Clone Sequence Records
BS15416.complete Sequence
2264 bp assembled on 2009-12-07
GenBank Submission: KX804111
> BS15416.complete
GAAGTTATCAGTCGACATGAGCCTGCCCAGCGCCAGCAACCACGCACATG
CTGCATCGCCCGTCTACAGCAACAGCAATAACAACAAGTCGAGCGCGAGC
AGCAAAAAGACCTCCTCCAAAAACGATTTGCTACGCTGCGCCGTGGGACT
CCTGCTGAAGCAGAAAAACTACGTGAGCAACGAACGATTTCGGCGGTCGG
ATTTTTTGCTGCTGCAAAACAAACAGCAGTTTGCTGTCAACAAAATGCTG
GATACGGATTTGCACGGTGGCAATAGCTTCACCTTTTCAAATGTCCAGGT
TATCACCAACAACCAGCACACTGTGGACCAGCAATTTGGTCGGTTTTCGC
AGTTCGTGGAGGCCCAGGCCGAACCGCTGCGTCTGGAAATGAAGCGCTTT
TATGGACCCATGCTGTGCCACTTCTATCTGGATCTGCTCAAGGCTCGCGA
ACCGCGTGGCGCTGTGGAGTTGTTGCGCAAATATGCTCACTTGGTGGCCC
CCGTGGATATGTACGATGCACCACCACCTACCAAGATCAACGGATGCTCC
ACTACGGCCAATGAGTCCACTTTTAACATACGCTTCGCAAAGGAAGCCCA
GGACACTGGGGACACGGAACTGGACTACTTTATGCGCCTGGTGCAAACCC
TGAGTGGCTACACACGGCTGGAGGCAGCAGAGTCCGATGACACAGTGGCC
CATTTTCGATCTTCGAAATACGAACTACATACTACAGCCGTAGTTGTTAA
TAGGATATGCGCTTATCTCCAACGACGGGGCCACGTTTTAATTATGAACC
TACTCTACACCTGGTTGCATGTCCATATAGTGGAGAATGAGCAGCGCGCC
TTTAGTGAGGATCACCTGCTTGGCTTGACGGATGACCTGGAAGGTGAGGA
TGGAGAGGACGATGTTGTTTCCAAACCAGCAGTAACCCTTAATACCCGCG
GAGACATAAGACCAAGCAAATCCCTCACTGAAAAGTCGAACCGAAAACGA
CCCGCTGAGGAGCCAAACATTATGCTAGAAACAGACATCAAACAGGAGGT
AGAAACGGATGAATCTGCAGAGCTTAGTAAATTACAACTGAATATAGACG
CCTGCTTGGACACCCTTAAATCGGCCACTGAACAGATACTCAAGTCTCAG
GTGGAGTTGCCGCGATTTCTCAGAATCAGTGAACGTTCTCGGGGCCTCAC
CTCCGCCCATCTGGATCCCAGTGAGTGCCACATGTTAGCCGGGTTCGACA
ATTCTGCCGTACAGCTGTGGCAGTTAAACCAGAGCTACTGCCGCGGCAAG
AGCTTCTACAGACGCTATCCGCAAAAGCGGTGTCCCTGGGAGCTGAACAA
TTGCGCGAATCAAGAGGAGGAGACGGATGAGGACAGCAGCGATGAGGATG
TCAAGTGCTCTGAGGAGGAGAGACGGGAACGCAACAGGGCGCGACATTGC
AAATATGCTGATAACTCCTACAACGAATACGGCGGATTTCAGCTGCGAGG
TCACACAAAAGGAGTCACCGATGTGCGCTTCTCCGCCCACTACCCACTCA
TGTATAGTGTGTCCAAAGACGCAACCATGCGGTGCTGGCGTGCCCACAAC
CTGCATTGCGCCGCCATATACAGAAGTCACAACTACCCAATTTGGTGCTT
GGACGAAAGTCCAGTGGGCCAATACGTGGTAACGGGTTCCAAGGATTTGA
GTGCGCGCCTCTGGTCGCTAGAGAAGGAACATGCGCTCATAATTTATGCC
GGGCATACACAGGATGTTGAGTGCGTTGCGTTCCATCCGAATGGCAACTA
CATAGCCACAGGATCGGCAGATCACTCCGTTCGCCTGTGGTGTGCAACCA
GCGGAAAATTGATGCGTGTCTTTGCCGACTGCCGTCAGGCGGTGACCCAG
CTGGCGTTTAGCCCAGATGGAAAGATGTTGGCTGCCGCCGGAGAGGAAAC
GAAGGTGCGTATATTCGACTTGGCCGCCGGAGCACAGCTGGCTGAGCTCA
AGGATCACTCGGCGAGCATTAGTTCTCTTTCCTGGAGCACGCACAATAGG
CACCTGGCCACAGCGTGCAGCGATGGTACCTTGCGATTGTGGGACATCAA
GAAACTATCGCCCATGAGTGACAACAGTAGTGCTGGAAGCTCATCATCAG
CTACAACGAATCGTGTGCTTACTGTCAATAGTTCCTGCCAGCGCTTGGTC
GATGTTTTTTACGGGACCAGCAAGACGCTCTACTGCATCGGCACTTAAAA
GCTTTCTAGACCAT
BS15416.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:42:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wda-RA | 2232 | CG4448-PA | 1..2232 | 17..2248 | 11160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:42:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wda-RA | 2744 | CG4448-RA | 89..2321 | 17..2249 | 11165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:42:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23256486..23257781 | 1470..175 | 6480 | 100 | Minus |
3R | 32079331 | 3R | 23255701..23256049 | 2118..1770 | 1745 | 100 | Minus |
3R | 32079331 | 3R | 23256108..23256408 | 1771..1471 | 1505 | 100 | Minus |
3R | 32079331 | 3R | 23257841..23257999 | 175..17 | 795 | 100 | Minus |
