Clone Sequence Records
BS15414.complete Sequence
1025 bp assembled on 2010-02-09
GenBank Submission: KX803710
> BS15414.complete
GAAGTTATCAGTCGACATGTTTCTGTTCATCAGCCGTCCCACGCGGACGC
TGGGCAACCGAATGCAGGCGGTTCGGGAGCGCTTGGGTCCGGACTTAGCT
GATCAACTGGACGCTCTGCATCGTAATGTGATGCGGACTGGTCTGGTGTC
CACACAGGAGCTGGAGGAGGCATTCCGCAAAACGCGCGACATGGACCACA
ACCCGAACCGGTTGAATCTGCTCTGGCTGCTGGGCATCGTGTTCTTCATC
ATGGTGGCCACCCCGGTCTTTTATGAGACCATCTCGTTCCTGCTCGGAGT
GCGTTGCTTTCTGCCCAACAACTACTTGGTATGGGAGGCCACCAGGCCCA
TTAGTGACTGCGAGTTTTGTAAAGGGGTGAGGGCTCCCCTGATCTTGGCC
AATCTCACCATGGAGGAGTTTGCACCGCACGCGTACTCCTCAATGCCCAT
CATTGTGAAGAGGGCGGTGGCTCACTGGCCAGCACAAAAGAACCTCAGCT
TTGCCTTCATAAAAGAATTGTACGAAAGTGTCCCGGGAGCAATGGACTCA
GATTGCCAGTTTCTGCACTTCAACTCTGATCTCAAGTCGCTGAAGCATGT
GTTTTCCATGTCCGCGGAGCGTTCAAATCTTACTCAAGGAGTGCCCTGGT
TCGTGGGCTGGAGTGTCTGCCAGCCGGCCGTCCTGGCGGAGCTCAGAAAG
CTGTATCCCCGCCCGCATTTCCTGCCCTTCGATGCTGAAATGCCTCACAC
GGACTTCATATTAATGGGCTACGAGCAAGGGGCTGTGATGCATCTTGATT
ACATTCCCCGCCTGTTGTGGCAAGCTCAGTTAAGTGGCAACAAGACCTGG
TTTCTGGCACCTGCTCCTGAATGTGACCACCAGTGTCAGCCCTTCTCCTT
CTATGTGGAGCCCGGAGATGCTGTGTTGGTGGACACACGCATCTGGTACC
ATGCCAATTCAATTCCCAAGGGTCAGTTTTCGCTCACCGTTCAGTCCGAG
TATGGATGAAAGCTTTCTAGACCAT
BS15414.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:28:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2211-RB | 993 | CG2211-PB | 1..993 | 17..1009 | 4965 | 100 | Plus |
CG2211-RA | 993 | CG2211-PA | 1..993 | 17..1009 | 4965 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:28:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2211-RB | 1226 | CG2211-RB | 56..1048 | 17..1009 | 4965 | 100 | Plus |
CG2211-RA | 1941 | CG2211-RA | 771..1763 | 17..1009 | 4965 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:28:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1333689..1334457 | 793..25 | 3845 | 100 | Minus |
3L | 28110227 | 3L | 1333417..1333632 | 1009..794 | 1080 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:28:07 has no hits.
BS15414.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:11:28 Download gff for
BS15414.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2211-RA | 721..1706 | 23..1008 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:59:55 Download gff for
BS15414.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2211-RA | 777..1762 | 23..1008 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:14:38 Download gff for
BS15414.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2211-RA | 721..1706 | 23..1008 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:29:32 Download gff for
BS15414.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2211-RA | 777..1762 | 23..1008 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:29:32 Download gff for
BS15414.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1333418..1333632 | 794..1008 | 100 | <- | Minus |
3L | 1333689..1334459 | 23..793 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:59:55 Download gff for
BS15414.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1333418..1333632 | 794..1008 | 100 | <- | Minus |
arm_3L | 1333689..1334459 | 23..793 | 99 | | Minus |
BS15414.3prime Sequence
716 bp (699 high quality bases) assembled on 2006-12-21
> BS15414.3prime
ATGGTCTAGAAAGCTTTCCCTTTACTCGGACTGAACGGTGAGCGAAAACT
GACCCTTGGGAATTGAATTGGCATGGTACCAGATGCGTGTGTCCACCAAC
ACAGCATCTCCGGGCTCCACATAGAAGGAGAAGGGCTGACACTGGTGGTC
ACATTCAGGAGCAGGTGCCAGAAACCAGGTCTTGTTGCCACTTAACTGAG
CTTGCCACAACAGGCGGGGAATGTAATCAAGATGCATCACAGCCCCTTGC
TCGTAGCCCATTAATATGAAGTCCGTGTGAGGCATTTCAGCATCGAAGGG
CAGGAAATGCGGGCGGGGATACAGCTTTCTGAGCTCCGCCAGGACGGCCG
GCTGGCAGACACTCCAGCCCACGAACCAGGGCACTCCTTGAGTAAGATTT
GAACGCTCCGCGGACATGGAAAACACATGCTTCAGCGACTTGAGATCAGA
GTTGAAGTGCAGAAACTGGCAATCTGAGTCCATTGCTCCCGGGACACTTT
CGTACAATTCTTTTATGAAGGCAAAGCTGAGGTTCTTTTGTGCTGGCCAG
TGAGCCACCGCCCTCTTCACAATGATGGGCATTGAGGAGTACGCGTGCGG
TGCAAACTCCTCCATGGTGAGATTGGCCAAGATCAGGAGAGCCCTCACCC
CTTTACAAAACTCGCAGTCACTAATGGGCCTGGTGGCCTCCCATACCAAG
TAGTTGTTGGGCAGAA
BS15414.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:20:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2211-PA | 993 | CG2211-RA | 293..986 | 716..23 | 3445 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 07:21:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2211-RB | 1226 | CG2211-RB | 348..1041 | 716..23 | 3455 | 99.9 | Minus |
CG2211-RA | 1941 | CG2211-RA | 1063..1756 | 716..23 | 3455 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 07:20:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1333689..1334173 | 232..716 | 2410 | 99.8 | Plus |
3L | 28110227 | 3L | 1333424..1333632 | 23..231 | 1045 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 07:20:58 has no hits.
