Clone BS15413 Report

Search the DGRC for BS15413

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:154
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptCG40191-RA
Protein status:BS15413.pep: full length peptide match
Sequenced Size:1169

Clone Sequence Records

BS15413.5prime Sequence

206 bp (122 high quality bases) assembled on 2006-12-21

> BS15413.5prime
GAAGTTATCCCTTGACATGGGGCGATTTAAGTTATGTGCTTCGCCGAGAG
AGGTTATGAAGTACGAAGACTTTATAAAACGCATTCGAAAAAGCCTCTAC
TATGGCGTTGGAACACCAGACACAGAAATGTCGGTCTCCTTACCCTTTGC
GGAGTACGCGGCAGATTTGTTTTCGGAGACTCATCGCGGGCATTCTTGCA
TCGCCT

BS15413.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 19:20:23 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:52:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG40191-RC 1518 CG40191-RC 246..436 17..206 930 99.5 Plus
CG40191-RD 1386 CG40191-RD 66..256 17..206 930 99.5 Plus
CG40191-RA 2923 CG40191-RA 66..256 17..206 930 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:52:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 1264546..1264692 51..197 735 100 Plus
2R 25286936 2R 1264458..1264495 17..54 190 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:52:53 has no hits.

BS15413.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 23:21:23 Download gff for BS15413.5prime
Subject Subject Range Query Range Percent Splice Strand
CG40191-RA 63..256 14..206 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:59:56 Download gff for BS15413.5prime
Subject Subject Range Query Range Percent Splice Strand
CG40191-RA 63..256 14..206 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:59:56 Download gff for BS15413.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 1264455..1264493 14..52 97 -> Plus
2R 1264548..1264702 53..206 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 23:21:23 Download gff for BS15413.5prime
Subject Subject Range Query Range Percent Splice Strand
2RHet 391088..391126 14..52 97 -> Plus
2RHet 391181..391335 53..206 99   Plus

BS15413.3prime Sequence

894 bp (705 high quality bases) assembled on 2006-12-21

> BS15413.3prime
ATGGTCTAGAAAGCTTTTACTGCATTGCTTCGGTGTTGGCTTGCCAAATA
ACGGAATCATTTTCAGCCTTTTGCTCTTCTAGTTGTACGGATCTAACTGT
TATTGAAAGGTTTCTGTTGTTTTTGTAGTCGCTGTTGGGCGATTTAATAT
TTAGCCAATTCCTTGTTCCATCTTGGGCATACAATAAATCAAGTTGTGGA
CAGGTGCTTATGAATGAAAGCGTAGGTACTGATTGATGGCGCGGATGCTT
ATATTCAATTTTATTCAGTCTTGCCCTGGCGCAGCTTGTCTTCTCAAGAT
TCATCAATTCAACATTCACGTTACTCGTTTTACGTAAAAGTGAGGATACT
TGGACATTAATAAAAGGTGTGGACTCTAATGCATTTGAAACGGATACCTG
ACTGCTAATTGTCATGGTGAAATCTGAGGCAGTTTCCACATCCCGATGCC
ATAACGTACCGGGAACTTGGCTCGCAATAAAAAAAGCTCCGGCTAATGTT
ATAATACTTGCCGCATAGCTTAGAGATAGTACAGACAGGCTGTTAACGAG
GAATTTCGTCCATTCAAGGCTAGGCAGCAACTGCACGAGCTCACTGTAAG
TGAGCCAACCTCTACGCAGTCCCTGCTGTTCAGCCAAAGAACGTTCAACG
TTTCTTAACTTATCAAAGAATAGCTCATTGGATATGTATATATTCCAACC
CATAGCGGAAAGAAATTCGAGCTCGACTGCCTTGAGCCTATCTTCCGTCA
TACAAGCGTCACTGGCCCAGTCTTCCAGATAGAACCGTTCGTCGTGGCCC
GCGTAGAATTTTGTGGAAATCATTAGTGACACAACAAACAGCTGCTGTGG
TGTGATTCTGCAGCTATAGCCCGAGTCGATGACGTTTAAGCGAT

