Clone BS15417 Report

Search the DGRC for BS15417

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:154
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptHis3.3A-RA
Protein status:BS15417.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15417.5prime Sequence

441 bp (441 high quality bases) assembled on 2006-12-21

> BS15417.5prime
GAAGTTATCACTCGACATGGCTCGTACTAAGCAGACTGCCCGTAAGTCGA
CCGGAGGAAAGGCTCCTCGTAAGCAGCTAGCCACCAAGGCTGCCCGTAAA
TCGGCGCCATCCACCGGCGGAGTGAAGAAGCCCCATCGTTATCGTCCCGG
AACTGTGGCTCTTCGTGAGATCCGTCGTTACCAGAAGTCGACCGAGTTGC
TCATCCGCAAGCTGCCCTTCCAGCGTCTGGTTCGTGAAATCGCTCAGGAT
TTCAAGACCGATCTGCGTTTCCAGTCGGCTGCCATCGGTGCCTTGCAGGA
AGCATCTGAGGCGTACCTGGTGGGTCTCTTCGAGGACACCAACTTGTGCG
CTATCCACGCCAAGCGCGTGACAATCATGCCTAAGGACATCCAGTTGGCG
CGCCGCATCCGTGGCGAGCGTGCTTAAAAGCTTTCTAGACC

BS15417.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:20:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG8989-PA 411 His3.3B-RA 1..411 17..427 2055 100 Plus
CG8989-PC 411 His3.3B-RC 1..411 17..427 2055 100 Plus
CG8989-PB 411 His3.3B-RB 1..411 17..427 2055 100 Plus
CG5825-PA 411 His3.3A-RA 1..215 17..231 475 88.8 Plus
CG5825-PB 372 His3.3A-RB 1..215 17..231 475 88.8 Plus
CG5825-PA 411 His3.3A-RA 292..378 308..394 185 88.5 Plus
CG31613-PA 411 His3:CG31613-RA 187..233 203..249 185 95.7 Plus
CG33803-PA 411 His3:CG33803-RA 187..233 203..249 185 95.7 Plus
CG33806-PA 411 His3:CG33806-RA 187..233 203..249 185 95.7 Plus
CG33809-PA 411 His3:CG33809-RA 187..233 203..249 185 95.7 Plus
CG33848-PA 411 His3:CG33848-RA 187..233 203..249 185 95.7 Plus
CG33863-PA 411 His3:CG33863-RA 187..233 203..249 185 95.7 Plus
CG33812-PA 411 His3:CG33812-RA 187..233 203..249 185 95.7 Plus
CG33815-PA 411 His3:CG33815-RA 187..233 203..249 185 95.7 Plus
CG33833-PA 411 His3:CG33833-RA 187..233 203..249 185 95.7 Plus
CG33836-PA 411 His3:CG33836-RA 187..233 203..249 185 95.7 Plus
CG33839-PA 411 His3:CG33839-RA 187..233 203..249 185 95.7 Plus
CG33842-PA 411 His3:CG33842-RA 187..233 203..249 185 95.7 Plus
CG33845-PA 411 His3:CG33845-RA 187..233 203..249 185 95.7 Plus
CG33851-PA 411 His3:CG33851-RA 187..233 203..249 185 95.7 Plus
CG33854-PA 411 His3:CG33854-RA 187..233 203..249 185 95.7 Plus
CG33857-PA 411 His3:CG33857-RA 187..233 203..249 185 95.7 Plus
CG33860-PA 411 His3:CG33860-RA 187..233 203..249 185 95.7 Plus
CG33866-PA 411 His3:CG33866-RA 187..233 203..249 185 95.7 Plus
CG33830-PA 411 His3:CG33830-RA 187..230 203..246 170 95.4 Plus
CG33821-PA 411 His3:CG33821-RA 187..230 203..246 170 95.4 Plus
CG33824-PA 411 His3:CG33824-RA 187..230 203..246 170 95.4 Plus
CG33818-PA 411 His3:CG33818-RA 187..230 203..246 170 95.4 Plus
CG33827-PA 411 His3:CG33827-RA 187..230 203..246 170 95.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:50:23
Subject Length Description Subject Range Query Range Score Percent Strand
His3.3B-RE 2114 CG8989-RE 113..525 15..427 2065 100 Plus
His3.3B-RB 1537 CG8989-RB 251..663 15..427 2065 100 Plus
His3.3B-RC 1519 CG8989-RC 233..645 15..427 2065 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:50:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9154379..9154663 299..15 1425 100 Minus
2L 23513712 2L 5055259..5055541 17..299 875 87.3 Plus
2L 23513712 2L 21430312..21430722 17..427 735 78.6 Plus
2L 23513712 2L 21420186..21420596 17..427 735 78.6 Plus
2L 23513712 2L 21425250..21425660 17..427 735 78.6 Plus
2L 23513712 2L 21435356..21435766 17..427 735 78.6 Plus
2L 23513712 2L 21440244..21440654 17..427 735 78.6 Plus
2L 23513712 2L 21494932..21495342 17..427 735 78.6 Plus
2L 23513712 2L 21454445..21454855 17..427 735 78.6 Plus
2L 23513712 2L 21484738..21485148 17..427 735 78.6 Plus
2L 23513712 2L 21489887..21490297 17..427 735 78.6 Plus
2L 23513712 2L 21499977..21500387 17..427 735 78.6 Plus
2L 23513712 2L 21505030..21505440 17..427 735 78.6 Plus
2L 23513712 2L 21510075..21510485 17..427 735 78.6 Plus
2L 23513712 2L 21515119..21515529 17..427 735 78.6 Plus
2L 23513712 2L 21520166..21520576 17..427 735 78.6 Plus
2L 23513712 2L 21525009..21525419 17..427 735 78.6 Plus
2L 23513712 2L 21529852..21530262 17..427 735 78.6 Plus
2L 23513712 2L 21534693..21535103 17..427 735 78.6 Plus
2L 23513712 2L 21541210..21541620 17..427 735 78.6 Plus
2L 23513712 2L 21459504..21459914 17..427 720 78.3 Plus
2L 23513712 2L 21464564..21464974 17..427 720 78.3 Plus
2L 23513712 2L 21469607..21470017 17..427 720 78.3 Plus
2L 23513712 2L 21474650..21475060 17..427 720 78.3 Plus
2L 23513712 2L 21479693..21480103 17..427 720 78.3 Plus
X 23542271 X 9154112..9154247 427..292 665 99.3 Minus
2L 23513712 2L 21405669..21405970 126..427 580 79.5 Plus
2L 23513712 2L 5055640..5055760 308..428 365 86.8 Plus
3R 32079331 3R 1431192..1431302 307..417 210 79.3 Plus
Blast to na_te.dros performed on 2015-02-12 11:50:20 has no hits.

