Clone Sequence Records
BS15413.5prime Sequence
206 bp (122 high quality bases) assembled on 2006-12-21
> BS15413.5prime
GAAGTTATCCCTTGACATGGGGCGATTTAAGTTATGTGCTTCGCCGAGAG
AGGTTATGAAGTACGAAGACTTTATAAAACGCATTCGAAAAAGCCTCTAC
TATGGCGTTGGAACACCAGACACAGAAATGTCGGTCTCCTTACCCTTTGC
GGAGTACGCGGCAGATTTGTTTTCGGAGACTCATCGCGGGCATTCTTGCA
TCGCCT
BS15413.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 19:20:23 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:52:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40191-RC | 1518 | CG40191-RC | 246..436 | 17..206 | 930 | 99.5 | Plus |
CG40191-RD | 1386 | CG40191-RD | 66..256 | 17..206 | 930 | 99.5 | Plus |
CG40191-RA | 2923 | CG40191-RA | 66..256 | 17..206 | 930 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:52:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 1264546..1264692 | 51..197 | 735 | 100 | Plus |
2R | 25286936 | 2R | 1264458..1264495 | 17..54 | 190 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:52:53 has no hits.
BS15413.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 23:21:23 Download gff for
BS15413.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40191-RA | 63..256 | 14..206 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:59:56 Download gff for
BS15413.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40191-RA | 63..256 | 14..206 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:59:56 Download gff for
BS15413.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 1264455..1264493 | 14..52 | 97 | -> | Plus |
2R | 1264548..1264702 | 53..206 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 23:21:23 Download gff for
BS15413.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2RHet | 391088..391126 | 14..52 | 97 | -> | Plus |
2RHet | 391181..391335 | 53..206 | 99 | | Plus |
BS15413.3prime Sequence
894 bp (705 high quality bases) assembled on 2006-12-21
> BS15413.3prime
ATGGTCTAGAAAGCTTTTACTGCATTGCTTCGGTGTTGGCTTGCCAAATA
ACGGAATCATTTTCAGCCTTTTGCTCTTCTAGTTGTACGGATCTAACTGT
TATTGAAAGGTTTCTGTTGTTTTTGTAGTCGCTGTTGGGCGATTTAATAT
TTAGCCAATTCCTTGTTCCATCTTGGGCATACAATAAATCAAGTTGTGGA
CAGGTGCTTATGAATGAAAGCGTAGGTACTGATTGATGGCGCGGATGCTT
ATATTCAATTTTATTCAGTCTTGCCCTGGCGCAGCTTGTCTTCTCAAGAT
TCATCAATTCAACATTCACGTTACTCGTTTTACGTAAAAGTGAGGATACT
TGGACATTAATAAAAGGTGTGGACTCTAATGCATTTGAAACGGATACCTG
ACTGCTAATTGTCATGGTGAAATCTGAGGCAGTTTCCACATCCCGATGCC
ATAACGTACCGGGAACTTGGCTCGCAATAAAAAAAGCTCCGGCTAATGTT
ATAATACTTGCCGCATAGCTTAGAGATAGTACAGACAGGCTGTTAACGAG
GAATTTCGTCCATTCAAGGCTAGGCAGCAACTGCACGAGCTCACTGTAAG
TGAGCCAACCTCTACGCAGTCCCTGCTGTTCAGCCAAAGAACGTTCAACG
TTTCTTAACTTATCAAAGAATAGCTCATTGGATATGTATATATTCCAACC
CATAGCGGAAAGAAATTCGAGCTCGACTGCCTTGAGCCTATCTTCCGTCA
TACAAGCGTCACTGGCCCAGTCTTCCAGATAGAACCGTTCGTCGTGGCCC
GCGTAGAATTTTGTGGAAATCATTAGTGACACAACAAACAGCTGCTGTGG
TGTGATTCTGCAGCTATAGCCCGAGTCGATGACGTTTAAGCGAT
BS15413.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 19:20:23 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 23:55:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40191-RC | 1518 | CG40191-RC | 505..1382 | 894..17 | 4390 | 100 | Minus |
CG40191-RD | 1386 | CG40191-RD | 325..1202 | 894..17 | 4390 | 100 | Minus |
CG40191-RA | 2923 | CG40191-RA | 325..1202 | 894..17 | 4390 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 23:55:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 1265342..1266026 | 701..17 | 3425 | 100 | Minus |
2R | 25286936 | 2R | 1265171..1265294 | 823..700 | 620 | 100 | Minus |
2R | 25286936 | 2R | 1264771..1264841 | 894..824 | 355 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-05 23:55:15 has no hits.