BS15413.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 19:20:23 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 23:55:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG40191-RC 1518 CG40191-RC 505..1382 894..17 4390 100 Minus
CG40191-RD 1386 CG40191-RD 325..1202 894..17 4390 100 Minus
CG40191-RA 2923 CG40191-RA 325..1202 894..17 4390 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 23:55:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 1265342..1266026 701..17 3425 100 Minus
2R 25286936 2R 1265171..1265294 823..700 620 100 Minus
2R 25286936 2R 1264771..1264841 894..824 355 100 Minus
Blast to na_te.dros performed on 2015-02-05 23:55:15 has no hits.

BS15413.3prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 03:33:25 Download gff for BS15413.3prime
Subject Subject Range Query Range Percent Splice Strand
CG40191-RA 325..1211 7..894 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 00:33:58 Download gff for BS15413.3prime
Subject Subject Range Query Range Percent Splice Strand
CG40191-RA 325..1211 7..894 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 00:33:58 Download gff for BS15413.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 1264771..1264841 824..894 100 -> Minus
2R 1265171..1265293 701..823 100 -> Minus
2R 1265343..1266035 7..700 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 03:33:25 Download gff for BS15413.3prime
Subject Subject Range Query Range Percent Splice Strand
2RHet 391404..391474 824..894 100 -> Minus
2RHet 391804..391926 701..823 100 -> Minus
2RHet 391976..392668 7..700 99   Minus

BS15413.complete Sequence

1169 bp assembled on 2009-08-24

GenBank Submission: KX801720

> BS15413.complete
GAAGTTATCAGTCGACATGGGGCGATTTAAGTTATGTGCTTCGCCGAGAG
AGGTTATGAAGTACGAAGACTTTATAAAACGCATTCGAAAAAGCCTCTAC
TATGGCGTTGGAACACCAGACACAGAAATGTCGGTCTCCTTACCCTTTGC
GGAGTACGCGGCAGATTTGTTTTCGGAGACTCATCGCGGGCATTCTTTGC
ATCGCCTAAGTTGCGTATCTGCTGCACAAGTACATGCCACGCCTTGCTCT
TTAATTATGGCATTGATATACCTCGATCGCTTAAACGTCATCGACTCGGG
CTATAGCTGCAGAATCACACCACAGCAGCTGTTTGTTGTGTCACTAATGA
TTTCCACAAAATTCTACGCGGGCCACGACGAACGGTTCTATCTGGAAGAC
TGGGCCAGTGACGCTTGTATGACGGAAGATAGGCTCAAGGCAGTCGAGCT
CGAATTTCTTTCCGCTATGGGTTGGAATATATACATATCCAATGAGCTAT
TCTTTGATAAGTTAAGAAACGTTGAACGTTCTTTGGCTGAACAGCAGGGA
CTGCGTAGAGGTTGGCTCACTTACAGTGAGCTCGTGCAGTTGCTGCCTAG
CCTTGAATGGACGAAATTCCTCGTTAACAGCCTGTCTGTACTATCTCTAA
GCTATGCGGCAAGTATTATAACATTAGCCGGAGCTTTTTTTATTGCGAGC
CAAGTTCCCGGTACGTTATGGCATCGGGATGTGGAAACTGCCTCAGATTT
CACCATGACAATTAGCAGTCAGGTATCCGTTTCAAATGCATTAGAGTCCA
CACCTTTTATTAATGTCCAAGTATCCTCACTTTTACGTAAAACGAGTAAC
GTGAATGTTGAATTGATGAATCTTGAGAAGACAAGCTGCGCCAGGGCAAG
ACTGAATAAAATTGAATATAAGCATCCGCGCCATCAATCAGTACCTACGC
TTTCATTCATAAGCACCTGTCCACAACTTGATTTATTGTATGCCCAAGAT
GGAACAAGGAATTGGCTAAATATTAAATCGCCCAACAGCGACTACAAAAA
CAACAGAAACCTTTCAATAACAGTTAGATCCGTACAACTAGAAGAGCAAA
AGGCTGAAAATGATTCCGTTATTTGGCAAGCCAACACCGAAGCAATGCAG
TAAAAGCTTTCTAGACCAT

