Clone Sequence Records
BS15422.complete Sequence
1742 bp assembled on 2009-12-07
GenBank Submission: KX805222
> BS15422.complete
GAAGTTATCACTCGACATGAGCTTCACCAAGTGGTTCAAGAAGAAGGGCG
GAGATGGGGGATCGATCTCAGAGATCGGTGCACCCACAAACTTCCAACGG
CACTTCCATGTCTCGCGCAACCAGGAAACCGGCGACCTGGAGGGGCTTCC
AGCTCCATGGGTGCGCCTAATGAACTCACAGATCACTCGCGATGAGCAGG
ACAAGAATCCAGATGCTGCCTACCATGCCGTTAAGTACTACAACTATTCG
ATTAAGAAGAAAGAGAACGAGGTCTTCAAGCCCTTCATCACCGAAGATGT
GATCCACGAGGAGTCCAAGGAGATAGAAAACTATGTCAACTACAAAAACA
AGCACAAGTCTCAGGATCCCGAAAAGTCCGACGACGATGGCAGTTCGACG
GCCACGGAGACGGAAAGTAGCAGCGGTTGTGGCTCCTCGGCAGGTAATAG
TAACAGCAGCAGCATCAACGACAGCAGCCAGCAGTCGACGGTGCCGCTGG
ACGCCCTAGAGGAGGTGTTCAAGGAGCTCAAGACCAATCTGGAGCACCGC
GAAACGCTGAAGGCCGCACCGCAAGAGCCTCCACCAGTACCGCCCAAGAA
ATCGCCCCACACCATACCGCCCAAACCGCAAATCAAGCCCAAACCTCGTG
TCACACAGAAGTTCTCACGCACTTCGGATATACGTCGAGATGAGGACTCC
GACAACCAGCACAAGATCAACACAGACACAATCATCATCAAGCCAGCCGT
AGGGGCCCAGGATGCTGGAGCGGATGATAATCCCGACGAGACGATACTGC
GCCGCTCCAAGGAGAAGAGGGCCCAGAAAACCGATGCCGAAATCTACGTT
GAGCTGCGGGCAATTTGCAATTCAGATGACCCAAGGGAACGCTACAAGAC
CACCCAGGAGGTGGGCAAGGGAGCTTCTGGCATAGTTTTCATAGCCGCCG
ATTTGCAGAACGAATCGCAGGTGGCCGTCAAGACCATCGATATGAAGAAC
CAGTCCTCGAAGGATCTCATACTCACAGAAATCCGAGTGCTCAAGGACTT
CAACCACAAGAATCTGGTAAACTTTCTGGATGCCTACCTTCTGGAGCCCG
AGGACCAACTGTGGGTAGTCATGGAGTACATGGATGGCGGCCCATTGACT
GACGTCGTTACCGAGACTGTGATGAAGGAGCGCCAGATTGCCTGCGTCTG
CCGCGAGACACTCTACGCTATTAGTTTTCTGCACGCTAAGGGCATTATCC
ACCGGGACATCAAGTCAGACAACGTGCTGCTGGGCATGGATGGCAGTGTT
AAGGTGACGGACTTTGGGTTCTGCGCCAACATCGAGGGCGATGAGAAGCG
CCAGACAATGGTGGGAACGCCGTACTGGATGGCGCCCGAAGTGGTCACGC
GCAAGAAGTACGGCAAGAAGGTGGACATCTGGTCTATCGGCATCATGGCC
ATCGAGATGATCGAAGGCCAGCCACCCTACCTATACGAGACTCCACTCCG
CGCCCTCTACCTGATCGCCGCCAACGGTCGGCCGGATATCAAGAGCTGGG
ATAAGCTGAGTCCCAACCTTCAAGACTTTCTCGATCGCTGTCTCCAGGTG
GAGGTGGACCGAAGGGCCACCGCCGACGAGTTGCTCAGCCATCCGTTCCT
CAACGACTGCAGCGAGGTCAAGGCCCTCGTGCCCAACATCAAGGCGGCCA
AGAAGGTGCTCCGACGCAACGTATAGAAGCTTTCTAGACCAT
BS15422.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:22:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pak3-RC | 1710 | CG14895-PC | 1..1710 | 17..1726 | 8550 | 100 | Plus |
| Pak3-RD | 1752 | CG14895-PD | 1..1710 | 17..1726 | 8550 | 100 | Plus |
| Pak3-RA | 1710 | CG14895-PA | 1..1710 | 17..1726 | 8550 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:22:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pak3-RC | 4983 | CG14895-RC | 912..2621 | 17..1726 | 8550 | 100 | Plus |
| Pak3-RD | 4983 | CG14895-RD | 912..2621 | 17..1726 | 8550 | 100 | Plus |
| Pak3-RA | 3244 | CG14895-RA | 912..2621 | 17..1726 | 8550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:22:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16451201..16452910 | 1726..17 | 8550 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:22:07 has no hits.