BS15413.3prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 03:33:25 Download gff for
BS15413.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40191-RA | 325..1211 | 7..894 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 00:33:58 Download gff for
BS15413.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40191-RA | 325..1211 | 7..894 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 00:33:58 Download gff for
BS15413.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 1264771..1264841 | 824..894 | 100 | -> | Minus |
2R | 1265171..1265293 | 701..823 | 100 | -> | Minus |
2R | 1265343..1266035 | 7..700 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 03:33:25 Download gff for
BS15413.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2RHet | 391404..391474 | 824..894 | 100 | -> | Minus |
2RHet | 391804..391926 | 701..823 | 100 | -> | Minus |
2RHet | 391976..392668 | 7..700 | 99 | | Minus |
BS15413.complete Sequence
1169 bp assembled on 2009-08-24
GenBank Submission: KX801720
> BS15413.complete
GAAGTTATCAGTCGACATGGGGCGATTTAAGTTATGTGCTTCGCCGAGAG
AGGTTATGAAGTACGAAGACTTTATAAAACGCATTCGAAAAAGCCTCTAC
TATGGCGTTGGAACACCAGACACAGAAATGTCGGTCTCCTTACCCTTTGC
GGAGTACGCGGCAGATTTGTTTTCGGAGACTCATCGCGGGCATTCTTTGC
ATCGCCTAAGTTGCGTATCTGCTGCACAAGTACATGCCACGCCTTGCTCT
TTAATTATGGCATTGATATACCTCGATCGCTTAAACGTCATCGACTCGGG
CTATAGCTGCAGAATCACACCACAGCAGCTGTTTGTTGTGTCACTAATGA
TTTCCACAAAATTCTACGCGGGCCACGACGAACGGTTCTATCTGGAAGAC
TGGGCCAGTGACGCTTGTATGACGGAAGATAGGCTCAAGGCAGTCGAGCT
CGAATTTCTTTCCGCTATGGGTTGGAATATATACATATCCAATGAGCTAT
TCTTTGATAAGTTAAGAAACGTTGAACGTTCTTTGGCTGAACAGCAGGGA
CTGCGTAGAGGTTGGCTCACTTACAGTGAGCTCGTGCAGTTGCTGCCTAG
CCTTGAATGGACGAAATTCCTCGTTAACAGCCTGTCTGTACTATCTCTAA
GCTATGCGGCAAGTATTATAACATTAGCCGGAGCTTTTTTTATTGCGAGC
CAAGTTCCCGGTACGTTATGGCATCGGGATGTGGAAACTGCCTCAGATTT
CACCATGACAATTAGCAGTCAGGTATCCGTTTCAAATGCATTAGAGTCCA
CACCTTTTATTAATGTCCAAGTATCCTCACTTTTACGTAAAACGAGTAAC
GTGAATGTTGAATTGATGAATCTTGAGAAGACAAGCTGCGCCAGGGCAAG
ACTGAATAAAATTGAATATAAGCATCCGCGCCATCAATCAGTACCTACGC
TTTCATTCATAAGCACCTGTCCACAACTTGATTTATTGTATGCCCAAGAT
GGAACAAGGAATTGGCTAAATATTAAATCGCCCAACAGCGACTACAAAAA
CAACAGAAACCTTTCAATAACAGTTAGATCCGTACAACTAGAAGAGCAAA
AGGCTGAAAATGATTCCGTTATTTGGCAAGCCAACACCGAAGCAATGCAG
TAAAAGCTTTCTAGACCAT
BS15413.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:36:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40191-RC | 1137 | CG40191-PC | 1..1137 | 17..1153 | 5685 | 100 | Plus |
CG40191-RD | 1137 | CG40191-PD | 1..1137 | 17..1153 | 5685 | 100 | Plus |
CG40191-RA | 1137 | CG40191-PA | 1..1137 | 17..1153 | 5685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:36:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40191-RC | 1518 | CG40191-RC | 246..1382 | 17..1153 | 5685 | 100 | Plus |