BS15417.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:26:18 Download gff for BS15417.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8989-PA 1..411 17..427 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:02:53 Download gff for BS15417.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8989-PA 1..411 17..427 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 23:21:00 Download gff for BS15417.5prime
Subject Subject Range Query Range Percent Splice Strand
His3.3B-RC 233..645 15..427 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:52:58 Download gff for BS15417.5prime
Subject Subject Range Query Range Percent Splice Strand
His3.3B-RC 233..645 15..427 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:52:58 Download gff for BS15417.5prime
Subject Subject Range Query Range Percent Splice Strand
X 9154380..9154663 15..298 100   Minus
X 9154112..9154240 299..427 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 23:21:00 Download gff for BS15417.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9048145..9048273 299..427 100 <- Minus
arm_X 9048413..9048696 15..298 100   Minus

BS15417.3prime Sequence

441 bp (441 high quality bases) assembled on 2006-12-21

> BS15417.3prime
ATGGTCTAGAAAGCTTTTACCCTCGCTCGCCACGGATGCGGCGCGCCAAC
TGGATGTCCTTAGGCATGATTGTCACGCGCTTGGCGTGGATAGCGCACAA
GTTGGTGTCCTCGAAGAGACCCACCAGGTACGCCTCAGATGCTTCCTGCA
AGGCACCGATGGCAGCCGACTGGAAACGCAGATCGGTCTTGAAATCCTGA
GCGATTTCACGAACCAGACGCTGGAAGGGCAGCTTGCGGATGAGCAACTC
GGTCGACTTCTGGTAACGACGGATCTCACGAAGAGCCACAGTTCCGGGAC
GATAACGATGGGGCTTCTTCACTCCGCCGGTGGATGGCGCCGATTTACGG
GCAGCCTTGGTGGCTAGCTGCTTACGAGGAGCCTTTCCTCCGGTCGACTT
ACGGGCAGTCTGCTTAGTACGAGCCATGTCGACTGATAACT