BS15422.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:48:56 Download gff for
BS15422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pak3-RA | 919..2628 | 17..1726 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:12:34 Download gff for
BS15422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pak3-RA | 912..2621 | 17..1726 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:05:32 Download gff for
BS15422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pak3-RA | 919..2628 | 17..1726 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:09:58 Download gff for
BS15422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pak3-RA | 912..2621 | 17..1726 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:09:58 Download gff for
BS15422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16451201..16452910 | 17..1726 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:12:34 Download gff for
BS15422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12276923..12278632 | 17..1726 | 100 | | Minus |
BS15422.3prime Sequence
801 bp (651 high quality bases) assembled on 2006-12-21
> BS15422.3prime
ATGGTCTAGAAAGCTTCTATCCTTTGCGTCGGAGCACCTTCTTGGCCGCC
TTGATGTTGGGCACGAGGGCCTTGACCTCGCTGCAGTCGTTGAGGAACGG
ATGGCTGAGCAACTCGTCGGCGGTGGCCCTTCGGTCCACCTCCACCTGGA
GACAGCGATCGAGAAAGTCTTGAAGGTTGGGACTCAGCTTATCCCAGCTC
TTGATATCCGGCCGACCGTTGGCGGCGATCAGGTAGAGGGCGCGGAGTGG
AGTCTCGTATAGGTAGGGTGGCTGGCCTTCGATCATCTCGATGGCCATGA
TGCCGATAGACCAGATGTCCACCTTCTTGCCGTACTTCTTGCGCGTGACC
ACTTCGGGCGCCATCCAGTACGGCGTTCCCACCATTGTCTGGCGCTTCTC
ATCGCCCTCGATGTTGGCGCAGAACCCAAAGTCCGTCACCTTAACACTGC
CATCCATGCCCAGCAGCACGTTGTCTGACTTGATGTCCCGGTGGATAATG
CCCTTAGCGTGCAGAAAACTAATAGCGTAGAGTGTCTCGCGGCAGACGCA
GGCAATCTGGCGCTCCTTCATCACAGTCTCGGTAACGACGTCAGTCAATG
GGCCGCCATCCATGTACTCCATGACTACCCACAGTTGGTCCTCGGGCTCC
AGAAGGTAGGCATCCAGAAAGTTTACCAGATTCTTGTGGTTGAAGTCCTT
GAGCACTCGGATTTCTGTGAGTATGAGATCCTTCGAGGACTGGTTCTTCA
TATCGATGGTCTTGACGGCCACCTGCGATTCGTTCTGCAAATCGGCGGCT
A
BS15422.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:20:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14895-PA | 1710 | Pak3-RA | 926..1703 | 801..24 | 3890 | 100 | Minus |
| CG14895-PB | 1218 | Pak3-RB | 434..1211 | 801..24 | 3890 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:56:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pak3-RC | 4983 | CG14895-RC | 1837..2621 | 801..17 | 3895 | 99.7 | Minus |
| Pak3-RD | 4983 | CG14895-RD | 1837..2621 | 801..17 | 3895 | 99.7 | Minus |
| Pak3-RA | 3244 | CG14895-RA | 1837..2621 | 801..17 | 3895 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:56:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16451201..16451985 | 17..801 | 3895 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:56:14 has no hits.
BS15422.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:26:25 Download gff for
BS15422.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pak3-PB | 435..1218 | 17..800 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:03:02 Download gff for
BS15422.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14895-PB | 435..1218 | 17..800 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 16:38:03 Download gff for
BS15422.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pak3-RA | 1838..2626 | 12..800 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:28:16 Download gff for
BS15422.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pak3-RA | 1838..2626 | 12..800 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:28:16 Download gff for
BS15422.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16451196..16451984 | 12..800 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 16:38:03 Download gff for
BS15422.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12276918..12277706 | 12..800 | 99 | | Plus |
BS15422.5prime Sequence
825 bp (785 high quality bases) assembled on 2006-12-21
> BS15422.5prime
GAAGTTATCACTCGACATGAGCTTCACCAAGTGGTTCAAGAAGAAGGGCG
GAGATGGGGGATCGATCTCAGAGATCGGTGCACCCACAAACTTCCAACGG
CACTTCCATGTCTCGCGCAACCAGGAAACCGGCGACCTGGAGGGGCTTCC