BS15414.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:26:10 Download gff for
BS15414.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2211-PA | 295..993 | 17..714 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:02:40 Download gff for
BS15414.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2211-PA | 295..993 | 17..714 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 22:23:25 Download gff for
BS15414.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2211-RA | 1063..1759 | 19..716 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 08:21:26 Download gff for
BS15414.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2211-RA | 1063..1759 | 19..716 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 08:21:26 Download gff for
BS15414.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1333421..1333632 | 19..231 | 99 | <- | Plus |
3L | 1333689..1334173 | 232..716 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 22:23:25 Download gff for
BS15414.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1333421..1333632 | 19..231 | 99 | <- | Plus |
arm_3L | 1333689..1334173 | 232..716 | 99 | | Plus |
BS15414.5prime Sequence
836 bp (665 high quality bases) assembled on 2006-12-21
> BS15414.5prime
GAAGTTATCACTTTACATGTTTCTGTTCATCAGCCGTCCCACGCGGACGC
TGGGCAACCGAATGCAGGCGGTTCGGGAGCGCTTGGGTCCGGACTTAGCT
GATCAACTGGACGCTCTGCATCGTAATGTGATGCGGACTGGTCTGGTGTC
CACACAGGAGCTGGAGGAGGCATTCCGCAAAACGCGCGACATGGACCACA
ACCCGAACCGGTTGAATCTGCTCTGGCTGCTGGGCATCGTGTTCTTCATC
ATGGTGGCCACCCCGGTCTTTTATGAGACCATCTCGTTCCTGCTCGGAGT
GCGTTGCTTTCTGCCCAACAACTACTTGGTATGGGAGGCCACCAGGCCCA
TTAGTGACTGCGAGTTTTGTAAAGGGGTGAGGGCTCCCCTGATCTTGGCC
AATCTCACCATGGAGGAGTTTGCACCGCACGCGTACTCCTCAATGCCCAT
CATTGTGAAGAGGGCGGTGGCTCACTGGCCAGCACAAAAGAACCTCAGCT
TTGCCTTCATAAAAGAATTGTACGAAAGTGTCCCGGGAGCAATGGACTCA
GATTGCCAGTTTCTGCACTTCAACTCTGATCTCAAGTCGCTGAAGCATGT
GTTTTCCATGTCCGCGGAGCGTTCAAATCTTACTCAAGGAGTGCCCTGGT
TCGTGGGCTGGAGTGTCTGCCAGCCGGCCGTCCTGGCGGAGCTCAGAAAG
CTGTATCCCCGCCCGCATTTCCTGCCCTTCGATGCTGAAATGCCTCACAC
GGACTTCATATTAATGGGCTACGAGCAAGGGGCTGTGATGCATCTTGATT
ACATTCCCCGCCTGTTGTGGCAAGCTCAGTTAAGTG
BS15414.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:20:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2211-PA | 993 | CG2211-RA | 1..820 | 17..836 | 4100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:31:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2211-RB | 1226 | CG2211-RB | 56..875 | 17..836 | 4100 | 100 | Plus |
CG2211-RA | 1941 | CG2211-RA | 771..1590 | 17..836 | 4100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:31:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1333689..1334457 | 793..25 | 3845 | 100 | Minus |
3L | 28110227 | 3L | 1333590..1333632 | 836..794 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:31:52 has no hits.
BS15414.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:26:12 Download gff for
BS15414.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2211-PA | 1..820 | 17..836 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:02:42 Download gff for
BS15414.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2211-PA | 1..820 | 17..836 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 13:02:57 Download gff for
BS15414.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2211-RA | 759..1590 | 6..836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:05:55 Download gff for
BS15414.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2211-RA | 759..1590 | 6..836 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:05:55 Download gff for
BS15414.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1333590..1333632 | 794..836 | 100 | <- | Minus |
3L | 1333689..1334457 | 25..793 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 13:02:57 Download gff for
BS15414.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1333590..1333632 | 794..836 | 100 | <- | Minus |
arm_3L | 1333689..1334457 | 25..793 | 100 | | Minus |
BS15414.pep Sequence
Translation from 16 to 1008
> BS15414.pep
MFLFISRPTRTLGNRMQAVRERLGPDLADQLDALHRNVMRTGLVSTQELE
EAFRKTRDMDHNPNRLNLLWLLGIVFFIMVATPVFYETISFLLGVRCFLP
NNYLVWEATRPISDCEFCKGVRAPLILANLTMEEFAPHAYSSMPIIVKRA
VAHWPAQKNLSFAFIKELYESVPGAMDSDCQFLHFNSDLKSLKHVFSMSA
ERSNLTQGVPWFVGWSVCQPAVLAELRKLYPRPHFLPFDAEMPHTDFILM
GYEQGAVMHLDYIPRLLWQAQLSGNKTWFLAPAPECDHQCQPFSFYVEPG
DAVLVDTRIWYHANSIPKGQFSLTVQSEYG*
BS15414.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:07:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2211-PB | 330 | CG2211-PB | 1..330 | 1..330 | 1773 | 100 | Plus |
CG2211-PA | 330 | CG2211-PA | 1..330 | 1..330 | 1773 | 100 | Plus |
CG14331-PC | 312 | CG14331-PC | 54..311 | 71..329 | 397 | 34 | Plus |