3R | 32079331 | 3R | 23255493..23255625 | 2249..2117 | 665 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 01:42:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3244..3320 | 11..87 | 141 | 67.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6845..6925 | 28..114 | 132 | 66.7 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1035..1156 | 1..126 | 132 | 61.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2427 | 28..112 | 130 | 65.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2387 | 67..126 | 120 | 66.7 | Plus |
BS15416.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:16:55 Download gff for
BS15416.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wda-RA | 1..2232 | 17..2248 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:40:36 Download gff for
BS15416.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wda-RA | 59..2288 | 17..2246 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:55:07 Download gff for
BS15416.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wda-RA | 89..2318 | 17..2246 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:48:01 Download gff for
BS15416.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wda-RA | 59..2288 | 17..2246 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:54:48 Download gff for
BS15416.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wda-RA | 89..2318 | 17..2246 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:54:48 Download gff for
BS15416.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23255496..23255623 | 2119..2246 | 100 | <- | Minus |
3R | 23255701..23256047 | 1772..2118 | 100 | <- | Minus |
3R | 23256108..23256408 | 1471..1771 | 100 | <- | Minus |
3R | 23256486..23257780 | 176..1470 | 100 | <- | Minus |
3R | 23257841..23257999 | 17..175 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:55:07 Download gff for
BS15416.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19081218..19081345 | 2119..2246 | 100 | <- | Minus |
arm_3R | 19081423..19081769 | 1772..2118 | 100 | <- | Minus |
arm_3R | 19081830..19082130 | 1471..1771 | 100 | <- | Minus |
arm_3R | 19082208..19083502 | 176..1470 | 100 | <- | Minus |
arm_3R | 19083563..19083721 | 17..175 | 100 | | Minus |
BS15416.3prime Sequence
905 bp (723 high quality bases) assembled on 2006-12-21
> BS15416.3prime
ATGGTCTAGAAAGCTTTTAAGTGCCGATGCAGTAGAGCGTCTTGCTGGTC
CCGTAAAAAACATCGACCAAGCGCTGGCAGGAACTATTGACAGTAAGCAC
ACGATTCGTTGTAGCTGATGATGAGCTTCCAGCACTACTGTTGTCACTCA
TGGGCGATAGTTTCTTGATGTCCCACAATCGCAAGGTACCATCGCTGCAC
GCTGTGGCCAGGTGCCTATTGTGCGTGCTCCAGGAAAGAGAACTAATGCT
CGCCGAGTGATCCTTGAGCTCAGCCAGCTGTGCTCCGGCGGCCAAGTCGA
ATATACGCACCTTCGTTTCCTCTCCGGCGGCAGCCAACATCTTTCCATCT
GGGCTAAACGCCAGCTGGGTCACCGCCTGACGGCAGTCGGCAAAGACACG
CATCAATTTTCCGCTGGTTGCACACCACAGGCGAACGGAGTGATCTGCCG
ATCCTGTGGCTATGTAGTTGCCATTCGGATGGAACGCAACGCACTCAACA
TCCTGTGTATGCCCGGCATAAATTATGAGCGCATGTTCCTTCTCTAGCGA
CCAGAGGCGCGCACTCAAATCCTTGGAACCCGTTACCACGTATTGGCCCA
CTGGACTTTCGTCCAAGCACCAAATTGGGTAGTTGTGACTTCTGTATATG
GCGGCGCAATGCAGGTTGTGGGCACGCCAGCACCGCATGGTTGCGTCTTT
GGACACACTATACATGAGTGGGTAGTGGGCGGAGAAGCGCACATCGGTGA
CTCCTTTTGTGTGACCTCGCAGCTGAAATCCGCCGTATTCGTTGTANGAG
TTATCAGCATATTTGCAATGTCGCGCCCTGTTGCGTTCCCGTCTCTCCTC
CTCAGAGCACTTGACATCCTCATCGCTGCTGTCCTCATCCGTCTCCTCCT
CTTGA
