Clone BS15419 Report

Search the DGRC for BS15419

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:154
Well:19
Vector:pDNR-Dual
Associated Gene/TranscriptCG31633-RA
Protein status:BS15419.pep: full length peptide match
Sequenced Size:1259

Clone Sequence Records

BS15419.3prime Sequence

860 bp (779 high quality bases) assembled on 2006-12-21

> BS15419.3prime
ATGGTCTAGAAAGCTTTCACGACTCGGGGCGTTTAAATTCCAATTCAATA
CATTCGTCAGGTAATTGTGAATAGCTGCTACTAGTAGCACTGAAGGAAAC
ATTAAGTTTGGGATGTTTAAAGTGCTTCGAAACCAAGTCATCCTTGCCGG
TTTTATAAAAATGCATTTTCAAAGGCTTCGTTCGCTGATTTAGAGCGCGG
TTCATTGTTGACTTGCTGAAGGCAAAGAACTCGTCGTACAAAACATGGTT
GATCATGCTGAATTCCCTGAGACGGGGACAGGCAAGAAGCACGTCCCATA
TACCATCGGCGTTGACCCATATACGCGAGTTCTCCAGATGCAGTTGCTCC
AAGAGCGGAAAGCAATAGGTGATCGTGGAAAAGTCAATGGCAGCACATCC
TTCATCATCGACGAGAGTTAAACATCGGAGATTTCGCAGTTTGGCCAGCA
CCTCCGTTGGCCTCATCCAGATATTATTACTGAATGCGGCAGTCAACACA
TCTTGACCCCTTATGCTTCCAATTTCGCACAGTAGATCGTCCACCTGGTA
GAAGTTGTGCAGGCGCAGCTTTATCAGTTTAGGCAGGCTCAACAGTTGGC
TGATGTTGTCCCTGTTTAGGTAAACTATGTCCAGCTCCAGCTCCTCCAGT
TCATGCAGCATACAGATGGATCGCACGTATGCATTCTGTTCGATCTTTTG
CCACTGGATACTGAGTGTCTGTAGTCGCAGGTTTTGACAGATATCCTCGA
AGCCCTGCGGGCTCAGGTACCAGCACAGCTGAAGGTCCAGTCGGCGAATG
TTCCGCCCACGACTGATGTGGTTACCAGTAGTCTTCCCGCTCAGCCTGAT
GGCTTTCAGC

BS15419.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:20:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG31633-PA 1227 CG31633-RA 389..1227 855..17 4170 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 13:55:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG31633-RA 1452 CG31633-RA 472..1315 860..17 4190 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 13:55:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6655068..6655796 132..860 3615 99.7 Plus
2L 23513712 2L 6654897..6655014 17..134 590 100 Plus
Blast to na_te.dros performed on 2015-02-02 13:55:40 has no hits.

BS15419.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:26:22 Download gff for BS15419.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31633-PA 384..1227 17..860 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:02:57 Download gff for BS15419.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31633-PA 384..1227 17..860 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:12:17 Download gff for BS15419.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31633-RA 472..1315 17..860 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:49:57 Download gff for BS15419.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31633-RA 472..1315 17..860 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:49:57 Download gff for BS15419.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 6654897..6655013 17..133 100 <- Plus
2L 6655070..6655796 134..860 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:12:17 Download gff for BS15419.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6654897..6655013 17..133 100 <- Plus
arm_2L 6655070..6655796 134..860 99   Plus

BS15419.5prime Sequence

291 bp (257 high quality bases) assembled on 2006-12-21

> BS15419.5prime
GAAGTTATCCCTCGACATGGCACTCATTGAGAACCTCAATGATGACTGCG
TGCTTAAAATTGTAGATTACCTCGATCTGGAGGATCAGCTGAAGCTGTGG
AAGAGTTCCGAGCCCGCATCGCGACTGAGATCGCTGATATCCTACATCTG
GCAGCGCAATCGGGAATATACCATTGACTATTATACATTCAATGACGACT
ATGAGCTACTGAACGAATTCCTGCAGTGCATTCGCTTCACGGTGACGGAA
CTTACACTCCNATACCTAGCCATGGATCACCTGGAGCGGTG

BS15419.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:20:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG31633-PA 1227 CG31633-RA 1..275 17..291 1356 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:48:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG31633-RA 1452 CG31633-RA 87..363 15..291 1374 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:48:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6655905..6656141 291..55 1174 99.6 Minus
2L 23513712 2L 6656196..6656235 54..15 200 100 Minus
Blast to na_te.dros performed on 2015-02-11 15:48:11 has no hits.