BS15417.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:20:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG8989-PA 411 His3.3B-RA 1..404 427..24 2020 100 Minus
CG8989-PC 411 His3.3B-RC 1..404 427..24 2020 100 Minus
CG8989-PB 411 His3.3B-RB 1..404 427..24 2020 100 Minus
CG5825-PA 411 His3.3A-RA 1..215 427..213 475 88.8 Minus
CG5825-PB 372 His3.3A-RB 1..215 427..213 475 88.8 Minus
CG5825-PA 411 His3.3A-RA 292..378 136..50 185 88.5 Minus
CG31613-PA 411 His3:CG31613-RA 187..233 241..195 185 95.7 Minus
CG33803-PA 411 His3:CG33803-RA 187..233 241..195 185 95.7 Minus
CG33806-PA 411 His3:CG33806-RA 187..233 241..195 185 95.7 Minus
CG33809-PA 411 His3:CG33809-RA 187..233 241..195 185 95.7 Minus
CG33848-PA 411 His3:CG33848-RA 187..233 241..195 185 95.7 Minus
CG33863-PA 411 His3:CG33863-RA 187..233 241..195 185 95.7 Minus
CG33812-PA 411 His3:CG33812-RA 187..233 241..195 185 95.7 Minus
CG33815-PA 411 His3:CG33815-RA 187..233 241..195 185 95.7 Minus
CG33833-PA 411 His3:CG33833-RA 187..233 241..195 185 95.7 Minus
CG33836-PA 411 His3:CG33836-RA 187..233 241..195 185 95.7 Minus
CG33839-PA 411 His3:CG33839-RA 187..233 241..195 185 95.7 Minus
CG33842-PA 411 His3:CG33842-RA 187..233 241..195 185 95.7 Minus
CG33845-PA 411 His3:CG33845-RA 187..233 241..195 185 95.7 Minus
CG33851-PA 411 His3:CG33851-RA 187..233 241..195 185 95.7 Minus
CG33854-PA 411 His3:CG33854-RA 187..233 241..195 185 95.7 Minus
CG33857-PA 411 His3:CG33857-RA 187..233 241..195 185 95.7 Minus
CG33860-PA 411 His3:CG33860-RA 187..233 241..195 185 95.7 Minus
CG33866-PA 411 His3:CG33866-RA 187..233 241..195 185 95.7 Minus
CG33830-PA 411 His3:CG33830-RA 187..230 241..198 170 95.4 Minus
CG33821-PA 411 His3:CG33821-RA 187..230 241..198 170 95.4 Minus
CG33824-PA 411 His3:CG33824-RA 187..230 241..198 170 95.4 Minus
CG33818-PA 411 His3:CG33818-RA 187..230 241..198 170 95.4 Minus
CG33827-PA 411 His3:CG33827-RA 187..230 241..198 170 95.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:56:55
Subject Length Description Subject Range Query Range Score Percent Strand
His3.3B-RE 2114 CG8989-RE 113..518 429..24 2030 100 Minus
His3.3B-RB 1537 CG8989-RB 251..656 429..24 2030 100 Minus
His3.3B-RC 1519 CG8989-RC 233..638 429..24 2030 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:56:50
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9154379..9154663 145..429 1425 100 Plus
2L 23513712 2L 5055259..5055541 427..145 875 87.3 Minus
2L 23513712 2L 21420186..21420589 427..24 700 78.2 Minus
2L 23513712 2L 21425250..21425653 427..24 700 78.2 Minus
2L 23513712 2L 21430312..21430715 427..24 700 78.2 Minus
2L 23513712 2L 21435356..21435759 427..24 700 78.2 Minus
2L 23513712 2L 21440244..21440647 427..24 700 78.2 Minus
2L 23513712 2L 21454445..21454848 427..24 700 78.2 Minus
2L 23513712 2L 21484738..21485141 427..24 700 78.2 Minus
2L 23513712 2L 21489887..21490290 427..24 700 78.2 Minus
2L 23513712 2L 21494932..21495335 427..24 700 78.2 Minus
2L 23513712 2L 21499977..21500380 427..24 700 78.2 Minus
2L 23513712 2L 21505030..21505433 427..24 700 78.2 Minus
2L 23513712 2L 21510075..21510478 427..24 700 78.2 Minus
2L 23513712 2L 21515119..21515522 427..24 700 78.2 Minus
2L 23513712 2L 21520166..21520569 427..24 700 78.2 Minus
2L 23513712 2L 21525009..21525412 427..24 700 78.2 Minus
2L 23513712 2L 21529852..21530255 427..24 700 78.2 Minus
2L 23513712 2L 21534693..21535096 427..24 700 78.2 Minus
2L 23513712 2L 21541210..21541613 427..24 700 78.2 Minus
2L 23513712 2L 21459504..21459907 427..24 685 78 Minus
2L 23513712 2L 21464564..21464967 427..24 685 78 Minus
2L 23513712 2L 21469607..21470010 427..24 685 78 Minus
2L 23513712 2L 21474650..21475053 427..24 685 78 Minus
2L 23513712 2L 21479693..21480096 427..24 685 78 Minus
X 23542271 X 9154119..9154247 24..152 630 99.2 Plus
2L 23513712 2L 21405669..21405963 318..24 545 79 Minus
2L 23513712 2L 5055640..5055752 136..24 355 87.6 Minus
3R 32079331 3R 1431192..1431302 137..27 210 79.3 Minus
Blast to na_te.dros performed on 2015-02-12 16:56:54 has no hits.

