGAGCGTGGAGACCGGACTGCTCTTCCTGGTGGCCGC
CGCACTGATTGGCCGCTCGGTGAGCGACATCTGGATGATCCAGAACGCGA
CGGTGGTGGAGAGCACCATCATACACATGAATCGCACCAAGTTCAAGACG
GCGCTGCTCAAATACCTGACAGCTCTGCCAGCGATCTCCGTTGTGACCAA
CGTCCTCAAGTGGAGCTTGGGTGAGTTGAAGCTGAGGTTCCGCACCAACC
TCACACACCACCTGTACAGTCAGTACCTAAACGGCTACACGTACTACAAA
ATGTCCAATCTGGACAATAGGATAGCCAACGCCGACCAGCTGCTGACCAC
GGACATCGACAAGTTCTGCGAGAGCGCCACGGACCTCTACTCCAACATCA
GCAAGCCCGTGCTGGACATCTTCATCTACGTGTACCGCCTGACGGTGAAC
CTGGGCGGCAAGACACCATCGATCCTGATGCTCTACCTGCTCTTCGCCGG
CGTCTTCCTGACACGCCTGCGCCG

BS15412.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:20:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG12703-PA 1998 CG12703-RA 1..758 17..774 3790 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 07:24:00
Subject Length Description Subject Range Query Range Score Percent Strand
Pmp70-RD 3185 CG12703-RD 665..1422 17..774 3790 100 Plus
Pmp70-RB 2728 CG12703-RB 208..965 17..774 3790 100 Plus
Pmp70-RA 2975 CG12703-RA 455..1212 17..774 3790 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 07:23:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19757034..19757276 532..774 1215 100 Plus
X 23542271 X 19756612..19756802 243..433 955 100 Plus
X 23542271 X 19756429..19756542 129..242 570 100 Plus
X 23542271 X 19751434..19751546 17..129 565 100 Plus
X 23542271 X 19756870..19756968 433..531 495 100 Plus
Blast to na_te.dros performed on 2015-02-08 07:23:56 has no hits.

BS15412.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:26:07 Download gff for BS15412.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12703-PA 1..758 17..774 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:02:38 Download gff for BS15412.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12703-PA 1..758 17..774 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 22:23:54 Download gff for BS15412.5prime
Subject Subject Range Query Range Percent Splice Strand
Pmp70-RA 453..1212 14..774 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 08:21:55 Download gff for BS15412.5prime
Subject Subject Range Query Range Percent Splice Strand
Pmp70-RA 453..1212 14..774 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 08:21:55 Download gff for BS15412.5prime
Subject Subject Range Query Range Percent Splice Strand
X 19756612..19756802 243..433 100 -> Plus
X 19756871..19756968 434..531 100 -> Plus
X 19757034..19757276 532..774 100   Plus
X 19751432..19751546 14..129 99 -> Plus
X 19756430..19756542 130..242 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 22:23:54 Download gff for BS15412.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19645465..19645579 14..129 99 -> Plus
arm_X 19650463..19650575 130..242 100 -> Plus
arm_X 19650645..19650835 243..433 100 -> Plus
arm_X 19650904..19651001 434..531 100 -> Plus
arm_X 19651067..19651309 532..774 100   Plus

BS15412.pep Sequence

Translation from 16 to 2013

> BS15412.pep
MAPALSKLANNQSAIVGVAGMTAALWIIAYGKMSNKKRKPGYEDKIQYTI
AEKKDKKAGKAHVNSVFFKQLRQLLPILIPGFWSVETGLLFLVAAALIGR
SVSDIWMIQNATVVESTIIHMNRTKFKTALLKYLTALPAISVVTNVLKWS
LGELKLRFRTNLTHHLYSQYLNGYTYYKMSNLDNRIANADQLLTTDIDKF
CESATDLYSNISKPVLDIFIYVYRLTVNLGGKTPSILMLYLLFAGVFLTR
LRRPTGRLTVEEQKLEGEFRYVNSRLITNSEEVAFYQGNVREKLTLLASY
SKLRSHLRKFLEFRVSMGIIDNIIGKYFASIVGFYAVSIPFFSENHPLLS
GENSGQRLQAYYTYGRMLVKLAEAIGRLVLAGREMSRLAGFTARMTELIK
VLSDLNKGTYERTMVNGNNLAQNAVGSASSNFGPNKGIMCFEDNIIRFEK
VPLVTPNGDVLLQELSFEVKSGTNVLVCGPNGCGKSSLFRILGELWPTWG
GKVTKPSRGKLFYVPQRPYMTLGTLRDQIIYPHTRDDMRRLGHSDEDLMH
YLDIVQLTYLEQRENGLDSIEDWIDVLSGGEKQRIAMARLFYHKPQFAIL
DECTSAVSVDVEGKMYSYCREVGITLFTVSHRKSLWAHHDYYLQFDGRGS
YEFATIDQDKDHFGS*

BS15412.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:47:29
Subject Length Description Subject Range Query Range Score Percent Strand
Pmp70-PD 665 CG12703-PD 1..665 1..665 3435 100 Plus
Pmp70-PB 665 CG12703-PB 1..665 1..665 3435 100 Plus
Pmp70-PA 665 CG12703-PA 1..665 1..665 3435 100 Plus
Pmp70-PC 641 CG12703-PC 15..641 39..665 3248 100 Plus
CG2316-PH 730 CG2316-PH 64..726 31..664 1014 35.9 Plus