BS15419.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:26:23 Download gff for BS15419.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31633-PA 1..275 17..291 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:02:59 Download gff for BS15419.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31633-PA 1..275 17..291 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 03:48:23 Download gff for BS15419.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31633-RA 87..363 15..291 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:30:46 Download gff for BS15419.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31633-RA 87..363 15..291 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:30:46 Download gff for BS15419.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 6655905..6656141 55..291 99 <- Minus
2L 6656196..6656235 15..54 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 03:48:23 Download gff for BS15419.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6655905..6656141 55..291 99 <- Minus
arm_2L 6656196..6656235 15..54 100   Minus

BS15419.complete Sequence

1259 bp assembled on 2009-08-24

GenBank Submission: KX802206

> BS15419.complete
GAAGTTATCAGTCGACATGGCACTCATTGAGAACCTCAATGATGACTGCG
TGCTTAAAATTGTAGATTACCTCGATCTGGAGGATCAGCTGAAGCTGTGG
AAGAGTTCCGAGCCCGCATCGCGACTGAGATCGCTGATATCCTACATCTG
GCAGCGCAATCGGGAATATACCATTGACTATTATACATTCAATGACGACT
ATGAGCTACTGAACGAATTCCTGCAGTGCATTCGCTTCACGGTGACGGAA
CTTACACTCCAATACCTAGCCATGGATCACCTGGAGCGGTGGAAGGGTCA
CACCTTCCCCAACATGCGTCAATTGATCTACTTGGGCGATGAGACCAGTG
AAATAGAAGGAGACGCCGACATCGCCATTCTGGTGGACTGCTTCCCGCAG
CTGGAAGCCATCAGGCTGAGCGGGAAGACTACTGGTAACCACATCAGTCG
TTGGCGGAACATTCGCCGACTGGACCTTCAGCTGTGCTGGTACCTGAGCC
CGCAGGGCTTCGAGGATATCTGTCAAAACCTGCGACTACAGACACTCAGT
ATCCAGTGGCAAAAGATCGAACAGAATGCATACGTGCGATCCATCTGTAT
GCTGCATGAACTGGAGGAGCTGGAGCTGGACATAGTTTACCTAAACAGGG
ACAACATCAGCCAACTGTTGAGCCTGCCTAAACTGATAAAGCTGCGCCTG
CACAACTTCTACCAGGTGGACGATCTACTGTGCGAAATTGGAAGCATAAG
GGGTCAAGATGTGTTGACTGCCGCATTCAGTAATAATATCTGGATGAGGC
CAACGGAGGTGCTGGCCAAACTGCGAAATCTCCGATGTTTAACTCTCGTC
GATGATGAAGGATGTGCTGCCATTGACTTTTCCACGATCACCTATTGCTT
TCCGCTCTTGGAGCAACTGCATCTGGAGAACTCGCGTATATGGGTCAACG
CCGATGGTATATGGGACGTGCTTCTTGCCTGTCCCCGTCTCAGGGAATTC
AGCATGATCAACCATGTTTTGTACGACGAGTTCTTTGCCTTCAGCAAGTC
AACAATGAACCGCGCTCTAAATCAGCGAACGAAGCCTTTGAAAATGCATT
TTTATAAAACCGGCAAGGATGACTTGGTTTCGAAGCACTTTAAACATCCC
AAACTTAATGTTTCCTTCAGTGCTACTAGTAGCAGCTATTCACAATTACC
TGACGAATGTATTGAATTGGAATTTAAACGCCCCGAGTCGTGAAAGCTTT
CTAGACCAT

BS15419.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:36:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG31633-RA 1227 CG31633-PA 1..1227 17..1243 6135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:36:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG31633-RA 1452 CG31633-RA 87..1315 15..1243 6145 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:36:18
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6655068..6656141 1128..55 5370 100 Minus
2L 23513712 2L 6654897..6655014 1243..1126 590 100 Minus
2L 23513712 2L 6656196..6656235 54..15 200 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:36:19 has no hits.

BS15419.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:39 Download gff for BS15419.complete
Subject Subject Range Query Range Percent Splice Strand
CG31633-RA 69..1294 17..1242 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:52:29 Download gff for BS15419.complete
Subject Subject Range Query Range Percent Splice Strand
CG31633-RA 89..1314 17..1242 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:52:32 Download gff for BS15419.complete
Subject Subject Range Query Range Percent Splice Strand
CG31633-RA 89..1314 17..1242 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:52:32 Download gff for BS15419.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6654898..6655013 1127..1242 100 <- Minus
2L 6655070..6656141 55..1126 100 <- Minus
2L 6656196..6656233 17..54 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:52:29 Download gff for BS15419.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6654898..6655013 1127..1242 100 <- Minus
arm_2L 6655070..6656141 55..1126 100 <- Minus
arm_2L 6656196..6656233 17..54 100   Minus

BS15419.pep Sequence

Translation from 16 to 1242

> BS15419.pep
MALIENLNDDCVLKIVDYLDLEDQLKLWKSSEPASRLRSLISYIWQRNRE
YTIDYYTFNDDYELLNEFLQCIRFTVTELTLQYLAMDHLERWKGHTFPNM
RQLIYLGDETSEIEGDADIAILVDCFPQLEAIRLSGKTTGNHISRWRNIR
RLDLQLCWYLSPQGFEDICQNLRLQTLSIQWQKIEQNAYVRSICMLHELE
ELELDIVYLNRDNISQLLSLPKLIKLRLHNFYQVDDLLCEIGSIRGQDVL
TAAFSNNIWMRPTEVLAKLRNLRCLTLVDDEGCAAIDFSTITYCFPLLEQ
LHLENSRIWVNADGIWDVLLACPRLREFSMINHVLYDEFFAFSKSTMNRA
LNQRTKPLKMHFYKTGKDDLVSKHFKHPKLNVSFSATSSSYSQLPDECIE
LEFKRPES*

BS15419.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:35:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG31633-PA 408 CG31633-PA 1..408 1..408 2158 100 Plus
CG13088-PA 401 CG13088-PA 1..380 4..384 365 29 Plus