BS15416.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:20:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4448-PA | 2232 | CG4448-RA | 1344..2232 | 905..17 | 4426 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 02:47:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wda-RA | 2744 | CG4448-RA | 1432..2321 | 905..16 | 4439 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 02:47:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23255701..23256049 | 147..495 | 1745 | 100 | Plus |
3R | 32079331 | 3R | 23256108..23256408 | 494..794 | 1505 | 100 | Plus |
3R | 32079331 | 3R | 23255493..23255625 | 16..148 | 665 | 100 | Plus |
3R | 32079331 | 3R | 23256489..23256596 | 798..905 | 540 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 02:47:34 has no hits.
BS15416.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:26:15 Download gff for
BS15416.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4448-PA | 1345..2232 | 17..904 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:02:47 Download gff for
BS15416.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4448-PA | 1345..2232 | 17..904 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 05:28:54 Download gff for
BS15416.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wda-RA | 1433..2321 | 16..904 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 04:04:58 Download gff for
BS15416.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wda-RA | 1433..2321 | 16..904 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 04:04:58 Download gff for
BS15416.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23255493..23255623 | 16..146 | 100 | <- | Plus |
3R | 23255701..23256047 | 147..493 | 100 | <- | Plus |
3R | 23256108..23256408 | 494..794 | 100 | <- | Plus |
3R | 23256486..23256595 | 795..904 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 05:28:54 Download gff for
BS15416.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19081215..19081345 | 16..146 | 100 | <- | Plus |
arm_3R | 19081423..19081769 | 147..493 | 100 | <- | Plus |
arm_3R | 19081830..19082130 | 494..794 | 100 | <- | Plus |
arm_3R | 19082208..19082317 | 795..904 | 99 | | Plus |
BS15416.5prime Sequence
832 bp (750 high quality bases) assembled on 2006-12-21
> BS15416.5prime
GAAGTTATCAGTCGACATGAGCCTGCCCAGCGCCAGCAACCACGCACATG
CTGCATCGCCCGTCTACAGCAACAGCAATAACAACAAGTCGAGCGCGAGC
AGCAAAAAGACCTCCTCCAAAAACGATTTGCTACGCTGCGCCGTGGGACT
CCTGCTGAAGCAGAAAAACTACGTGAGCAACGAACGATTTCGGCGGTCGG
ATTTTTTGCTGCTGCAAAACAAACAGCAGTTTGCTGTCAACAAAATGCTG
GATACGGATTTGCACGGTGGCAATAGCTTCACCTTTTCAAATGTCCAGGT
TATCACCAACAACCAGCACACTGTGGACCAGCAATTTGGTCGGTTTTCGC
AGTTCGTGGAGGCCCAGGCCGAACCGCTGCGTCTGGAAATGAAGCGCTTT
TATGGACCCATGCTGTGCCACTTCTATCTGGATCTGCTCAAGGCTCGCGA
ACCGCGTGGCGCTGTGGAGTTGTTGCGCAAATATGCTCACTTGGTGGCCC
CCGTGGATATGTACGATGCACCACCACCTACCAAGATCAACGGATGCTCC
ACTACGGCCAATGAGTCCACTTTTAACATACGCTTCGCAAAGGAAGCCCA
GGACACTGGGGACACGGAACTGGACTACTTTATGCGCCTGGTGCAAACCC
TGAGTGGCTACACACGGCTGGAGGCAGCAGAGTCCGATGACACAGTGGCC
CATTTTCGATCTTCGAAATACGAACTACATACTACAGCCGTAGTTGTTAA
TAGGATATGCGCTTATCTCCAACGACGGGGCCACGTTTTAATTATGAACC
TACTCTACACCTGGTTGCATGTCCATATAGTG
BS15416.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:20:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4448-PA | 2232 | CG4448-RA | 1..816 | 17..832 | 4080 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:49:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wda-RA | 2744 | CG4448-RA | 89..904 | 17..832 | 4080 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:49:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23257124..23257781 | 832..175 | 3290 | 100 | Minus |