BS15413.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:36:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG40191-RC 1137 CG40191-PC 1..1137 17..1153 5685 100 Plus
CG40191-RD 1137 CG40191-PD 1..1137 17..1153 5685 100 Plus
CG40191-RA 1137 CG40191-PA 1..1137 17..1153 5685 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:36:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG40191-RC 1518 CG40191-RC 246..1382 17..1153 5685 100 Plus
CG40191-RD 1386 CG40191-RD 66..1202 17..1153 5685 100 Plus
CG40191-RA 2923 CG40191-RA 66..1202 17..1153 5685 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:36:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 1265342..1266026 469..1153 3425 100 Plus
2R 25286936 2R 1264546..1264841 51..346 1480 100 Plus
2R 25286936 2R 1265171..1265294 347..470 620 100 Plus
2R 25286936 2R 1264458..1264495 17..54 190 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:36:28 has no hits.

BS15413.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:40 Download gff for BS15413.complete
Subject Subject Range Query Range Percent Splice Strand
CG40191-RD 86..1220 17..1151 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:52:33 Download gff for BS15413.complete
Subject Subject Range Query Range Percent Splice Strand
CG40191-RA 66..1200 17..1151 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:52:36 Download gff for BS15413.complete
Subject Subject Range Query Range Percent Splice Strand
CG40191-RA 66..1200 17..1151 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:52:36 Download gff for BS15413.complete
Subject Subject Range Query Range Percent Splice Strand
2R 1264458..1264493 17..52 100 -> Plus
2R 1264548..1264841 53..346 100 -> Plus
2R 1265171..1265293 347..469 100 -> Plus
2R 1265343..1266024 470..1151 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:52:33 Download gff for BS15413.complete
Subject Subject Range Query Range Percent Splice Strand
2RHet 391091..391126 17..52 100 -> Plus
2RHet 391181..391474 53..346 100 -> Plus
2RHet 391804..391926 347..469 100 -> Plus
2RHet 391976..392657 470..1151 100   Plus

BS15413.pep Sequence

Translation from 16 to 1152

> BS15413.pep
MGRFKLCASPREVMKYEDFIKRIRKSLYYGVGTPDTEMSVSLPFAEYAAD
LFSETHRGHSLHRLSCVSAAQVHATPCSLIMALIYLDRLNVIDSGYSCRI
TPQQLFVVSLMISTKFYAGHDERFYLEDWASDACMTEDRLKAVELEFLSA
MGWNIYISNELFFDKLRNVERSLAEQQGLRRGWLTYSELVQLLPSLEWTK
FLVNSLSVLSLSYAASIITLAGAFFIASQVPGTLWHRDVETASDFTMTIS
SQVSVSNALESTPFINVQVSSLLRKTSNVNVELMNLEKTSCARARLNKIE
YKHPRHQSVPTLSFISTCPQLDLLYAQDGTRNWLNIKSPNSDYKNNRNLS
ITVRSVQLEEQKAENDSVIWQANTEAMQ*

BS15413.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:35:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG40191-PC 378 CG40191-PC 1..378 1..378 1941 100 Plus
CG40191-PD 378 CG40191-PD 1..378 1..378 1941 100 Plus
CG40191-PA 378 CG40191-PA 1..378 1..378 1941 100 Plus
CG40191-PB 396 CG40191-PB 1..396 1..378 1912 95.5 Plus
CG40191-PE 268 CG40191-PE 1..268 111..378 1371 100 Plus