AGCTCCATGGGTGCGCCTAATGAACTCACAGATCACTCGCGATGAGCAGG
ACAAGAATCCAGATGCTGCCTACCATGCCGTTAAGTACTACAACTATTCG
ATTAAGAAGAAAGAGAACGAGGTCTTCAAGCCCTTCATCACCGAAGATGT
GATCCACGAGGAGTCCAAGGAGATAGAAAACTATGTCAACTACAAAAACA
AGCACAAGTCTCAGGATCCCGAAAAGTCCGACGACGATGGCAGTTCGACG
GCCACGGAGACGGAAAGTAGCAGCGGTTGTGGCTCCTCGGCAGGTAATAG
TAACAGCAGCAGCATCAACGACAGCAGCCAGCAGTCGACGGTGCCGCTGG
ACGCCCTAGAGGAGGTGTTCAAGGAGCTCAAGACCAATCTGGAGCACCGC
GAAACGCTGAAGGCCGCACCGCAAGAGCCTCCACCAGTACCGCCCAAGAA
ATCGCCCCACACCATACCGCCCAAACCGCAAATCAAGCCCAAACCTCGTG
TCACACAGAAGTTCTCACGCACTTCGGATATACGTCGAGATGAGGACTCC
GACAACCAGCACAAGATCAACACAGACACAATCATCATCAAGCCAGCCGT
AGGGGCCCAGGATGCTGGAGCGGATGATAATCCCGACGAGACGATACTGC
GCCGCTCCAAGGAGAAGAGGGCCCA
BS15422.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:20:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14895-PA | 1710 | Pak3-RA | 1..809 | 17..825 | 4045 | 100 | Plus |
| CG14895-PB | 1218 | Pak3-RB | 1..282 | 17..298 | 1410 | 100 | Plus |
| CG14895-PB | 1218 | Pak3-RB | 283..317 | 791..825 | 175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:45:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pak3-RC | 4983 | CG14895-RC | 912..1720 | 17..825 | 4045 | 100 | Plus |
| Pak3-RD | 4983 | CG14895-RD | 912..1720 | 17..825 | 4045 | 100 | Plus |
| Pak3-RA | 3244 | CG14895-RA | 912..1720 | 17..825 | 4045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:44:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16452102..16452910 | 825..17 | 4045 | 100 | Minus |
Blast to na_te.dros performed 2015-01-30 16:44:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6864..6900 | 449..483 | 108 | 81.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6732..6763 | 452..484 | 108 | 84.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6753..6784 | 452..484 | 108 | 84.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6774..6805 | 452..484 | 108 | 84.8 | Plus |
BS15422.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:26:26 Download gff for
BS15422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pak3-PA | 1..808 | 17..824 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:03:04 Download gff for
BS15422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14895-PA | 1..808 | 17..824 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 15:52:57 Download gff for
BS15422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pak3-RA | 905..1719 | 11..824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 19:09:57 Download gff for
BS15422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pak3-RA | 905..1719 | 11..824 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 19:09:57 Download gff for
BS15422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16452103..16452917 | 11..824 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 15:52:57 Download gff for
BS15422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12277825..12278639 | 11..824 | 99 | | Minus |
BS15422.pep Sequence
Translation from 16 to 1725
> BS15422.pep
MSFTKWFKKKGGDGGSISEIGAPTNFQRHFHVSRNQETGDLEGLPAPWVR
LMNSQITRDEQDKNPDAAYHAVKYYNYSIKKKENEVFKPFITEDVIHEES
KEIENYVNYKNKHKSQDPEKSDDDGSSTATETESSSGCGSSAGNSNSSSI
NDSSQQSTVPLDALEEVFKELKTNLEHRETLKAAPQEPPPVPPKKSPHTI
PPKPQIKPKPRVTQKFSRTSDIRRDEDSDNQHKINTDTIIIKPAVGAQDA
GADDNPDETILRRSKEKRAQKTDAEIYVELRAICNSDDPRERYKTTQEVG
KGASGIVFIAADLQNESQVAVKTIDMKNQSSKDLILTEIRVLKDFNHKNL
VNFLDAYLLEPEDQLWVVMEYMDGGPLTDVVTETVMKERQIACVCRETLY
AISFLHAKGIIHRDIKSDNVLLGMDGSVKVTDFGFCANIEGDEKRQTMVG
TPYWMAPEVVTRKKYGKKVDIWSIGIMAIEMIEGQPPYLYETPLRALYLI
AANGRPDIKSWDKLSPNLQDFLDRCLQVEVDRRATADELLSHPFLNDCSE
VKALVPNIKAAKKVLRRNV*
BS15422.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:10:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pak3-PC | 569 | CG14895-PC | 1..569 | 1..569 | 2973 | 100 | Plus |
| Pak3-PD | 583 | CG14895-PD | 1..569 | 1..569 | 2973 | 100 | Plus |
| Pak3-PA | 569 | CG14895-PA | 1..569 | 1..569 | 2973 | 100 | Plus |
| Pak-PJ | 704 | CG10295-PJ | 311..704 | 188..568 | 933 | 48.6 | Plus |
| Pak-PE | 704 | CG10295-PE | 311..704 | 188..568 | 933 | 48.6 | Plus |