BS15417.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:26:17 Download gff for BS15417.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8989-PA 1..411 17..427 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:02:51 Download gff for BS15417.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8989-PA 1..411 17..427 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 23:31:17 Download gff for BS15417.3prime
Subject Subject Range Query Range Percent Splice Strand
His3.3B-RC 228..645 17..434 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:42:32 Download gff for BS15417.3prime
Subject Subject Range Query Range Percent Splice Strand
His3.3B-RC 228..645 17..434 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:42:32 Download gff for BS15417.3prime
Subject Subject Range Query Range Percent Splice Strand
X 9154380..9154668 146..434 98   Plus
X 9154112..9154240 17..145 97 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 23:31:17 Download gff for BS15417.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9048145..9048273 17..145 97 <- Plus
arm_X 9048413..9048701 146..434 98   Plus

BS15417.complete Sequence

443 bp assembled on 2006-11-29

GenBank Submission: FJ637932

> BS15417.complete
GAAGTTATCAGTCGACATGGCTCGTACTAAGCAGACTGCCCGTAAGTCGA
CCGGAGGAAAGGCTCCTCGTAAGCAGCTAGCCACCAAGGCTGCCCGTAAA
TCGGCGCCATCCACCGGCGGAGTGAAGAAGCCCCATCGTTATCGTCCCGG
AACTGTGGCTCTTCGTGAGATCCGTCGTTACCAGAAGTCGACCGAGTTGC
TCATCCGCAAGCTGCCCTTCCAGCGTCTGGTTCGTGAAATCGCTCAGGAT
TTCAAGACCGATCTGCGTTTCCAGTCGGCTGCCATCGGTGCCTTGCAGGA
AGCATCTGAGGCGTACCTGGTGGGTCTCTTCGAGGACACCAACTTGTGCG
CTATCCACGCCAAGCGCGTGACAATCATGCCTAAGGACATCCAGTTGGCG
CGCCGCATCCGTGGCGAGCGTGCTTAAAAGCTTTCTAGACCAT