3R | 32079331 | 3R | 23257841..23257999 | 175..17 | 795 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 11:49:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3244..3320 | 11..87 | 141 | 67.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6845..6925 | 28..114 | 132 | 66.7 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1035..1156 | 1..126 | 132 | 61.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2427 | 28..112 | 130 | 65.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2387 | 67..126 | 120 | 66.7 | Plus |
BS15416.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:26:16 Download gff for
BS15416.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4448-PA | 1..816 | 17..832 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:02:49 Download gff for
BS15416.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4448-PA | 1..816 | 17..832 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 23:20:52 Download gff for
BS15416.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wda-RA | 89..904 | 17..832 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:50:27 Download gff for
BS15416.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wda-RA | 89..904 | 17..832 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:50:27 Download gff for
BS15416.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23257124..23257780 | 176..832 | 100 | <- | Minus |
3R | 23257841..23257999 | 17..175 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 23:20:52 Download gff for
BS15416.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19082846..19083502 | 176..832 | 100 | <- | Minus |
arm_3R | 19083563..19083721 | 17..175 | 100 | | Minus |
BS15416.pep Sequence
Translation from 16 to 2247
> BS15416.pep
MSLPSASNHAHAASPVYSNSNNNKSSASSKKTSSKNDLLRCAVGLLLKQK
NYVSNERFRRSDFLLLQNKQQFAVNKMLDTDLHGGNSFTFSNVQVITNNQ
HTVDQQFGRFSQFVEAQAEPLRLEMKRFYGPMLCHFYLDLLKAREPRGAV
ELLRKYAHLVAPVDMYDAPPPTKINGCSTTANESTFNIRFAKEAQDTGDT
ELDYFMRLVQTLSGYTRLEAAESDDTVAHFRSSKYELHTTAVVVNRICAY
LQRRGHVLIMNLLYTWLHVHIVENEQRAFSEDHLLGLTDDLEGEDGEDDV
VSKPAVTLNTRGDIRPSKSLTEKSNRKRPAEEPNIMLETDIKQEVETDES
AELSKLQLNIDACLDTLKSATEQILKSQVELPRFLRISERSRGLTSAHLD
PSECHMLAGFDNSAVQLWQLNQSYCRGKSFYRRYPQKRCPWELNNCANQE
EETDEDSSDEDVKCSEEERRERNRARHCKYADNSYNEYGGFQLRGHTKGV
TDVRFSAHYPLMYSVSKDATMRCWRAHNLHCAAIYRSHNYPIWCLDESPV
GQYVVTGSKDLSARLWSLEKEHALIIYAGHTQDVECVAFHPNGNYIATGS
ADHSVRLWCATSGKLMRVFADCRQAVTQLAFSPDGKMLAAAGEETKVRIF
DLAAGAQLAELKDHSASISSLSWSTHNRHLATACSDGTLRLWDIKKLSPM
SDNSSAGSSSSATTNRVLTVNSSCQRLVDVFYGTSKTLYCIGT*
BS15416.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:01:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wda-PA | 743 | CG4448-PA | 1..743 | 1..743 | 3901 | 100 | Plus |
Taf5-PA | 704 | CG7704-PA | 305..651 | 322..698 | 462 | 28.7 | Plus |
can-PA | 942 | CG6577-PA | 622..855 | 493..719 | 289 | 28.6 | Plus |
wds-PB | 361 | CG17437-PB | 66..272 | 491..696 | 276 | 30.9 | Plus |
wds-PA | 361 | CG17437-PA | 66..272 | 491..696 | 276 | 30.9 | Plus |
wds-PB | 361 | CG17437-PB | 110..316 | 493..695 | 218 | 25.1 | Plus |