CG40191-RD | 1386 | CG40191-RD | 66..1202 | 17..1153 | 5685 | 100 | Plus |
CG40191-RA | 2923 | CG40191-RA | 66..1202 | 17..1153 | 5685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:36:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 1265342..1266026 | 469..1153 | 3425 | 100 | Plus |
2R | 25286936 | 2R | 1264546..1264841 | 51..346 | 1480 | 100 | Plus |
2R | 25286936 | 2R | 1265171..1265294 | 347..470 | 620 | 100 | Plus |
2R | 25286936 | 2R | 1264458..1264495 | 17..54 | 190 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:36:28 has no hits.
BS15413.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:40 Download gff for
BS15413.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40191-RD | 86..1220 | 17..1151 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:52:33 Download gff for
BS15413.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40191-RA | 66..1200 | 17..1151 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:52:36 Download gff for
BS15413.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40191-RA | 66..1200 | 17..1151 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:52:36 Download gff for
BS15413.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 1264458..1264493 | 17..52 | 100 | -> | Plus |
2R | 1264548..1264841 | 53..346 | 100 | -> | Plus |
2R | 1265171..1265293 | 347..469 | 100 | -> | Plus |
2R | 1265343..1266024 | 470..1151 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:52:33 Download gff for
BS15413.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2RHet | 391091..391126 | 17..52 | 100 | -> | Plus |
2RHet | 391181..391474 | 53..346 | 100 | -> | Plus |
2RHet | 391804..391926 | 347..469 | 100 | -> | Plus |
2RHet | 391976..392657 | 470..1151 | 100 | | Plus |
BS15413.pep Sequence
Translation from 16 to 1152
> BS15413.pep
MGRFKLCASPREVMKYEDFIKRIRKSLYYGVGTPDTEMSVSLPFAEYAAD
LFSETHRGHSLHRLSCVSAAQVHATPCSLIMALIYLDRLNVIDSGYSCRI
TPQQLFVVSLMISTKFYAGHDERFYLEDWASDACMTEDRLKAVELEFLSA
MGWNIYISNELFFDKLRNVERSLAEQQGLRRGWLTYSELVQLLPSLEWTK
FLVNSLSVLSLSYAASIITLAGAFFIASQVPGTLWHRDVETASDFTMTIS
SQVSVSNALESTPFINVQVSSLLRKTSNVNVELMNLEKTSCARARLNKIE
YKHPRHQSVPTLSFISTCPQLDLLYAQDGTRNWLNIKSPNSDYKNNRNLS
ITVRSVQLEEQKAENDSVIWQANTEAMQ*
BS15413.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:35:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40191-PC | 378 | CG40191-PC | 1..378 | 1..378 | 1941 | 100 | Plus |
CG40191-PD | 378 | CG40191-PD | 1..378 | 1..378 | 1941 | 100 | Plus |
CG40191-PA | 378 | CG40191-PA | 1..378 | 1..378 | 1941 | 100 | Plus |
CG40191-PB | 396 | CG40191-PB | 1..396 | 1..378 | 1912 | 95.5 | Plus |
CG40191-PE | 268 | CG40191-PE | 1..268 | 111..378 | 1371 | 100 | Plus |