BS15417.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:22:39
Subject Length Description Subject Range Query Range Score Percent Strand
His3.3B-RE 411 CG8989-PE 1..411 17..427 2055 100 Plus
His3.3B-RB 411 CG8989-PB 1..411 17..427 2055 100 Plus
His3.3B-RC 411 CG8989-PC 1..411 17..427 2055 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:22:41
Subject Length Description Subject Range Query Range Score Percent Strand
His3.3B-RE 2114 CG8989-RE 113..525 15..427 2065 100 Plus
His3.3B-RB 1537 CG8989-RB 251..663 15..427 2065 100 Plus
His3.3B-RC 1519 CG8989-RC 233..645 15..427 2065 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:22:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9154379..9154663 299..15 1425 100 Minus
2L 23513712 2L 5055259..5055541 17..299 875 87.3 Plus
2L 23513712 2L 21420186..21420596 17..427 735 78.6 Plus
2L 23513712 2L 21425250..21425660 17..427 735 78.6 Plus
2L 23513712 2L 21430312..21430722 17..427 735 78.6 Plus
2L 23513712 2L 21435356..21435766 17..427 735 78.6 Plus
2L 23513712 2L 21440244..21440654 17..427 735 78.6 Plus
2L 23513712 2L 21454445..21454855 17..427 735 78.6 Plus
2L 23513712 2L 21484738..21485148 17..427 735 78.6 Plus
2L 23513712 2L 21489887..21490297 17..427 735 78.6 Plus
2L 23513712 2L 21494932..21495342 17..427 735 78.6 Plus
2L 23513712 2L 21499977..21500387 17..427 735 78.6 Plus
2L 23513712 2L 21505030..21505440 17..427 735 78.6 Plus
2L 23513712 2L 21510075..21510485 17..427 735 78.6 Plus
2L 23513712 2L 21515119..21515529 17..427 735 78.6 Plus
2L 23513712 2L 21520166..21520576 17..427 735 78.6 Plus
2L 23513712 2L 21525009..21525419 17..427 735 78.6 Plus
2L 23513712 2L 21529852..21530262 17..427 735 78.6 Plus
2L 23513712 2L 21534693..21535103 17..427 735 78.6 Plus
2L 23513712 2L 21541210..21541620 17..427 735 78.6 Plus
2L 23513712 2L 21459504..21459914 17..427 720 78.3 Plus
2L 23513712 2L 21464564..21464974 17..427 720 78.3 Plus
2L 23513712 2L 21469607..21470017 17..427 720 78.3 Plus
2L 23513712 2L 21474650..21475060 17..427 720 78.3 Plus
2L 23513712 2L 21479693..21480103 17..427 720 78.3 Plus
X 23542271 X 9154112..9154247 427..292 665 99.3 Minus
2L 23513712 2L 21405669..21405970 126..427 580 79.5 Plus
2L 23513712 2L 5055640..5055760 308..428 365 86.8 Plus
3R 32079331 3R 1431192..1431302 307..417 210 79.3 Plus
Blast to na_te.dros performed on 2014-11-28 01:22:39 has no hits.

BS15417.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:46:31 Download gff for BS15417.complete
Subject Subject Range Query Range Percent Splice Strand
His3.3B-RB 1..411 17..427 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:34:13 Download gff for BS15417.complete
Subject Subject Range Query Range Percent Splice Strand
His3.3B-RB 239..656 10..427 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:47:58 Download gff for BS15417.complete
Subject Subject Range Query Range Percent Splice Strand
His3.3B-RC 235..643 17..425 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:46:31 Download gff for BS15417.complete
Subject Subject Range Query Range Percent Splice Strand
His3.3B-RB 239..656 10..427 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:52:27 Download gff for BS15417.complete
Subject Subject Range Query Range Percent Splice Strand
His3.3B-RC 235..643 17..425 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:52:27 Download gff for BS15417.complete
Subject Subject Range Query Range Percent Splice Strand
X 9154114..9154240 299..425 100 <- Minus
X 9154380..9154661 17..298 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:47:58 Download gff for BS15417.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9048147..9048273 299..425 100 <- Minus
arm_X 9048413..9048694 17..298 100   Minus

BS15417.pep Sequence

Translation from 16 to 426

> BS15417.pep
MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALR
EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAY
LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA*

BS15417.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:53:10
Subject Length Description Subject Range Query Range Score Percent Strand
His3.3A-PD 136 CG5825-PD 1..136 1..136 676 100 Plus
His3.3A-PC 136 CG5825-PC 1..136 1..136 676 100 Plus
His3.3A-PA 136 CG5825-PA 1..136 1..136 676 100 Plus
His3.3B-PE 136 CG8989-PE 1..136 1..136 676 100 Plus
His3.3B-PB 136 CG8989-PB 1..136 1..136 676 100 Plus